Wall clock time and date at job start Mon Mar 30 2020 03:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99968 * 2 1 4 4 H 1.48506 * 109.47044 * 269.99523 * 3 2 1 5 5 H 1.48495 * 109.47209 * 29.99827 * 3 2 1 6 6 H 1.48503 * 109.47215 * 149.99668 * 3 2 1 7 7 C 1.37877 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00377 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99678 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46935 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47244 * 180.02562 * 10 9 7 12 12 N 1.46893 * 109.47637 * 180.02562 * 11 10 9 13 13 C 1.46895 * 111.00373 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47456 * 179.97438 * 13 12 11 15 15 H 1.08997 * 110.64240 * 303.30745 * 14 13 12 16 16 C 1.54596 * 110.72137 * 66.45201 * 14 13 12 17 17 C 1.53994 * 105.13959 * 140.49687 * 16 14 13 18 18 N 1.47898 * 107.05662 * 1.22333 * 17 16 14 19 19 C 1.46902 * 110.99850 * 214.15695 * 18 17 16 20 20 C 1.53005 * 117.49828 * 291.78714 * 19 18 17 21 21 C 1.53003 * 60.00047 * 252.51509 * 20 19 18 22 22 C 1.48529 * 105.82071 * 334.67288 * 18 17 16 23 23 H 0.97001 * 120.00082 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47164 * 60.00264 * 9 7 2 25 25 H 1.08995 * 109.47041 * 300.00323 * 9 7 2 26 26 H 1.08998 * 109.47122 * 60.00063 * 10 9 7 27 27 H 1.08995 * 109.47376 * 299.99942 * 10 9 7 28 28 H 1.09006 * 109.47067 * 59.99586 * 11 10 9 29 29 H 1.09005 * 109.47260 * 299.99995 * 11 10 9 30 30 H 1.00907 * 110.99743 * 303.95755 * 12 11 10 31 31 H 1.09003 * 109.47484 * 59.99991 * 13 12 11 32 32 H 1.09002 * 109.47108 * 299.99846 * 13 12 11 33 33 H 1.08994 * 110.31134 * 21.57900 * 16 14 13 34 34 H 1.09006 * 110.31133 * 259.41189 * 16 14 13 35 35 H 1.09005 * 109.91676 * 241.86969 * 17 16 14 36 36 H 1.08997 * 110.08205 * 120.66878 * 17 16 14 37 37 H 1.08996 * 115.56406 * 77.47925 * 19 18 17 38 38 H 1.08997 * 117.49524 * 145.02766 * 20 19 18 39 39 H 1.08998 * 117.49746 * 359.97438 * 20 19 18 40 40 H 1.08996 * 117.50523 * 107.49510 * 21 20 19 41 41 H 1.09006 * 117.49436 * 252.49496 * 21 20 19 42 42 H 1.09000 * 110.66803 * 157.64485 * 22 18 17 43 43 H 1.09002 * 110.66776 * 280.76920 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6367 0.0022 12 7 6.0412 -4.0216 0.0015 13 6 7.5096 -4.0608 0.0033 14 6 7.9810 -5.5164 0.0031 15 1 7.5655 -6.0550 0.8547 16 6 7.6015 -6.2141 -1.3233 17 6 8.8123 -7.0991 -1.6729 18 7 9.8013 -6.9302 -0.5863 19 6 11.1730 -7.0046 -1.1067 20 6 11.6568 -8.3577 -1.6322 21 6 12.1901 -7.8180 -0.3035 22 6 9.5282 -5.5958 0.0060 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6801 0.8911 25 1 3.8751 -0.6804 -0.8888 26 1 3.6585 -3.1502 -0.8892 27 1 3.6578 -3.1506 0.8907 28 1 5.9141 -2.1231 0.8927 29 1 5.9156 -2.1225 -0.8873 30 1 5.6650 -4.5385 0.7822 31 1 7.8855 -3.5577 0.8942 32 1 7.8876 -3.5560 -0.8858 33 1 7.4354 -5.4740 -2.1060 34 1 6.7111 -6.8278 -1.1867 35 1 9.2443 -6.7796 -2.6213 36 1 8.5063 -8.1433 -1.7375 37 1 11.5326 -6.1097 -1.6145 38 1 12.3347 -8.3528 -2.4857 39 1 10.9574 -9.1927 -1.5914 40 1 11.8415 -8.2979 0.6109 41 1 13.2189 -7.4584 -0.2830 42 1 9.9144 -5.5402 1.0238 43 1 9.9551 -4.8059 -0.6121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578448.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:57 Heat of formation + Delta-G solvation = -6.480497 kcal Electronic energy + Delta-G solvation = -18000.880753 eV Core-core repulsion = 15272.985433 eV Total energy + Delta-G solvation = -2727.895320 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.33941 -38.08663 -36.82688 -35.32019 -33.57593 -31.36990 -30.19041 -28.34592 -25.29642 -23.58040 -23.34194 -22.93768 -21.99025 -21.43414 -20.61729 -18.89324 -17.57440 -16.89876 -16.73061 -16.41548 -15.98835 -15.39533 -15.16549 -14.89601 -14.73779 -14.50531 -14.14883 -13.67747 -13.40392 -13.34947 -12.87133 -12.69676 -12.63807 -12.49478 -12.36149 -12.11653 -11.84749 -11.77637 -11.54502 -11.47276 -11.38809 -11.31909 -11.20265 -10.91951 -10.76385 -9.42813 -9.31925 -8.29325 -6.33670 1.35905 1.37931 1.50128 2.36492 2.81016 2.85544 3.05741 3.22698 3.76660 3.81935 3.93409 4.01454 4.13852 4.19841 4.29300 4.32967 4.37492 4.48825 4.55684 4.65376 4.67711 4.72471 4.77698 4.79565 4.87126 4.90997 4.97810 5.02590 5.05952 5.10773 5.13476 5.28628 5.30398 5.37427 5.52240 5.61768 5.66668 5.87338 6.10229 6.15367 6.30017 6.49455 6.74764 7.30819 8.87687 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.063255 B = 0.002755 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.547321 B =10162.173381 C =10377.234623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.001 4.001 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.245 1.245 7 C -0.534 4.534 8 H 0.029 0.971 9 C -0.011 4.011 10 C -0.090 4.090 11 C 0.071 3.929 12 N -0.693 5.693 13 C 0.072 3.928 14 C -0.082 4.082 15 H 0.079 0.921 16 C -0.112 4.112 17 C 0.041 3.959 18 N -0.501 5.501 19 C -0.021 4.021 20 C -0.166 4.166 21 C -0.159 4.159 22 C 0.049 3.951 23 H 0.266 0.734 24 H 0.020 0.980 25 H 0.019 0.981 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.031 0.969 29 H 0.068 0.932 30 H 0.343 0.657 31 H 0.035 0.965 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.045 0.955 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.936 -13.588 -1.499 30.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.197 4.197 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.169 1.169 7 C -0.572 4.572 8 H 0.047 0.953 9 C -0.049 4.049 10 C -0.129 4.129 11 C -0.059 4.059 12 N -0.324 5.324 13 C -0.058 4.058 14 C -0.101 4.101 15 H 0.098 0.902 16 C -0.150 4.150 17 C -0.087 4.087 18 N -0.225 5.225 19 C -0.130 4.130 20 C -0.203 4.203 21 C -0.196 4.196 22 C -0.079 4.079 23 H 0.075 0.925 24 H 0.038 0.962 25 H 0.037 0.963 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.161 0.839 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.126 0.874 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.126 0.874 42 H 0.103 0.897 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 26.708 -13.978 -1.806 30.199 hybrid contribution -0.253 1.576 0.243 1.614 sum 26.456 -12.402 -1.563 29.260 Atomic orbital electron populations 1.70082 1.08374 1.28181 1.52747 1.26101 0.95703 1.03779 0.94128 0.85579 0.79454 0.77883 0.79230 1.19122 1.20955 1.16859 1.21529 0.92323 0.93039 1.50297 0.95265 1.19497 0.93747 0.95147 0.96470 1.21259 0.94078 0.96802 1.00715 1.21870 0.94504 0.89248 1.00235 1.60430 1.08053 1.13441 1.50481 1.21921 0.87352 0.95882 1.00605 1.21981 0.94555 0.94926 0.98653 0.90230 1.22279 0.97462 0.98272 0.97001 1.22812 0.92197 1.00594 0.93076 1.64546 1.01314 1.29270 1.27418 1.22689 0.90012 0.95843 1.04479 1.23047 1.03274 0.95812 0.98207 1.23062 0.98113 1.02727 0.95714 1.23156 0.94784 0.89552 1.00403 0.92507 0.96182 0.96310 0.93336 0.93501 0.95107 0.91361 0.83876 0.94658 0.91330 0.91737 0.91300 0.93663 0.90507 0.89336 0.87401 0.88862 0.88838 0.87409 0.89652 0.93297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 2 C 0.00 -0.05 5.47 84.65 0.46 0.42 16 3 Si 0.96 44.80 27.47 68.60 1.88 46.68 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.25 -10.58 6.54 99.48 0.65 -9.93 16 7 C -0.53 -31.63 9.66 25.60 0.25 -31.38 16 8 H 0.03 1.91 7.99 -2.91 -0.02 1.88 16 9 C -0.01 -0.51 4.04 29.85 0.12 -0.39 16 10 C -0.09 -3.57 5.41 30.59 0.17 -3.41 16 11 C 0.07 2.16 5.68 86.30 0.49 2.65 16 12 N -0.69 -17.88 6.31 -513.89 -3.24 -21.12 16 13 C 0.07 1.49 5.03 86.30 0.43 1.92 16 14 C -0.08 -1.51 3.24 -9.59 -0.03 -1.54 16 15 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 16 C -0.11 -2.16 6.33 31.47 0.20 -1.96 16 17 C 0.04 0.72 6.48 86.45 0.56 1.28 16 18 N -0.50 -8.92 5.42 -857.87 -4.65 -13.57 16 19 C -0.02 -0.32 4.87 44.92 0.22 -0.10 16 20 C -0.17 -2.10 10.19 30.60 0.31 -1.79 16 21 C -0.16 -2.02 10.46 30.60 0.32 -1.70 16 22 C 0.05 0.83 6.01 86.65 0.52 1.35 16 23 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 24 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 25 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 26 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.34 8.44 8.73 -89.69 -0.78 7.66 16 31 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 1.45 8.08 -2.39 -0.02 1.43 16 33 H 0.06 1.36 7.80 -2.39 -0.02 1.34 16 34 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.04 0.78 7.77 -2.38 -0.02 0.76 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.09 1.30 7.97 -2.39 -0.02 1.28 16 38 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.11 1.04 8.14 -2.38 -0.02 1.03 16 42 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.05 0.81 7.81 -2.39 -0.02 0.79 16 Total: -1.00 -65.66 341.86 -1.58 -67.25 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.11 Total: 16.07 kcal Atomic # 6 Polarization: -38.67 SS G_CDS: 4.02 Total: -34.65 kcal Atomic # 7 Polarization: -87.76 SS G_CDS: -7.59 Total: -95.35 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.68 kcal Total: -65.66 -1.58 -67.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578448.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.765 kcal (2) G-P(sol) polarization free energy of solvation -65.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds