Wall clock time and date at job start Mon Mar 30 2020 04:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47100 * 2 1 4 4 H 1.08996 * 109.47170 * 304.15418 * 3 2 1 5 5 C 1.50696 * 109.46974 * 184.14982 * 3 2 1 6 6 H 1.08001 * 119.99686 * 239.99820 * 5 3 2 7 7 C 1.37873 * 120.00401 * 60.00300 * 5 3 2 8 8 N 1.31525 * 119.99561 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00330 * 179.97438 * 7 5 3 10 10 H 1.48489 * 109.47151 * 60.00180 * 9 7 5 11 11 H 1.48506 * 109.47044 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46936 * 299.99714 * 9 7 5 13 13 N 1.46905 * 109.46867 * 64.14938 * 3 2 1 14 14 C 1.46899 * 111.00037 * 205.93940 * 13 3 2 15 15 H 1.09000 * 110.43219 * 327.49754 * 14 13 3 16 16 C 1.54996 * 110.48664 * 90.18304 * 14 13 3 17 17 C 1.55191 * 104.92753 * 121.17090 * 16 14 13 18 18 N 1.47088 * 103.52947 * 23.99430 * 17 16 14 19 19 C 1.45671 * 116.53185 * 197.59473 * 18 17 16 20 20 C 1.53628 * 107.80477 * 182.65921 * 19 18 17 21 21 C 1.52824 * 110.70072 * 302.61915 * 20 19 18 22 22 C 1.53659 * 110.60580 * 53.75660 * 21 20 19 23 23 C 1.48726 * 103.70341 * 317.76601 * 18 17 16 24 24 H 1.08994 * 110.33916 * 285.54136 * 23 18 17 25 25 H 1.09002 * 109.46931 * 174.72960 * 1 2 3 26 26 H 1.08998 * 109.47140 * 294.73009 * 1 2 3 27 27 H 1.09001 * 109.46905 * 54.73176 * 1 2 3 28 28 H 1.09002 * 109.46688 * 240.00493 * 2 1 3 29 29 H 1.08996 * 109.46681 * 120.00306 * 2 1 3 30 30 H 0.97003 * 119.99760 * 180.02562 * 8 7 5 31 31 H 1.00906 * 110.99721 * 81.98447 * 13 3 2 32 32 H 1.08997 * 110.34876 * 240.03291 * 16 14 13 33 33 H 1.09000 * 110.34441 * 2.31060 * 16 14 13 34 34 H 1.09007 * 110.61116 * 265.48181 * 17 16 14 35 35 H 1.09001 * 110.60861 * 142.50859 * 17 16 14 36 36 H 1.09003 * 109.79207 * 302.23083 * 19 18 17 37 37 H 1.08991 * 109.79132 * 63.08018 * 19 18 17 38 38 H 1.08995 * 109.23557 * 62.93579 * 20 19 18 39 39 H 1.09002 * 109.22715 * 182.31027 * 20 19 18 40 40 H 1.08992 * 109.25105 * 293.45819 * 21 20 19 41 41 H 1.09002 * 109.24648 * 174.03817 * 21 20 19 42 42 H 1.08996 * 109.83979 * 184.35294 * 22 21 20 43 43 H 1.09003 * 109.89958 * 63.41253 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6172 1.9774 -0.8504 5 6 3.5435 1.4437 -0.1028 6 1 4.1378 1.8922 0.6795 7 6 4.1603 0.8724 -1.1956 8 7 3.4364 0.3269 -2.1486 9 14 6.0239 0.8746 -1.3233 10 1 6.6003 0.1463 -0.1648 11 1 6.4344 0.2049 -2.5836 12 1 6.5183 2.2748 -1.3237 13 7 1.6339 2.1054 1.2465 14 6 1.5359 3.5594 1.0617 15 1 2.2707 3.9007 0.3325 16 6 0.1040 3.9548 0.6191 17 6 -0.3959 4.9359 1.7126 18 7 0.8470 5.4760 2.2845 19 6 0.7379 6.1210 3.5861 20 6 2.1255 6.6651 3.9586 21 6 3.1620 5.5421 3.9657 22 6 3.1486 4.7853 2.6284 23 6 1.7295 4.2843 2.3981 24 1 1.4116 3.6553 3.2295 25 1 -0.3633 -1.0233 -0.0944 26 1 -0.3633 0.4299 0.9334 27 1 -0.3633 0.5934 -0.8391 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8703 -0.0754 -2.9172 31 1 2.2661 1.8783 1.9994 32 1 0.1305 4.4503 -0.3514 33 1 -0.5368 3.0740 0.5785 34 1 -0.9686 4.4042 2.4725 35 1 -0.9924 5.7332 1.2691 36 1 0.0220 6.9412 3.5327 37 1 0.4137 5.3951 4.3317 38 1 2.4212 7.4220 3.2322 39 1 2.0796 7.1175 4.9492 40 1 2.9337 4.8475 4.7740 41 1 4.1522 5.9681 4.1275 42 1 3.8361 3.9408 2.6744 43 1 3.4399 5.4557 1.8198 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049565041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:54 Heat of formation + Delta-G solvation = -11.612595 kcal Electronic energy + Delta-G solvation = -19950.617136 eV Core-core repulsion = 17222.499272 eV Total energy + Delta-G solvation = -2728.117864 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.74059 -36.15476 -34.40151 -32.58617 -31.45393 -29.90398 -28.83394 -26.73342 -24.97243 -22.88758 -22.61012 -21.44428 -19.95504 -19.52058 -19.07021 -16.58338 -15.64067 -15.20474 -14.92688 -14.61526 -14.34645 -13.63201 -13.44829 -13.16798 -13.05364 -12.82680 -12.48673 -12.21986 -11.80533 -11.39547 -11.23898 -11.18027 -11.06764 -10.90519 -10.75065 -10.63300 -10.58404 -10.42424 -10.14472 -10.00595 -9.90869 -9.55195 -9.38614 -9.02677 -8.35204 -8.17964 -7.24046 -5.97474 -4.10156 3.29296 3.34517 3.36847 4.17953 4.41201 4.84924 4.89586 5.00969 5.23590 5.30514 5.32642 5.46180 5.52359 5.58941 5.61278 5.68116 5.83800 5.90493 5.96391 6.01584 6.12920 6.21791 6.33880 6.38413 6.41059 6.43743 6.51337 6.61340 6.64063 6.73726 6.83674 7.13860 7.16461 7.22976 7.44995 7.48922 7.63793 7.80227 8.11676 8.18594 8.37626 8.69719 9.02607 9.57361 11.02725 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021313 B = 0.006942 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.450186 B = 4032.188662 C = 4973.331387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.217 3.783 4 H 0.033 0.967 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.682 5.682 14 C 0.099 3.901 15 H 0.059 0.941 16 C -0.111 4.111 17 C 0.046 3.954 18 N -0.525 5.525 19 C 0.056 3.944 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.107 4.107 23 C 0.065 3.935 24 H 0.053 0.947 25 H 0.023 0.977 26 H 0.045 0.955 27 H 0.036 0.964 28 H 0.089 0.911 29 H 0.029 0.971 30 H 0.261 0.739 31 H 0.326 0.674 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.036 0.964 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.029 0.971 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.654 8.875 9.471 13.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.109 3.891 4 H 0.050 0.950 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.312 5.312 14 C -0.012 4.012 15 H 0.077 0.923 16 C -0.150 4.150 17 C -0.082 4.082 18 N -0.250 5.250 19 C -0.073 4.073 20 C -0.150 4.150 21 C -0.157 4.157 22 C -0.145 4.145 23 C -0.043 4.043 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.108 0.892 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.140 9.089 8.856 13.692 hybrid contribution 1.661 -0.346 0.396 1.743 sum -3.479 8.743 9.252 13.196 Atomic orbital electron populations 1.21691 0.99082 0.98201 1.00282 1.21497 0.92010 0.99369 1.01598 1.19159 0.92573 0.91003 0.86368 0.94953 1.21830 0.92707 1.37914 1.05825 0.92939 1.24921 0.97838 0.95039 0.95663 1.69873 1.34920 1.38023 1.09550 0.86741 0.86241 0.78187 0.77324 1.20348 1.21269 1.20376 1.61042 1.54993 1.05373 1.09809 1.21864 0.95756 0.89263 0.94318 0.92262 1.22625 0.97288 0.97998 0.97100 1.22810 0.91424 0.97004 0.96919 1.63869 1.11845 1.25110 1.24188 1.21986 0.97368 0.98110 0.89839 1.21567 0.94428 0.98367 1.00679 1.21582 0.98697 0.97494 0.97890 1.21508 0.95878 0.99962 0.97104 1.22589 0.93369 0.90372 0.98004 0.92918 0.95771 0.93567 0.94451 0.89236 0.95196 0.92870 0.85681 0.91989 0.90409 0.94604 0.91068 0.91267 0.95236 0.91392 0.92208 0.92657 0.92179 0.91341 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.73 37.16 0.36 -2.41 16 2 C -0.11 -2.52 5.45 -26.73 -0.15 -2.67 16 3 C 0.22 5.26 1.85 -68.86 -0.13 5.14 16 4 H 0.03 0.88 7.84 -51.93 -0.41 0.47 16 5 C -0.54 -14.43 8.35 -34.44 -0.29 -14.72 16 6 H 0.05 1.38 7.73 -52.49 -0.41 0.97 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -24.92 11.30 55.43 0.63 -24.29 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.68 -13.98 5.49 -99.71 -0.55 -14.52 16 14 C 0.10 1.86 2.77 -66.52 -0.18 1.67 16 15 H 0.06 1.29 7.58 -51.93 -0.39 0.90 16 16 C -0.11 -1.89 6.84 -24.52 -0.17 -2.05 16 17 C 0.05 0.67 6.71 -2.56 -0.02 0.66 16 18 N -0.53 -7.77 4.84 -224.49 -1.09 -8.86 16 19 C 0.06 0.69 5.87 -4.16 -0.02 0.67 16 20 C -0.11 -1.28 6.06 -26.50 -0.16 -1.45 16 21 C -0.12 -1.47 5.95 -26.48 -0.16 -1.62 16 22 C -0.11 -1.61 5.64 -26.77 -0.15 -1.76 16 23 C 0.06 1.04 1.89 -66.95 -0.13 0.91 16 24 H 0.05 0.87 7.89 -51.93 -0.41 0.46 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.90 7.88 -51.93 -0.41 0.49 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 2.38 5.97 -51.93 -0.31 2.07 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.33 6.69 8.06 -39.29 -0.32 6.37 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.37 7.97 -51.93 -0.41 0.96 16 34 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.37 7.98 -51.93 -0.41 -0.04 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 327.92 15.07 4.94 4.94 Total: -1.00 -26.78 327.92 -10.48 -37.26 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -8.11 Total: 5.29 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -1.28 Total: -15.88 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -1.01 Total: -47.67 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.78 -10.48 -37.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049565041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.650 kcal (2) G-P(sol) polarization free energy of solvation -26.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds