Wall clock time and date at job start Mon Mar 30 2020 04:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50706 * 109.47034 * 2 1 4 4 C 1.39021 * 126.76840 * 270.14178 * 3 2 1 5 5 C 1.41486 * 126.02493 * 0.02562 * 4 3 2 6 6 H 1.08000 * 119.99984 * 0.25826 * 5 4 3 7 7 C 1.39740 * 120.00243 * 180.25502 * 5 4 3 8 8 N 1.30979 * 119.99709 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00103 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47009 * 59.99890 * 9 7 5 11 11 H 1.48498 * 109.47092 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47359 * 300.00162 * 9 7 5 13 13 N 1.34841 * 107.95258 * 180.26783 * 4 3 2 14 14 N 1.28668 * 109.64111 * 359.75548 * 13 4 3 15 15 N 1.35012 * 126.77348 * 89.99738 * 3 2 1 16 16 C 1.46506 * 126.49310 * 0.02562 * 15 3 2 17 17 C 1.52999 * 109.46967 * 269.70990 * 16 15 3 18 18 C 1.52996 * 109.47188 * 180.02562 * 17 16 15 19 19 N 1.46900 * 109.47345 * 179.97438 * 18 17 16 20 20 C 1.46894 * 111.00446 * 169.99492 * 19 18 17 21 21 C 1.46900 * 111.00000 * 293.95607 * 19 18 17 22 22 H 1.09005 * 109.46871 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47056 * 299.99672 * 1 2 3 24 24 H 1.08990 * 109.47278 * 60.00047 * 1 2 3 25 25 H 1.09003 * 109.47056 * 240.00328 * 2 1 3 26 26 H 1.08999 * 109.47056 * 119.99823 * 2 1 3 27 27 H 0.96998 * 119.99788 * 179.97438 * 8 7 5 28 28 H 1.08994 * 109.46947 * 29.70408 * 16 15 3 29 29 H 1.08997 * 109.47271 * 149.70925 * 16 15 3 30 30 H 1.09011 * 109.46854 * 299.99834 * 17 16 15 31 31 H 1.09005 * 109.47366 * 59.99260 * 17 16 15 32 32 H 1.08994 * 109.46779 * 299.99451 * 18 17 16 33 33 H 1.08997 * 109.47218 * 59.99832 * 18 17 16 34 34 H 1.09002 * 109.46696 * 59.99801 * 20 19 18 35 35 H 1.08992 * 109.47668 * 179.97438 * 20 19 18 36 36 H 1.09006 * 109.47467 * 300.00645 * 20 19 18 37 37 H 1.08995 * 109.47171 * 59.99581 * 21 19 18 38 38 H 1.09003 * 109.46840 * 179.97438 * 21 19 18 39 39 H 1.08995 * 109.46729 * 299.99341 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3072 2.2064 -1.1136 5 6 2.1640 1.8130 -2.4652 6 1 1.8080 0.8218 -2.7043 7 6 2.4832 2.7071 -3.4906 8 7 2.9153 3.9090 -3.2006 9 14 2.2935 2.1880 -5.2750 10 1 0.8763 1.8307 -5.5386 11 1 2.6951 3.3091 -6.1620 12 1 3.1587 1.0111 -5.5429 13 7 2.7392 3.4074 -0.6788 14 7 2.7470 3.4243 0.6078 15 7 2.3017 2.1829 1.0815 16 6 2.1616 1.7851 2.4845 17 6 0.7549 2.1335 2.9753 18 6 0.6087 1.7186 4.4406 19 7 -0.7416 2.0537 4.9121 20 6 -1.0008 1.4617 6.2312 21 6 -0.9440 3.5085 4.9388 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.1372 4.5295 -3.9124 28 1 2.3223 0.7109 2.5753 29 1 2.8986 2.3151 3.0878 30 1 0.5942 3.2079 2.8844 31 1 0.0179 1.6036 2.3718 32 1 0.7696 0.6445 4.5318 33 1 1.3457 2.2490 5.0437 34 1 -0.2751 1.8433 6.9495 35 1 -2.0069 1.7257 6.5567 36 1 -0.9122 0.3772 6.1666 37 1 -0.8142 3.9119 3.9346 38 1 -1.9517 3.7287 5.2911 39 1 -0.2163 3.9641 5.6103 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545748.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:17 Heat of formation + Delta-G solvation = 80.137132 kcal Electronic energy + Delta-G solvation = -18790.505407 eV Core-core repulsion = 15962.825766 eV Total energy + Delta-G solvation = -2827.679641 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.96726 -37.83214 -34.55127 -33.39614 -32.65708 -30.36943 -28.54559 -27.72906 -26.36548 -24.82573 -22.97584 -22.75100 -20.89263 -20.21738 -18.74848 -17.10808 -15.86110 -15.54174 -15.19810 -14.88621 -14.63370 -14.20328 -13.88761 -13.59504 -13.24275 -12.72404 -12.52685 -12.34308 -12.02558 -11.83039 -11.70071 -11.52878 -11.46774 -11.22303 -11.04962 -11.01046 -10.72142 -10.44663 -10.23217 -10.17005 -9.64453 -9.22224 -8.79169 -8.50450 -8.36469 -7.32525 -6.30023 -4.09008 2.88067 3.21652 3.24105 3.25915 3.58928 3.92849 4.18996 4.37879 4.85973 5.00054 5.05098 5.23035 5.29358 5.38966 5.45823 5.47263 5.57730 5.61436 5.65243 5.67576 5.70910 5.74369 5.85410 6.10041 6.13790 6.28551 6.38806 6.46301 6.62834 6.86743 6.87500 6.93076 7.01961 7.21203 7.49695 7.59947 8.23810 8.49138 8.90334 9.15793 10.28653 10.66990 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.035271 B = 0.004814 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.669438 B = 5814.655562 C = 6117.032047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.018 4.018 3 C -0.109 4.109 4 C 0.152 3.848 5 C -0.451 4.451 6 H 0.080 0.920 7 C 0.073 3.927 8 N -0.779 5.779 9 Si 0.905 3.095 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.269 1.269 13 N -0.229 5.229 14 N -0.138 5.138 15 N -0.375 5.375 16 C 0.141 3.859 17 C -0.133 4.133 18 C 0.059 3.941 19 N -0.548 5.548 20 C 0.025 3.975 21 C 0.020 3.980 22 H 0.045 0.955 23 H 0.046 0.954 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.271 0.729 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.023 0.977 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.814 -6.358 13.277 15.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.058 4.058 3 C -0.241 4.241 4 C 0.022 3.978 5 C -0.487 4.487 6 H 0.098 0.902 7 C -0.145 4.145 8 N -0.405 5.405 9 Si 0.731 3.269 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.194 1.194 13 N -0.101 5.101 14 N -0.113 5.113 15 N -0.171 5.171 16 C 0.017 3.983 17 C -0.172 4.172 18 C -0.069 4.069 19 N -0.271 5.271 20 C -0.123 4.123 21 C -0.128 4.128 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.543 -4.893 13.267 15.188 hybrid contribution 0.116 -0.833 -0.366 0.917 sum -5.426 -5.726 12.901 15.122 Atomic orbital electron populations 1.21799 0.96102 1.00128 1.02168 1.19537 0.94752 0.90391 1.01107 1.21441 1.18650 0.96541 0.87445 1.18971 0.98025 0.87464 0.93342 1.18472 1.42615 1.00023 0.87628 0.90227 1.25763 0.93704 0.94509 1.00560 1.70009 1.31986 1.04768 1.33755 0.86443 0.79315 0.78726 0.82456 1.19362 1.20691 1.19385 1.75071 1.15795 1.19626 0.99569 1.81484 1.22545 1.00069 1.07236 1.49445 1.50532 1.12484 1.04619 1.21239 0.97016 1.00068 0.80022 1.22053 0.97273 1.02880 0.95001 1.22066 0.88447 1.00910 0.95521 1.61939 1.27525 1.11590 1.26080 1.22373 1.00808 1.00114 0.89035 1.22456 1.00779 0.87313 1.02248 0.93599 0.93470 0.91996 0.90584 0.93452 0.91818 0.90309 0.90164 0.91106 0.90186 0.90612 0.94648 0.95821 0.91470 0.91363 0.90712 0.91555 0.95645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.90 37.16 0.37 -2.03 16 2 C -0.02 -0.33 5.99 -27.88 -0.17 -0.50 16 3 C -0.11 -2.56 6.37 -80.90 -0.52 -3.08 16 4 C 0.15 4.27 6.72 -85.02 -0.57 3.70 16 5 C -0.45 -12.47 9.11 -37.78 -0.34 -12.82 16 6 H 0.08 2.03 7.31 -52.49 -0.38 1.65 16 7 C 0.07 1.98 5.49 -17.35 -0.10 1.89 16 8 N -0.78 -22.49 11.92 55.54 0.66 -21.83 16 9 Si 0.91 19.90 29.56 -169.99 -5.02 14.88 16 10 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 13 N -0.23 -6.80 10.55 32.05 0.34 -6.46 16 14 N -0.14 -3.67 13.74 60.35 0.83 -2.84 16 15 N -0.38 -8.35 3.63 -56.17 -0.20 -8.55 16 16 C 0.14 2.27 6.30 -4.04 -0.03 2.24 16 17 C -0.13 -1.92 5.46 -26.73 -0.15 -2.06 16 18 C 0.06 0.67 4.96 -3.83 -0.02 0.65 16 19 N -0.55 -6.26 5.02 -251.27 -1.26 -7.52 16 20 C 0.03 0.22 9.57 60.06 0.57 0.80 16 21 C 0.02 0.22 9.32 60.06 0.56 0.78 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.77 6.18 -51.93 -0.32 0.45 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.08 1.42 7.57 -51.93 -0.39 1.03 16 26 H 0.05 0.75 7.19 -51.93 -0.37 0.38 16 27 H 0.27 7.22 8.30 -40.82 -0.34 6.88 16 28 H 0.08 1.09 7.16 -51.93 -0.37 0.72 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.14 6.55 -51.92 -0.34 0.80 16 31 H 0.08 1.26 6.18 -51.93 -0.32 0.94 16 32 H 0.08 0.77 8.06 -51.93 -0.42 0.35 16 33 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 34 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 36 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 37 H 0.07 0.91 6.47 -51.93 -0.34 0.57 16 38 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 39 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 319.10 15.07 4.81 4.81 Total: -1.00 -32.47 319.10 -6.42 -38.89 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -6.19 Total: -0.96 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -0.38 Total: -10.43 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.36 Total: -47.20 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.47 -6.42 -38.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545748.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.029 kcal (2) G-P(sol) polarization free energy of solvation -32.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds