Wall clock time and date at job start Mon Mar 30 2020 04:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47304 * 2 1 4 4 H 1.09003 * 109.47390 * 181.48324 * 3 2 1 5 5 C 1.50696 * 109.47068 * 301.48353 * 3 2 1 6 6 H 1.08003 * 120.00060 * 114.72535 * 5 3 2 7 7 C 1.37874 * 120.00120 * 294.73129 * 5 3 2 8 8 N 1.31518 * 119.99794 * 348.25016 * 7 5 3 9 9 Si 1.86800 * 120.00298 * 168.25364 * 7 5 3 10 10 H 1.48507 * 109.46924 * 89.99660 * 9 7 5 11 11 H 1.48497 * 109.47488 * 209.99853 * 9 7 5 12 12 H 1.48500 * 109.47063 * 330.00407 * 9 7 5 13 13 N 1.46898 * 109.47113 * 61.48452 * 3 2 1 14 14 C 1.46906 * 111.00084 * 81.13711 * 13 3 2 15 15 C 1.52998 * 109.47018 * 184.63738 * 14 13 3 16 16 H 1.09000 * 110.64648 * 54.30104 * 15 14 13 17 17 C 1.54595 * 110.72387 * 291.14665 * 15 14 13 18 18 C 1.53996 * 105.14289 * 219.68486 * 17 15 14 19 19 N 1.47901 * 107.05272 * 358.77709 * 18 17 15 20 20 C 1.46900 * 110.99727 * 145.84257 * 19 18 17 21 21 C 1.53007 * 117.50073 * 137.19851 * 20 19 18 22 22 C 1.53000 * 60.00267 * 252.51153 * 21 20 19 23 23 C 1.48725 * 105.94818 * 25.20060 * 19 18 17 24 24 H 1.08994 * 109.47192 * 184.04900 * 1 2 3 25 25 H 1.09001 * 109.46820 * 304.05092 * 1 2 3 26 26 H 1.09005 * 109.46790 * 64.04511 * 1 2 3 27 27 H 1.08991 * 109.47646 * 239.99630 * 2 1 3 28 28 H 1.09006 * 109.47110 * 119.99548 * 2 1 3 29 29 H 0.96998 * 119.99980 * 1.67524 * 8 7 5 30 30 H 1.00897 * 111.00207 * 317.18250 * 13 3 2 31 31 H 1.09000 * 109.47229 * 304.63745 * 14 13 3 32 32 H 1.09004 * 109.46684 * 64.63888 * 14 13 3 33 33 H 1.08996 * 110.31381 * 338.60280 * 17 15 14 34 34 H 1.09004 * 110.30642 * 100.67473 * 17 15 14 35 35 H 1.09000 * 109.91669 * 118.12784 * 18 17 15 36 36 H 1.09001 * 109.91859 * 239.42976 * 18 17 15 37 37 H 1.09003 * 115.55350 * 282.90883 * 20 19 18 38 38 H 1.09004 * 117.49112 * 0.02562 * 21 20 19 39 39 H 1.09001 * 117.50078 * 145.01673 * 21 20 19 40 40 H 1.08994 * 117.49634 * 252.50764 * 22 21 20 41 41 H 1.08998 * 117.51734 * 107.47453 * 22 21 20 42 42 H 1.08998 * 110.84373 * 202.57296 * 23 19 18 43 43 H 1.09010 * 110.58335 * 79.38036 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4427 -0.0266 5 6 1.5079 2.1635 -1.2116 6 1 0.8213 2.9884 -1.0909 7 6 1.8974 1.7699 -2.4743 8 7 2.8986 0.9299 -2.6216 9 14 1.0033 2.4299 -3.9758 10 1 1.6604 3.6807 -4.4331 11 1 1.0501 1.4200 -5.0634 12 1 -0.4112 2.7139 -3.6244 13 7 1.5799 2.1246 1.2170 14 6 2.4395 1.7955 2.3619 15 6 1.8641 2.4289 3.6302 16 1 0.8245 2.1329 3.7701 17 6 1.9925 3.9687 3.5794 18 6 2.3818 4.3873 5.0093 19 7 2.4374 3.1533 5.8226 20 6 3.4886 3.2434 6.8448 21 6 3.1540 2.7361 8.2490 22 6 3.2790 4.2385 7.9880 23 6 2.7141 2.0469 4.8680 24 1 -0.3633 -1.0250 0.0726 25 1 -0.3633 0.5754 0.8515 26 1 -0.3633 0.4498 -0.9241 27 1 1.8934 -0.5138 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 3.3472 0.5684 -1.8413 30 1 0.6155 1.9025 1.4133 31 1 2.4834 0.7133 2.4841 32 1 3.4432 2.1824 2.1857 33 1 2.7711 4.2604 2.8746 34 1 1.0404 4.4186 3.2979 35 1 3.3585 4.8713 5.0016 36 1 1.6313 5.0658 5.4149 37 1 4.5073 3.0965 6.4858 38 1 2.1539 2.3352 8.4141 39 1 3.9525 2.2552 8.8140 40 1 4.1598 4.7460 8.3812 41 1 2.3613 4.8266 7.9813 42 1 2.3889 1.0906 5.2778 43 1 3.7735 2.0169 4.6128 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037904602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:40 Heat of formation + Delta-G solvation = 0.847481 kcal Electronic energy + Delta-G solvation = -18995.768355 eV Core-core repulsion = 16268.190800 eV Total energy + Delta-G solvation = -2727.577555 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38150 -38.66129 -37.06875 -34.65158 -32.88746 -30.83018 -30.14503 -27.77706 -25.54610 -24.86983 -23.46780 -22.93397 -21.62242 -21.40528 -20.75729 -18.69040 -17.55939 -16.91934 -16.39549 -16.13664 -15.69109 -15.43403 -15.24051 -14.82242 -14.50024 -14.21730 -14.07369 -13.78112 -13.35766 -13.13875 -12.87500 -12.67558 -12.63260 -12.36121 -12.19881 -12.10074 -11.94916 -11.84934 -11.72472 -11.67266 -11.48929 -11.31740 -10.94135 -10.71748 -10.27291 -9.46047 -9.00923 -8.52797 -6.19217 1.55337 1.63121 1.80884 2.60111 2.79882 2.85734 3.25188 3.42059 3.74646 3.81516 3.98285 4.00078 4.14531 4.23630 4.31455 4.32480 4.35962 4.44845 4.50851 4.53603 4.64485 4.69067 4.73316 4.78630 4.84286 4.93544 4.99745 5.02694 5.09328 5.12968 5.21031 5.26868 5.30083 5.33566 5.41651 5.51570 5.82101 5.99702 6.12539 6.21615 6.57015 6.79791 6.80506 7.56332 8.84357 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.041842 B = 0.003988 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.020341 B = 7018.899187 C = 7274.153900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.143 4.143 3 C 0.207 3.793 4 H -0.011 1.011 5 C -0.578 4.578 6 H 0.046 0.954 7 C -0.029 4.029 8 N -0.939 5.939 9 Si 1.110 2.890 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.677 5.677 14 C 0.073 3.927 15 C -0.079 4.079 16 H 0.080 0.920 17 C -0.111 4.111 18 C 0.045 3.955 19 N -0.497 5.497 20 C -0.026 4.026 21 C -0.156 4.156 22 C -0.161 4.161 23 C 0.051 3.949 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.034 0.966 28 H 0.037 0.963 29 H 0.256 0.744 30 H 0.334 0.666 31 H 0.020 0.980 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.045 0.955 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.374 3.591 19.136 19.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.183 4.183 3 C 0.098 3.902 4 H 0.007 0.993 5 C -0.616 4.616 6 H 0.064 0.936 7 C -0.227 4.227 8 N -0.577 5.577 9 Si 0.933 3.067 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.309 5.309 14 C -0.057 4.057 15 C -0.098 4.098 16 H 0.099 0.901 17 C -0.150 4.150 18 C -0.083 4.083 19 N -0.221 5.221 20 C -0.135 4.135 21 C -0.194 4.194 22 C -0.199 4.199 23 C -0.077 4.077 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.154 0.846 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.556 4.081 17.643 18.175 hybrid contribution 0.993 -0.929 1.064 1.727 sum -0.563 3.152 18.707 18.979 Atomic orbital electron populations 1.21476 0.94799 1.00192 1.01472 1.22054 0.97722 0.99849 0.98626 1.19078 0.92843 0.89394 0.88880 0.99346 1.22069 1.29685 1.17722 0.92160 0.93599 1.26991 0.95776 0.95984 1.03939 1.70899 1.20514 1.32967 1.33345 0.83024 0.75520 0.75665 0.72503 1.20651 1.21213 1.19484 1.60657 1.05864 1.61931 1.02446 1.21885 0.96643 0.96755 0.90397 1.21969 0.99779 0.95642 0.92416 0.90126 1.22263 1.01979 0.95090 0.95635 1.22794 1.00629 0.92644 0.92198 1.64563 1.42270 1.03444 1.11866 1.22684 0.93659 1.08265 0.88901 1.23065 1.03479 0.96718 0.96111 1.23052 1.03881 0.92779 1.00156 1.23160 0.97832 0.95537 0.91148 0.92841 0.92648 0.93619 0.94680 0.94423 0.93410 0.84588 0.96170 0.93494 0.92694 0.91089 0.93686 0.89780 0.89755 0.88693 0.87354 0.87283 0.88617 0.89471 0.93948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.83 9.40 71.98 0.68 -4.15 16 2 C -0.14 -6.48 5.47 30.59 0.17 -6.31 16 3 C 0.21 10.32 1.95 44.17 0.09 10.41 16 4 H -0.01 -0.64 7.17 -2.39 -0.02 -0.66 16 5 C -0.58 -31.98 7.50 25.60 0.19 -31.79 16 6 H 0.05 2.58 7.84 -2.91 -0.02 2.56 16 7 C -0.03 -1.64 5.18 84.65 0.44 -1.20 16 8 N -0.94 -56.89 13.05 21.45 0.28 -56.61 16 9 Si 1.11 50.56 29.92 68.60 2.05 52.61 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 13 N -0.68 -28.10 6.12 -495.43 -3.03 -31.13 16 14 C 0.07 2.55 4.84 86.30 0.42 2.97 16 15 C -0.08 -2.21 3.18 -9.59 -0.03 -2.24 16 16 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 17 C -0.11 -3.07 6.38 31.47 0.20 -2.87 16 18 C 0.04 1.04 6.49 86.45 0.56 1.60 16 19 N -0.50 -11.54 5.41 -857.27 -4.64 -16.18 16 20 C -0.03 -0.51 4.87 44.92 0.22 -0.29 16 21 C -0.16 -2.50 10.46 30.60 0.32 -2.18 16 22 C -0.16 -2.53 10.20 30.60 0.31 -2.22 16 23 C 0.05 1.27 6.03 86.61 0.52 1.79 16 24 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.05 1.97 6.18 -2.39 -0.01 1.95 16 26 H 0.04 2.00 7.33 -2.38 -0.02 1.98 16 27 H 0.03 1.79 6.59 -2.39 -0.02 1.78 16 28 H 0.04 1.55 7.11 -2.38 -0.02 1.53 16 29 H 0.26 15.71 6.18 -92.71 -0.57 15.14 16 30 H 0.33 13.01 6.31 -89.70 -0.57 12.45 16 31 H 0.02 0.70 7.06 -2.39 -0.02 0.69 16 32 H 0.05 1.77 8.02 -2.38 -0.02 1.75 16 33 H 0.05 1.71 7.76 -2.39 -0.02 1.69 16 34 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.04 1.02 7.77 -2.39 -0.02 1.01 16 36 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.08 1.68 7.98 -2.39 -0.02 1.66 16 38 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.04 1.07 7.82 -2.38 -0.02 1.05 16 Total: -1.00 -61.51 332.15 -0.66 -62.17 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.59 Total: 25.63 kcal Atomic # 6 Polarization: -40.57 SS G_CDS: 4.08 Total: -36.49 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -7.39 Total: -103.93 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 2.05 Total: 52.61 kcal Total: -61.51 -0.66 -62.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037904602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.020 kcal (2) G-P(sol) polarization free energy of solvation -61.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds