Wall clock time and date at job start Mon Mar 30 2020 04:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47502 * 2 1 4 4 H 1.09002 * 109.47506 * 60.48531 * 3 2 1 5 5 C 1.50701 * 109.47174 * 180.48680 * 3 2 1 6 6 H 1.08007 * 120.00093 * 119.56123 * 5 3 2 7 7 C 1.37876 * 119.99926 * 299.55548 * 5 3 2 8 8 N 1.31512 * 120.00052 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99852 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47276 * 60.00218 * 9 7 5 11 11 H 1.48499 * 109.46666 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46995 * 299.99695 * 9 7 5 13 13 N 1.46897 * 109.47039 * 300.48512 * 3 2 1 14 14 C 1.47442 * 111.00275 * 316.89058 * 13 3 2 15 15 C 1.54317 * 107.23823 * 123.25699 * 14 13 3 16 16 C 1.55139 * 103.01569 * 22.28217 * 15 14 13 17 17 C 1.47846 * 110.99948 * 77.73319 * 13 3 2 18 18 H 1.08995 * 110.37446 * 332.57223 * 17 13 3 19 19 C 1.52998 * 110.37466 * 94.80875 * 17 13 3 20 20 H 1.08995 * 110.46551 * 56.42840 * 19 17 13 21 21 C 1.54382 * 110.41146 * 294.01033 * 19 17 13 22 22 C 1.54252 * 105.15187 * 217.42240 * 21 19 17 23 23 C 1.54383 * 105.06099 * 359.95096 * 22 21 19 24 24 N 1.48559 * 104.59485 * 23.85284 * 23 22 21 25 25 H 1.09005 * 109.46647 * 309.85604 * 1 2 3 26 26 H 1.09003 * 109.47126 * 69.85409 * 1 2 3 27 27 H 1.08995 * 109.47221 * 189.85945 * 1 2 3 28 28 H 1.09003 * 109.47281 * 239.99578 * 2 1 3 29 29 H 1.09005 * 109.47147 * 120.00294 * 2 1 3 30 30 H 0.97005 * 120.00142 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.88713 * 242.66378 * 14 13 3 32 32 H 1.09008 * 109.88721 * 3.84957 * 14 13 3 33 33 H 1.08994 * 110.70980 * 140.67031 * 15 14 13 34 34 H 1.08995 * 110.70279 * 263.73124 * 15 14 13 35 35 H 1.08997 * 110.99151 * 206.25589 * 16 15 14 36 36 H 1.09001 * 110.98977 * 82.44304 * 16 15 14 37 37 H 1.09000 * 110.32370 * 98.47206 * 21 19 17 38 38 H 1.09005 * 110.32207 * 336.36637 * 21 19 17 39 39 H 1.09004 * 110.32655 * 118.84546 * 22 21 19 40 40 H 1.09004 * 110.32575 * 241.05103 * 22 21 19 41 41 H 1.08997 * 110.41344 * 142.63771 * 23 22 21 42 42 H 1.09007 * 110.40995 * 264.95369 * 23 22 21 43 43 H 1.00888 * 111.00220 * 80.07638 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6839 1.9538 0.8943 5 6 3.5470 1.4424 -0.0121 6 1 4.0806 1.9061 -0.8287 7 6 4.2447 0.8504 1.0194 8 7 3.5950 0.2863 2.0140 9 14 6.1126 0.8510 1.0048 10 1 6.6072 2.2511 0.9944 11 1 6.6172 0.1562 2.2163 12 1 6.5983 0.1453 -0.2083 13 7 1.5409 2.1383 -1.1935 14 6 1.6495 1.2818 -2.3887 15 6 0.2361 1.1639 -2.9968 16 6 -0.4891 2.4177 -2.4410 17 6 0.1261 2.5327 -1.0240 18 1 -0.3767 1.8549 -0.3341 19 6 0.0317 3.9733 -0.5176 20 1 0.5538 4.6500 -1.1940 21 6 0.6138 4.0821 0.9081 22 6 -0.2950 5.0921 1.6386 23 6 -1.3507 5.5112 0.5930 24 7 -1.3908 4.3821 -0.3717 25 1 -0.3633 0.6586 0.7889 26 1 -0.3633 0.3539 -0.9648 27 1 -0.3633 -1.0124 0.1760 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 4.0858 -0.1305 2.7395 31 1 2.3271 1.7373 -3.1110 32 1 2.0149 0.2946 -2.1055 33 1 0.2809 1.1954 -4.0853 34 1 -0.2537 0.2507 -2.6589 35 1 -1.5654 2.2544 -2.3872 36 1 -0.2589 3.2992 -3.0393 37 1 1.6383 4.4522 0.8715 38 1 0.5795 3.1130 1.4060 39 1 -0.7767 4.6183 2.4940 40 1 0.2835 5.9580 1.9606 41 1 -2.3238 5.6415 1.0664 42 1 -1.0461 6.4305 0.0926 43 1 -1.9495 3.6215 -0.0151 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051360222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:27 Heat of formation + Delta-G solvation = 23.218246 kcal Electronic energy + Delta-G solvation = -20637.919870 eV Core-core repulsion = 17911.312385 eV Total energy + Delta-G solvation = -2726.607485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.71382 -37.46393 -33.87929 -31.52346 -30.26022 -29.96654 -29.24064 -26.33864 -26.14006 -23.02815 -21.84425 -21.36083 -20.09388 -19.35192 -18.80636 -16.26506 -16.04265 -15.70788 -14.87291 -14.50069 -13.95965 -13.77801 -13.47440 -13.08460 -12.87610 -12.59822 -11.97001 -11.91881 -11.76102 -11.44028 -11.19679 -11.18650 -10.93824 -10.87764 -10.73855 -10.59179 -10.41013 -10.20828 -10.15932 -9.91765 -9.79927 -9.62406 -9.23846 -8.77587 -8.40557 -8.28849 -6.98883 -5.98428 -4.00489 3.33767 3.37946 3.41491 4.37458 4.48811 5.04827 5.14030 5.24396 5.26784 5.31630 5.38119 5.44439 5.65174 5.79099 5.82150 5.89681 5.98271 6.03907 6.08802 6.14387 6.19125 6.29752 6.31339 6.35730 6.42080 6.49151 6.58733 6.62114 6.70632 6.77811 6.79719 6.93336 7.08679 7.12725 7.28443 7.45797 7.63037 7.74563 7.92206 8.21842 8.44031 8.65444 9.06776 9.64239 11.08306 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.008308 C = 0.006889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.442174 B = 3369.529964 C = 4063.442552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.154 4.154 3 C 0.207 3.793 4 H 0.048 0.952 5 C -0.494 4.494 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.512 5.512 14 C 0.042 3.958 15 C -0.148 4.148 16 C -0.112 4.112 17 C 0.048 3.952 18 H 0.077 0.923 19 C 0.091 3.909 20 H 0.085 0.915 21 C -0.146 4.146 22 C -0.159 4.159 23 C 0.041 3.959 24 N -0.666 5.666 25 H 0.043 0.957 26 H 0.058 0.942 27 H 0.031 0.969 28 H 0.045 0.955 29 H 0.094 0.906 30 H 0.259 0.741 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.165 4.380 -3.868 10.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.193 4.193 3 C 0.100 3.900 4 H 0.065 0.935 5 C -0.532 4.532 6 H 0.078 0.922 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.236 5.236 14 C -0.086 4.086 15 C -0.186 4.186 16 C -0.150 4.150 17 C -0.061 4.061 18 H 0.095 0.905 19 C -0.019 4.019 20 H 0.103 0.897 21 C -0.185 4.185 22 C -0.199 4.199 23 C -0.089 4.089 24 N -0.293 5.293 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.112 0.888 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.883 5.129 -4.400 11.162 hybrid contribution 0.873 -1.254 1.196 1.940 sum -8.011 3.875 -3.204 9.458 Atomic orbital electron populations 1.22404 0.99980 0.99242 1.00595 1.22307 0.91330 1.02770 1.02914 1.19603 0.94663 0.88099 0.87626 0.93477 1.21103 0.90696 1.34879 1.06551 0.92188 1.24913 0.98228 0.95602 0.95562 1.69868 1.35079 1.38204 1.10446 0.86634 0.85926 0.78131 0.77125 1.20352 1.21532 1.20446 1.63557 1.14669 1.40777 1.04640 1.22814 0.94756 0.98165 0.92855 1.22952 0.97784 0.98064 0.99822 1.22574 0.98480 0.97638 0.96304 1.23184 0.91542 0.94776 0.96557 0.90533 1.22531 0.87123 0.96409 0.95806 0.89661 1.22961 1.00036 0.99365 0.96140 1.22948 0.98273 0.99706 0.98940 1.22952 0.98015 0.95862 0.92079 1.63483 1.10297 1.10237 1.45309 0.93788 0.92372 0.95037 0.93648 0.88803 0.93092 0.92456 0.91015 0.92151 0.91848 0.92052 0.91315 0.90636 0.90800 0.92258 0.91746 0.91626 0.90771 0.85537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 8.10 37.16 0.30 -2.84 16 2 C -0.15 -3.50 4.74 -26.73 -0.13 -3.63 16 3 C 0.21 4.89 1.75 -68.87 -0.12 4.77 16 4 H 0.05 1.21 4.99 -51.93 -0.26 0.96 16 5 C -0.49 -13.23 8.47 -34.44 -0.29 -13.53 16 6 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 7 C 0.06 1.56 5.30 -17.82 -0.09 1.46 16 8 N -0.90 -24.99 11.36 55.43 0.63 -24.36 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.51 -10.52 4.64 -216.85 -1.01 -11.53 16 14 C 0.04 0.80 5.86 -2.84 -0.02 0.78 16 15 C -0.15 -2.31 6.26 -24.91 -0.16 -2.46 16 16 C -0.11 -1.72 6.07 -24.59 -0.15 -1.87 16 17 C 0.05 0.84 1.22 -66.19 -0.08 0.76 16 18 H 0.08 1.38 3.60 -51.93 -0.19 1.20 16 19 C 0.09 1.51 2.95 -65.98 -0.19 1.32 16 20 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 21 C -0.15 -2.55 5.52 -25.35 -0.14 -2.69 16 22 C -0.16 -2.24 7.00 -25.35 -0.18 -2.42 16 23 C 0.04 0.52 7.47 -2.18 -0.02 0.51 16 24 N -0.67 -9.46 7.20 -102.63 -0.74 -10.20 16 25 H 0.04 0.83 7.03 -51.93 -0.36 0.47 16 26 H 0.06 1.01 2.89 -51.93 -0.15 0.86 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 1.04 5.60 -51.93 -0.29 0.75 16 29 H 0.09 2.43 6.12 -51.93 -0.32 2.12 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.48 4.86 -51.92 -0.25 1.23 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.97 6.46 -51.93 -0.34 0.64 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.08 8.06 -51.93 -0.42 0.66 16 37 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.07 1.46 5.82 -51.93 -0.30 1.15 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.93 8.14 -51.92 -0.42 0.50 16 43 H 0.33 4.46 8.64 -39.30 -0.34 4.12 16 LS Contribution 306.37 15.07 4.62 4.62 Total: -1.00 -26.69 306.37 -9.77 -36.46 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -6.99 Total: 8.53 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -1.26 Total: -19.83 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -1.11 Total: -46.09 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -26.69 -9.77 -36.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051360222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.681 kcal (2) G-P(sol) polarization free energy of solvation -26.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds