Wall clock time and date at job start Mon Mar 30 2020 04:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.39017 * 126.76869 * 60.02630 * 4 2 1 6 6 C 1.41490 * 126.02348 * 359.97438 * 5 4 2 7 7 H 1.07997 * 119.99939 * 359.97438 * 6 5 4 8 8 C 1.39733 * 120.00247 * 180.02562 * 6 5 4 9 9 N 1.30987 * 119.99925 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00272 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46977 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47360 * 119.99637 * 10 8 6 13 13 H 1.48506 * 109.46900 * 239.99570 * 10 8 6 14 14 N 1.34841 * 107.95674 * 179.97438 * 5 4 2 15 15 N 1.28669 * 109.63840 * 359.97438 * 14 5 4 16 16 N 1.35014 * 126.77513 * 239.71089 * 4 2 1 17 17 C 1.46500 * 126.49295 * 359.97438 * 16 4 2 18 18 C 1.53000 * 109.47101 * 89.99510 * 17 16 4 19 19 N 1.46909 * 109.47152 * 180.02562 * 18 17 16 20 20 C 1.46896 * 110.99716 * 66.04835 * 19 18 17 21 21 C 1.46892 * 110.99766 * 190.00392 * 19 18 17 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 0.97001 * 120.00294 * 180.02562 * 9 8 6 30 30 H 1.08995 * 109.47402 * 209.99801 * 17 16 4 31 31 H 1.09006 * 109.47032 * 329.99918 * 17 16 4 32 32 H 1.08994 * 109.47745 * 300.00488 * 18 17 16 33 33 H 1.09000 * 109.46981 * 60.00700 * 18 17 16 34 34 H 1.09003 * 109.46973 * 60.00047 * 20 19 18 35 35 H 1.08998 * 109.47166 * 179.97438 * 20 19 18 36 36 H 1.09000 * 109.47201 * 300.00304 * 20 19 18 37 37 H 1.08998 * 109.47386 * 60.00635 * 21 19 18 38 38 H 1.09001 * 109.47027 * 180.02562 * 21 19 18 39 39 H 1.08999 * 109.47654 * 299.99935 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.7853 -0.3601 -2.5528 6 6 1.0087 0.7383 -2.9914 7 1 0.5443 1.3937 -2.2697 8 6 0.8418 0.9743 -4.3585 9 7 1.4047 0.1790 -5.2340 10 14 -0.1829 2.4249 -4.9377 11 1 -0.7053 3.1635 -3.7601 12 1 0.6610 3.3316 -5.7568 13 1 -1.3196 1.9323 -5.7567 14 7 2.4161 -1.2515 -3.3438 15 7 3.0290 -2.1177 -2.6161 16 7 2.8161 -1.8093 -1.2659 17 6 3.3430 -2.5413 -0.1114 18 6 2.3521 -3.6337 0.2954 19 7 2.8802 -4.3674 1.4534 20 6 2.9510 -3.5012 2.6377 21 6 2.0787 -5.5678 1.7262 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.2891 0.3431 -6.1830 30 1 4.2978 -2.9964 -0.3747 31 1 3.4863 -1.8524 0.7211 32 1 1.3974 -3.1787 0.5587 33 1 2.2089 -4.3227 -0.5371 34 1 1.9531 -3.1359 2.8807 35 1 3.3447 -4.0693 3.4804 36 1 3.6070 -2.6556 2.4307 37 1 2.1007 -6.2247 0.8567 38 1 2.4911 -6.0918 2.5884 39 1 1.0493 -5.2774 1.9363 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544950.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:15 Heat of formation + Delta-G solvation = 85.242693 kcal Electronic energy + Delta-G solvation = -19315.716851 eV Core-core repulsion = 16488.258604 eV Total energy + Delta-G solvation = -2827.458247 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.07704 -37.61085 -34.85676 -33.80245 -32.49765 -28.74726 -28.58614 -27.67565 -26.46043 -25.29127 -24.14892 -21.72781 -21.25024 -20.14090 -18.50733 -17.23224 -15.88672 -15.41802 -15.09661 -14.82995 -14.48927 -13.83654 -13.72723 -13.52208 -13.20321 -12.66820 -12.49646 -12.32818 -11.89393 -11.80501 -11.64039 -11.44777 -11.42223 -11.14348 -11.11337 -10.89565 -10.75727 -10.53675 -10.17353 -9.89175 -9.58466 -9.26299 -8.75878 -8.50931 -8.36389 -7.33805 -6.32783 -4.11590 2.84250 3.16576 3.22524 3.25482 3.46697 4.13009 4.18608 4.35935 4.96067 5.05903 5.13407 5.29140 5.44559 5.50426 5.52999 5.54642 5.56853 5.59872 5.76258 5.80448 5.90355 5.92284 6.04606 6.20811 6.22119 6.43459 6.53068 6.57508 6.79329 6.88870 6.90723 6.96906 7.16031 7.19728 7.45256 7.60687 8.20123 8.47570 8.88080 9.13502 10.26454 10.64157 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.030326 B = 0.006076 C = 0.005513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.067795 B = 4607.082311 C = 5077.953048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.013 3.987 3 C -0.144 4.144 4 C -0.106 4.106 5 C 0.157 3.843 6 C -0.449 4.449 7 H 0.086 0.914 8 C 0.072 3.928 9 N -0.777 5.777 10 Si 0.901 3.099 11 H -0.264 1.264 12 H -0.277 1.277 13 H -0.278 1.278 14 N -0.229 5.229 15 N -0.134 5.134 16 N -0.377 5.377 17 C 0.144 3.856 18 C 0.042 3.958 19 N -0.545 5.545 20 C 0.019 3.981 21 C 0.026 3.974 22 H 0.042 0.958 23 H 0.078 0.922 24 H 0.042 0.958 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.077 0.923 29 H 0.270 0.730 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.040 0.960 33 H 0.082 0.918 34 H 0.027 0.973 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.435 -3.282 13.600 13.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.008 4.008 3 C -0.202 4.202 4 C -0.238 4.238 5 C 0.027 3.973 6 C -0.485 4.485 7 H 0.104 0.896 8 C -0.146 4.146 9 N -0.403 5.403 10 Si 0.727 3.273 11 H -0.188 1.188 12 H -0.203 1.203 13 H -0.203 1.203 14 N -0.101 5.101 15 N -0.110 5.110 16 N -0.173 5.173 17 C 0.019 3.981 18 C -0.087 4.087 19 N -0.269 5.269 20 C -0.130 4.130 21 C -0.122 4.122 22 H 0.061 0.939 23 H 0.096 0.904 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.791 -4.480 12.226 13.045 hybrid contribution -1.720 1.430 0.709 2.347 sum -0.929 -3.050 12.936 13.323 Atomic orbital electron populations 1.21846 0.95099 1.01128 1.01968 1.19027 0.95086 0.94670 0.92009 1.21857 1.00353 0.95995 1.01959 1.21409 1.08956 0.96306 0.97119 1.18922 0.97423 0.95603 0.85397 1.18633 1.28919 1.09310 0.91664 0.89588 1.25786 0.95171 0.96671 0.96988 1.70030 1.34745 1.33488 1.02084 0.86381 0.79935 0.81710 0.79313 1.18752 1.20294 1.20326 1.75085 1.08746 1.02314 1.23915 1.81524 1.24287 1.22578 0.82574 1.49444 1.39131 1.21846 1.06887 1.21232 0.97330 0.93205 0.86333 1.22527 0.96415 0.96309 0.93442 1.61921 1.52448 1.07599 1.04977 1.22481 1.00433 0.97402 0.92662 1.22363 0.95158 0.92608 1.02078 0.93864 0.90351 0.93853 0.93299 0.93837 0.93632 0.90375 0.91920 0.89073 0.90388 0.94149 0.89958 0.95457 0.91392 0.91045 0.91219 0.91358 0.95651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.04 37.16 0.34 -2.14 16 2 C 0.01 0.24 3.03 -91.77 -0.28 -0.04 16 3 C -0.14 -2.49 9.04 37.16 0.34 -2.16 16 4 C -0.11 -2.45 5.80 -80.91 -0.47 -2.91 16 5 C 0.16 4.26 6.60 -85.02 -0.56 3.70 16 6 C -0.45 -11.92 7.69 -37.79 -0.29 -12.21 16 7 H 0.09 2.10 4.66 -52.49 -0.24 1.86 16 8 C 0.07 1.92 5.49 -17.35 -0.10 1.82 16 9 N -0.78 -22.08 11.92 55.54 0.66 -21.42 16 10 Si 0.90 19.49 29.56 -169.99 -5.02 14.46 16 11 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 14 N -0.23 -6.70 10.55 32.05 0.34 -6.36 16 15 N -0.13 -3.55 13.74 60.35 0.83 -2.73 16 16 N -0.38 -8.40 3.63 -56.17 -0.20 -8.61 16 17 C 0.14 2.42 6.09 -4.04 -0.02 2.39 16 18 C 0.04 0.64 5.28 -3.82 -0.02 0.62 16 19 N -0.55 -6.82 5.02 -251.27 -1.26 -8.09 16 20 C 0.02 0.19 9.32 60.06 0.56 0.75 16 21 C 0.03 0.28 9.57 60.06 0.57 0.85 16 22 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.08 1.52 5.74 -51.93 -0.30 1.22 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.80 6.88 -51.93 -0.36 0.44 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.08 1.51 5.74 -51.93 -0.30 1.21 16 29 H 0.27 7.06 8.30 -40.82 -0.34 6.73 16 30 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.08 1.17 5.57 -51.93 -0.29 0.88 16 32 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 33 H 0.08 1.37 8.06 -51.93 -0.42 0.95 16 34 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 36 H 0.07 0.74 6.47 -51.93 -0.34 0.40 16 37 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 38 H 0.07 0.60 8.12 -51.93 -0.42 0.17 16 39 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 313.60 15.07 4.73 4.73 Total: -1.00 -31.22 313.60 -5.89 -37.11 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.02 Total: 0.21 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 0.07 Total: -9.32 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.36 Total: -47.19 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.22 -5.89 -37.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544950.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.352 kcal (2) G-P(sol) polarization free energy of solvation -31.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds