Wall clock time and date at job start Mon Mar 30 2020 03:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99968 * 2 1 4 4 H 1.48506 * 109.47044 * 269.99523 * 3 2 1 5 5 H 1.48495 * 109.47209 * 29.99827 * 3 2 1 6 6 H 1.48503 * 109.47215 * 149.99668 * 3 2 1 7 7 C 1.37877 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00377 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99678 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46935 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47244 * 180.02562 * 10 9 7 12 12 N 1.46893 * 109.47637 * 180.02562 * 11 10 9 13 13 C 1.46895 * 111.00373 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47456 * 179.97438 * 13 12 11 15 15 H 1.08997 * 110.64240 * 303.30745 * 14 13 12 16 16 C 1.54596 * 110.72137 * 66.45201 * 14 13 12 17 17 C 1.53994 * 105.13959 * 140.49687 * 16 14 13 18 18 N 1.47898 * 107.05662 * 1.22333 * 17 16 14 19 19 C 1.46902 * 110.99850 * 214.15695 * 18 17 16 20 20 C 1.53005 * 117.49828 * 291.78714 * 19 18 17 21 21 C 1.53003 * 60.00047 * 252.51509 * 20 19 18 22 22 C 1.48529 * 105.82071 * 334.67288 * 18 17 16 23 23 H 0.97001 * 120.00082 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47164 * 60.00264 * 9 7 2 25 25 H 1.08995 * 109.47041 * 300.00323 * 9 7 2 26 26 H 1.08998 * 109.47122 * 60.00063 * 10 9 7 27 27 H 1.08995 * 109.47376 * 299.99942 * 10 9 7 28 28 H 1.09006 * 109.47067 * 59.99586 * 11 10 9 29 29 H 1.09005 * 109.47260 * 299.99995 * 11 10 9 30 30 H 1.00907 * 110.99743 * 303.95755 * 12 11 10 31 31 H 1.09003 * 109.47484 * 59.99991 * 13 12 11 32 32 H 1.09002 * 109.47108 * 299.99846 * 13 12 11 33 33 H 1.08994 * 110.31134 * 21.57900 * 16 14 13 34 34 H 1.09006 * 110.31133 * 259.41189 * 16 14 13 35 35 H 1.09005 * 109.91676 * 241.86969 * 17 16 14 36 36 H 1.08997 * 110.08205 * 120.66878 * 17 16 14 37 37 H 1.08996 * 115.56406 * 77.47925 * 19 18 17 38 38 H 1.08997 * 117.49524 * 145.02766 * 20 19 18 39 39 H 1.08998 * 117.49746 * 359.97438 * 20 19 18 40 40 H 1.08996 * 117.50523 * 107.49510 * 21 20 19 41 41 H 1.09006 * 117.49436 * 252.49496 * 21 20 19 42 42 H 1.09000 * 110.66803 * 157.64485 * 22 18 17 43 43 H 1.09002 * 110.66776 * 280.76920 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6367 0.0022 12 7 6.0412 -4.0216 0.0015 13 6 7.5096 -4.0608 0.0033 14 6 7.9810 -5.5164 0.0031 15 1 7.5655 -6.0550 0.8547 16 6 7.6015 -6.2141 -1.3233 17 6 8.8123 -7.0991 -1.6729 18 7 9.8013 -6.9302 -0.5863 19 6 11.1730 -7.0046 -1.1067 20 6 11.6568 -8.3577 -1.6322 21 6 12.1901 -7.8180 -0.3035 22 6 9.5282 -5.5958 0.0060 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6801 0.8911 25 1 3.8751 -0.6804 -0.8888 26 1 3.6585 -3.1502 -0.8892 27 1 3.6578 -3.1506 0.8907 28 1 5.9141 -2.1231 0.8927 29 1 5.9156 -2.1225 -0.8873 30 1 5.6650 -4.5385 0.7822 31 1 7.8855 -3.5577 0.8942 32 1 7.8876 -3.5560 -0.8858 33 1 7.4354 -5.4740 -2.1060 34 1 6.7111 -6.8278 -1.1867 35 1 9.2443 -6.7796 -2.6213 36 1 8.5063 -8.1433 -1.7375 37 1 11.5326 -6.1097 -1.6145 38 1 12.3347 -8.3528 -2.4857 39 1 10.9574 -9.1927 -1.5914 40 1 11.8415 -8.2979 0.6109 41 1 13.2189 -7.4584 -0.2830 42 1 9.9144 -5.5402 1.0238 43 1 9.9551 -4.8059 -0.6121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578448.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:57 Heat of formation + Delta-G solvation = 13.606104 kcal Electronic energy + Delta-G solvation = -18000.009732 eV Core-core repulsion = 15272.985433 eV Total energy + Delta-G solvation = -2727.024299 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.60264 -37.14602 -35.77885 -33.55473 -31.85034 -30.19360 -29.36949 -26.73951 -24.04369 -22.85643 -22.27297 -21.95963 -20.82870 -20.27204 -19.65338 -16.90535 -16.67424 -16.08317 -15.62342 -15.23592 -14.48515 -14.19572 -13.95558 -13.90074 -13.60070 -13.26234 -12.69960 -12.56903 -12.24603 -11.90198 -11.84070 -11.76568 -11.64542 -11.21194 -11.07672 -10.87737 -10.75322 -10.68654 -10.66831 -10.31920 -9.93099 -9.70693 -9.54634 -9.15095 -8.72105 -8.51645 -8.22647 -6.01930 -3.99543 3.31825 3.38899 3.41301 3.42664 3.54151 4.19959 4.47029 4.51994 4.58018 4.62588 4.67025 4.87665 4.96093 5.09017 5.25426 5.27497 5.31846 5.32049 5.41116 5.48568 5.49547 5.62787 5.65297 5.70300 5.76366 5.84349 5.87093 5.88332 6.09833 6.18249 6.18896 6.56670 6.58963 6.60904 6.82228 6.94000 7.22464 7.36631 7.46115 7.58471 7.82707 8.57470 9.03750 9.60710 11.11658 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.063255 B = 0.002755 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.547321 B =10162.173381 C =10377.234623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.057 3.943 12 N -0.688 5.688 13 C 0.067 3.933 14 C -0.088 4.088 15 H 0.081 0.919 16 C -0.114 4.114 17 C 0.037 3.963 18 N -0.492 5.492 19 C -0.006 4.006 20 C -0.171 4.171 21 C -0.163 4.163 22 C 0.045 3.955 23 H 0.262 0.738 24 H 0.013 0.987 25 H 0.011 0.989 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.023 0.977 29 H 0.065 0.935 30 H 0.339 0.661 31 H 0.027 0.973 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.169 -14.177 -1.553 28.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.072 4.072 12 N -0.319 5.319 13 C -0.063 4.063 14 C -0.107 4.107 15 H 0.100 0.900 16 C -0.152 4.152 17 C -0.091 4.091 18 N -0.216 5.216 19 C -0.116 4.116 20 C -0.208 4.208 21 C -0.201 4.201 22 C -0.083 4.083 23 H 0.072 0.928 24 H 0.031 0.969 25 H 0.029 0.971 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.156 0.844 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 23.920 -14.540 -1.862 28.054 hybrid contribution 0.670 1.874 0.264 2.008 sum 24.590 -12.666 -1.598 27.707 Atomic orbital electron populations 1.69921 1.06285 1.26813 1.51369 1.25052 0.94752 0.99191 0.94679 0.86758 0.80297 0.83621 0.78460 1.20322 1.21438 1.19110 1.21158 0.89537 0.94456 1.50480 0.91015 1.19545 0.97157 0.92344 0.96066 1.21436 0.91097 0.99600 1.01567 1.22146 0.97638 0.87649 0.99741 1.60504 1.06392 1.14963 1.50021 1.21927 0.89109 0.94967 1.00300 1.22067 0.93911 0.95868 0.98902 0.90025 1.22328 0.97278 0.98430 0.97160 1.22864 0.92504 1.00744 0.92962 1.64543 1.00607 1.29195 1.27236 1.22603 0.90413 0.95132 1.03409 1.22997 1.03393 0.96785 0.97673 1.23016 0.97702 1.03353 0.96006 1.23196 0.95596 0.89457 1.00069 0.92793 0.96879 0.97101 0.91969 0.93028 0.95856 0.91634 0.84357 0.95454 0.91286 0.90861 0.90690 0.93822 0.90611 0.89556 0.88793 0.88325 0.88162 0.88868 0.90107 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.10 -1.98 5.41 -26.73 -0.14 -2.13 16 11 C 0.06 0.93 5.68 -3.83 -0.02 0.91 16 12 N -0.69 -9.43 6.31 -113.78 -0.72 -10.15 16 13 C 0.07 0.76 5.03 -3.83 -0.02 0.74 16 14 C -0.09 -0.88 3.24 -88.76 -0.29 -1.17 16 15 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 16 C -0.11 -1.15 6.33 -25.37 -0.16 -1.32 16 17 C 0.04 0.34 6.48 -2.76 -0.02 0.33 16 18 N -0.49 -4.74 5.42 -222.50 -1.21 -5.94 16 19 C -0.01 -0.05 4.87 -67.71 -0.33 -0.38 16 20 C -0.17 -1.23 10.19 -26.73 -0.27 -1.50 16 21 C -0.16 -1.19 10.46 -26.73 -0.28 -1.47 16 22 C 0.04 0.42 6.01 -1.91 -0.01 0.41 16 23 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 24 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 25 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 26 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.34 4.41 8.73 -39.29 -0.34 4.07 16 31 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 33 H 0.07 0.81 7.80 -51.93 -0.41 0.40 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.04 0.40 7.77 -51.93 -0.40 0.00 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.71 7.97 -51.93 -0.41 0.30 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.43 7.81 -51.93 -0.41 0.02 16 LS Contribution 341.86 15.07 5.15 5.15 Total: -1.00 -30.50 341.86 -10.99 -41.49 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -8.24 Total: -0.75 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -2.09 Total: -19.62 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: -1.15 Total: -43.64 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.50 -10.99 -41.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578448.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.097 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds