Wall clock time and date at job start Mon Mar 30 2020 04:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47512 * 2 1 4 4 H 1.08996 * 109.47186 * 179.10370 * 3 2 1 5 5 C 1.50700 * 109.47198 * 59.10514 * 3 2 1 6 6 H 1.07998 * 120.00512 * 240.27868 * 5 3 2 7 7 C 1.37879 * 120.00023 * 60.00126 * 5 3 2 8 8 N 1.31519 * 120.00025 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00307 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47411 * 59.99888 * 9 7 5 11 11 H 1.48500 * 109.47618 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46895 * 299.99845 * 9 7 5 13 13 N 1.46897 * 109.46923 * 299.10908 * 3 2 1 14 14 C 1.46908 * 110.99894 * 273.34565 * 13 3 2 15 15 H 1.09001 * 110.43544 * 36.96975 * 14 13 3 16 16 C 1.54985 * 110.48746 * 274.42410 * 14 13 3 17 17 C 1.55192 * 104.93441 * 243.81633 * 16 14 13 18 18 N 1.47098 * 103.52181 * 23.99540 * 17 16 14 19 19 C 1.45673 * 116.52199 * 197.61592 * 18 17 16 20 20 C 1.53624 * 107.80775 * 182.64325 * 19 18 17 21 21 C 1.52821 * 110.71081 * 302.62833 * 20 19 18 22 22 C 1.53671 * 110.60451 * 53.74002 * 21 20 19 23 23 C 1.49072 * 103.72501 * 317.74351 * 18 17 16 24 24 H 1.08997 * 110.37644 * 286.24396 * 23 18 17 25 25 H 1.08998 * 109.47101 * 182.86714 * 1 2 3 26 26 H 1.08999 * 109.47055 * 302.86760 * 1 2 3 27 27 H 1.09004 * 109.47133 * 62.86496 * 1 2 3 28 28 H 1.09005 * 109.47213 * 239.99572 * 2 1 3 29 29 H 1.09008 * 109.47075 * 119.99979 * 2 1 3 30 30 H 0.96997 * 119.99952 * 180.02562 * 8 7 5 31 31 H 1.00900 * 110.99915 * 149.39591 * 13 3 2 32 32 H 1.08999 * 110.35046 * 2.68395 * 16 14 13 33 33 H 1.09003 * 110.34870 * 124.95435 * 16 14 13 34 34 H 1.08999 * 110.61364 * 142.50487 * 17 16 14 35 35 H 1.09000 * 110.61283 * 265.33533 * 17 16 14 36 36 H 1.08997 * 109.79415 * 302.22186 * 19 18 17 37 37 H 1.09003 * 109.79522 * 63.00998 * 19 18 17 38 38 H 1.09005 * 109.22911 * 62.94626 * 20 19 18 39 39 H 1.08995 * 109.23702 * 182.35267 * 20 19 18 40 40 H 1.09003 * 109.24713 * 174.02583 * 21 20 19 41 41 H 1.08995 * 109.25390 * 293.48702 * 21 20 19 42 42 H 1.08997 * 109.83892 * 63.39241 * 22 21 20 43 43 H 1.08996 * 109.83952 * 184.29352 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1299 1.4424 0.0161 5 6 1.5198 2.1593 1.2192 6 1 0.8968 3.0342 1.1065 7 6 1.8343 1.6948 2.4787 8 7 2.5889 0.6264 2.6161 9 14 1.1889 2.5828 3.9900 10 1 -0.2960 2.5823 3.9680 11 1 1.6665 1.8896 5.2133 12 1 1.6834 3.9830 3.9902 13 7 1.5681 2.1287 -1.2100 14 6 2.4894 1.9090 -2.3331 15 1 2.8893 0.8954 -2.3046 16 6 3.6397 2.9471 -2.3021 17 6 3.4648 3.7768 -3.6019 18 7 2.0389 3.6141 -3.9245 19 6 1.6390 3.9390 -5.2871 20 6 0.1159 3.7643 -5.3840 21 6 -0.2910 2.3434 -4.9956 22 6 0.2726 1.9782 -3.6134 23 6 1.7807 2.1687 -3.6669 24 1 2.2221 1.5581 -4.4545 25 1 -0.3633 -1.0264 0.0514 26 1 -0.3633 0.5577 0.8632 27 1 -0.3633 0.4687 -0.9146 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 2.8099 0.2994 3.5021 31 1 1.4357 3.1141 -1.0385 32 1 3.5468 3.5898 -1.4267 33 1 4.6059 2.4424 -2.3018 34 1 3.7002 4.8258 -3.4221 35 1 4.0894 3.3758 -4.4001 36 1 1.9075 4.9706 -5.5145 37 1 2.1339 3.2660 -5.9874 38 1 -0.3702 4.4729 -4.7134 39 1 -0.2038 3.9615 -6.4072 40 1 -1.3786 2.2754 -4.9696 41 1 0.0951 1.6437 -5.7368 42 1 -0.1577 2.6312 -2.8542 43 1 0.0401 0.9388 -3.3820 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049565038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:51 Heat of formation + Delta-G solvation = -5.906684 kcal Electronic energy + Delta-G solvation = -20123.162607 eV Core-core repulsion = 17395.292170 eV Total energy + Delta-G solvation = -2727.870437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.76756 -36.16694 -34.41468 -32.57756 -31.11378 -29.70321 -28.71096 -26.62819 -24.97462 -23.10132 -22.77704 -21.30907 -20.39392 -19.49813 -18.45228 -16.51749 -15.56523 -15.04454 -14.81382 -14.56388 -14.20777 -13.67880 -13.46048 -13.28313 -13.00478 -12.67711 -12.27855 -12.10294 -11.83873 -11.76594 -11.44096 -10.93862 -10.93026 -10.86366 -10.62118 -10.54934 -10.40243 -10.22779 -10.07903 -10.01879 -9.91676 -9.54759 -9.27769 -8.71688 -8.41140 -8.15645 -7.06326 -5.96759 -4.01398 3.33952 3.38541 3.41576 4.21204 4.44608 4.85052 4.95918 5.06174 5.25656 5.32152 5.36232 5.40183 5.53498 5.55679 5.62627 5.77387 5.79648 5.88904 6.04905 6.05534 6.18278 6.24104 6.30395 6.32310 6.37977 6.53943 6.61193 6.65597 6.75098 6.91082 6.96460 7.25697 7.30002 7.42793 7.47728 7.58084 7.81684 7.86383 7.93369 8.34935 8.52148 8.78967 9.10444 9.63232 11.09119 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.028400 B = 0.006074 C = 0.005771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.688019 B = 4608.568534 C = 4850.297134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.101 4.101 3 C 0.216 3.784 4 H -0.001 1.001 5 C -0.510 4.510 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.667 5.667 14 C 0.095 3.905 15 H 0.074 0.926 16 C -0.151 4.151 17 C 0.045 3.955 18 N -0.521 5.521 19 C 0.056 3.944 20 C -0.112 4.112 21 C -0.124 4.124 22 C -0.084 4.084 23 C 0.075 3.925 24 H 0.039 0.961 25 H 0.010 0.990 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.007 0.993 29 H 0.083 0.917 30 H 0.260 0.740 31 H 0.337 0.663 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.031 0.969 36 H 0.067 0.933 37 H 0.026 0.974 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.048 0.952 42 H 0.086 0.914 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.195 3.606 -13.815 14.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.109 3.891 4 H 0.017 0.983 5 C -0.548 4.548 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.529 5.529 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.297 5.297 14 C -0.017 4.017 15 H 0.092 0.908 16 C -0.191 4.191 17 C -0.083 4.083 18 N -0.246 5.246 19 C -0.072 4.072 20 C -0.149 4.149 21 C -0.162 4.162 22 C -0.122 4.122 23 C -0.033 4.033 24 H 0.057 0.943 25 H 0.029 0.971 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.026 0.974 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.155 0.845 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.842 3.337 -13.536 14.063 hybrid contribution 1.097 0.515 0.498 1.310 sum -0.746 3.852 -13.038 13.616 Atomic orbital electron populations 1.21450 0.97565 0.97157 1.01463 1.21425 0.95009 0.98440 0.99106 1.19094 0.93061 0.91365 0.85611 0.98306 1.21176 1.31279 1.11966 0.90414 0.92425 1.24870 0.95142 0.94990 0.98802 1.69880 1.37164 1.22942 1.22903 0.86676 0.79343 0.79701 0.82354 1.20265 1.21465 1.20462 1.60673 1.46076 1.16818 1.06181 1.22051 0.90482 0.97245 0.91940 0.90796 1.23373 0.99780 0.98559 0.97387 1.22773 0.88478 1.00228 0.96800 1.64026 1.17555 1.19745 1.23287 1.21976 0.96083 0.99975 0.89189 1.21550 0.94961 0.97938 1.00488 1.21684 1.00342 0.95971 0.98184 1.21182 0.93328 1.02002 0.95680 1.22521 0.97056 0.87476 0.96276 0.94312 0.97050 0.92625 0.93741 0.97397 0.89823 0.93034 0.84478 0.90487 0.92116 0.90915 0.95073 0.91442 0.95592 0.91241 0.92499 0.92277 0.93297 0.89497 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.52 37.16 0.35 -2.30 16 2 C -0.10 -2.42 5.58 -26.73 -0.15 -2.57 16 3 C 0.22 5.23 2.16 -68.87 -0.15 5.08 16 4 H 0.00 -0.02 7.69 -51.93 -0.40 -0.42 16 5 C -0.51 -13.48 7.23 -34.44 -0.25 -13.73 16 6 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -25.07 11.33 55.43 0.63 -24.44 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.67 -13.48 4.01 -99.71 -0.40 -13.88 16 14 C 0.10 1.68 3.02 -66.53 -0.20 1.48 16 15 H 0.07 1.39 7.32 -51.93 -0.38 1.01 16 16 C -0.15 -2.45 6.50 -24.52 -0.16 -2.61 16 17 C 0.05 0.64 6.71 -2.56 -0.02 0.62 16 18 N -0.52 -7.57 4.85 -224.29 -1.09 -8.66 16 19 C 0.06 0.70 5.87 -4.16 -0.02 0.67 16 20 C -0.11 -1.29 6.06 -26.50 -0.16 -1.45 16 21 C -0.12 -1.53 5.95 -26.47 -0.16 -1.69 16 22 C -0.08 -1.26 5.07 -26.84 -0.14 -1.40 16 23 C 0.07 1.15 2.46 -66.83 -0.16 0.99 16 24 H 0.04 0.59 7.99 -51.93 -0.41 0.17 16 25 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 26 H 0.05 1.34 7.09 -51.93 -0.37 0.98 16 27 H 0.04 0.93 7.72 -51.93 -0.40 0.53 16 28 H 0.01 0.17 7.56 -51.93 -0.39 -0.22 16 29 H 0.08 2.24 6.10 -51.92 -0.32 1.93 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.34 7.06 7.76 -39.29 -0.30 6.75 16 32 H 0.08 1.38 7.71 -51.93 -0.40 0.98 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.03 0.32 7.99 -51.93 -0.42 -0.10 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.09 1.47 7.52 -51.93 -0.39 1.08 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 322.23 15.07 4.86 4.86 Total: -1.00 -26.47 322.23 -10.28 -36.75 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -7.94 Total: 4.50 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -1.31 Total: -15.30 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -0.86 Total: -46.98 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.47 -10.28 -36.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049565038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.841 kcal (2) G-P(sol) polarization free energy of solvation -26.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds