Wall clock time and date at job start Mon Mar 30 2020 04:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52990 * 109.47251 * 2 1 4 4 H 1.09000 * 109.47213 * 309.50529 * 3 2 1 5 5 C 1.50696 * 109.47420 * 189.50245 * 3 2 1 6 6 H 1.08003 * 120.00569 * 244.77321 * 5 3 2 7 7 C 1.37878 * 119.99931 * 64.77064 * 5 3 2 8 8 N 1.31512 * 119.99905 * 0.67824 * 7 5 3 9 9 Si 1.86799 * 120.00082 * 180.67694 * 7 5 3 10 10 H 1.48508 * 109.46979 * 94.98694 * 9 7 5 11 11 H 1.48501 * 109.47394 * 214.98505 * 9 7 5 12 12 H 1.48500 * 109.47129 * 334.99149 * 9 7 5 13 13 N 1.46905 * 109.47088 * 69.50036 * 3 2 1 14 14 C 1.47849 * 110.99791 * 9.67714 * 13 3 2 15 15 C 1.54903 * 104.79186 * 213.63298 * 14 13 3 16 16 C 1.55143 * 101.65537 * 37.06732 * 15 14 13 17 17 C 1.47439 * 111.00327 * 248.82800 * 13 3 2 18 18 H 1.09001 * 109.89301 * 242.66322 * 17 13 3 19 19 C 1.53000 * 109.88885 * 3.69265 * 17 13 3 20 20 H 1.09004 * 109.88086 * 43.77448 * 19 17 13 21 21 C 1.54324 * 109.88624 * 282.74548 * 19 17 13 22 22 C 1.55391 * 102.90049 * 218.40673 * 21 19 17 23 23 C 1.54912 * 101.74241 * 35.48249 * 22 21 19 24 24 N 1.47440 * 109.88805 * 164.81190 * 19 17 13 25 25 H 1.08997 * 109.47303 * 67.39960 * 1 2 3 26 26 H 1.09001 * 109.47210 * 187.39822 * 1 2 3 27 27 H 1.08998 * 109.46968 * 307.39247 * 1 2 3 28 28 H 1.08998 * 109.47108 * 240.00195 * 2 1 3 29 29 H 1.09003 * 109.47018 * 120.00829 * 2 1 3 30 30 H 0.97007 * 119.99741 * 179.97438 * 8 7 5 31 31 H 1.09000 * 110.37083 * 332.46267 * 14 13 3 32 32 H 1.08998 * 110.37532 * 94.80511 * 14 13 3 33 33 H 1.09003 * 110.99483 * 278.97410 * 15 14 13 34 34 H 1.09009 * 111.02370 * 155.17292 * 15 14 13 35 35 H 1.08997 * 110.70690 * 205.96201 * 16 15 14 36 36 H 1.09004 * 110.70306 * 82.73206 * 16 15 14 37 37 H 1.08998 * 110.70610 * 336.69397 * 21 19 17 38 38 H 1.09001 * 110.70050 * 99.92749 * 21 19 17 39 39 H 1.08999 * 110.87700 * 277.39629 * 22 21 19 40 40 H 1.08997 * 111.05709 * 153.65221 * 22 21 19 41 41 H 1.09003 * 110.37323 * 204.19274 * 23 22 21 42 42 H 1.08997 * 110.46357 * 81.89430 * 23 22 21 43 43 H 1.00905 * 110.99701 * 240.68179 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5448 2.0029 -0.7929 5 6 3.5286 1.4489 -0.2346 6 1 4.1955 1.8027 0.5378 7 6 4.0392 1.0032 -1.4352 8 7 3.2265 0.5848 -2.3807 9 14 5.8855 0.9935 -1.7189 10 1 6.4292 -0.3497 -1.3943 11 1 6.1695 1.3119 -3.1414 12 1 6.5257 2.0107 -0.8467 13 7 1.7459 2.0657 1.2973 14 6 1.2674 1.0616 2.2713 15 6 0.2456 1.8216 3.1532 16 6 -0.4389 2.7471 2.1131 17 6 0.7176 3.1133 1.1593 18 1 1.1348 4.0813 1.4368 19 6 0.2118 3.1592 -0.2839 20 1 0.0464 2.1463 -0.6511 21 6 1.2420 3.8802 -1.1786 22 6 0.3461 4.7014 -2.1468 23 6 -0.8308 5.1032 -1.2231 24 7 -1.0442 3.9285 -0.3510 25 1 -0.3634 0.3949 -0.9487 26 1 -0.3634 -1.0191 0.1323 27 1 -0.3633 0.6241 0.8165 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 3.5857 0.2716 -3.2255 31 1 0.7813 0.2338 1.7549 32 1 2.0958 0.6971 2.8786 33 1 0.7516 2.4055 3.9222 34 1 -0.4743 1.1346 3.5981 35 1 -0.8382 3.6395 2.5951 36 1 -1.2243 2.2121 1.5791 37 1 1.8730 4.5410 -0.5842 38 1 1.8471 3.1588 -1.7278 39 1 -0.0008 4.0825 -2.9743 40 1 0.8720 5.5824 -2.5147 41 1 -1.7247 5.3050 -1.8133 42 1 -0.5660 5.9758 -0.6261 43 1 -1.8010 3.3560 -0.6942 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051360223.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:30 Heat of formation + Delta-G solvation = 54.569889 kcal Electronic energy + Delta-G solvation = -20999.952663 eV Core-core repulsion = 18274.704687 eV Total energy + Delta-G solvation = -2725.247976 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.11515 -37.09299 -34.00890 -31.69246 -30.70269 -29.78063 -28.97441 -26.35554 -25.99063 -22.87866 -21.52276 -21.37932 -20.20673 -19.74430 -17.76533 -17.10514 -15.89032 -15.38582 -14.89541 -14.74297 -14.27769 -13.47053 -13.11038 -12.87745 -12.81057 -12.22900 -12.09653 -11.96908 -11.61206 -11.31195 -11.28331 -11.11399 -11.00155 -10.75413 -10.65448 -10.53753 -10.32709 -10.06950 -9.78862 -9.77429 -9.61045 -9.57398 -9.35626 -8.83104 -8.31374 -7.98457 -6.90330 -5.93995 -3.94128 3.33750 3.41139 3.46367 4.45887 4.54848 5.09758 5.24141 5.27132 5.35116 5.40925 5.47680 5.51396 5.73588 5.85413 5.89383 5.96464 6.02457 6.08693 6.17490 6.19917 6.26735 6.30246 6.39459 6.42279 6.49559 6.56362 6.66454 6.76828 6.80283 6.84756 6.92004 7.00285 7.04659 7.21243 7.26428 7.56294 7.71268 7.77201 7.97655 8.33472 8.44444 8.71050 9.14032 9.69176 11.12059 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018804 B = 0.009808 C = 0.007677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.691072 B = 2854.199501 C = 3646.509086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.142 4.142 3 C 0.167 3.833 4 H 0.080 0.920 5 C -0.480 4.480 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.889 3.111 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.514 5.514 14 C 0.012 3.988 15 C -0.137 4.137 16 C -0.116 4.116 17 C 0.093 3.907 18 H 0.067 0.933 19 C 0.052 3.948 20 H 0.087 0.913 21 C -0.133 4.133 22 C -0.158 4.158 23 C 0.050 3.950 24 N -0.682 5.682 25 H 0.043 0.957 26 H 0.035 0.965 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.043 0.957 30 H 0.257 0.743 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.602 4.082 3.292 10.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.181 4.181 3 C 0.061 3.939 4 H 0.097 0.903 5 C -0.520 4.520 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.541 5.541 9 Si 0.717 3.283 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.238 5.238 14 C -0.115 4.115 15 C -0.176 4.176 16 C -0.155 4.155 17 C -0.016 4.016 18 H 0.085 0.915 19 C -0.057 4.057 20 H 0.104 0.896 21 C -0.171 4.171 22 C -0.197 4.197 23 C -0.079 4.079 24 N -0.310 5.310 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.018 4.589 3.907 10.031 hybrid contribution 0.404 -0.864 -1.438 1.725 sum -7.614 3.726 2.469 8.829 Atomic orbital electron populations 1.22333 0.99664 0.99861 1.00498 1.22117 0.91464 1.02332 1.02216 1.20383 0.96685 0.89972 0.86847 0.90342 1.21240 0.91732 1.39769 0.99215 0.92243 1.24906 0.97433 0.96014 0.96178 1.69904 1.33846 1.44795 1.05536 0.86622 0.86336 0.78153 0.77140 1.21089 1.21535 1.19932 1.63984 1.37034 1.11147 1.11675 1.23732 0.96743 0.96712 0.94336 1.22788 0.98193 0.98519 0.98057 1.22618 0.97748 0.98716 0.96408 1.22358 0.90052 0.96891 0.92306 0.91505 1.23028 0.88383 0.97544 0.96750 0.89552 1.23127 0.97432 0.99451 0.97053 1.23219 0.97804 1.00177 0.98508 1.22805 0.96995 0.94785 0.93334 1.61625 1.07131 1.09804 1.52427 0.93757 0.94596 0.92361 0.89378 0.93846 0.93282 0.90056 0.92099 0.91912 0.92356 0.92008 0.92057 0.91267 0.87579 0.91983 0.91521 0.92505 0.91127 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 7.60 37.16 0.28 -2.87 16 2 C -0.14 -3.22 4.77 -26.74 -0.13 -3.35 16 3 C 0.17 3.91 1.22 -68.87 -0.08 3.83 16 4 H 0.08 1.87 1.94 -51.93 -0.10 1.77 16 5 C -0.48 -12.89 8.69 -34.44 -0.30 -13.19 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.05 1.46 5.26 -17.82 -0.09 1.36 16 8 N -0.90 -24.61 11.71 55.43 0.65 -23.96 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.51 -10.92 5.00 -216.83 -1.08 -12.00 16 14 C 0.01 0.23 5.00 -2.30 -0.01 0.22 16 15 C -0.14 -2.18 7.00 -24.59 -0.17 -2.35 16 16 C -0.12 -1.88 5.23 -24.91 -0.13 -2.01 16 17 C 0.09 1.75 2.93 -66.73 -0.20 1.55 16 18 H 0.07 1.33 7.79 -51.93 -0.40 0.92 16 19 C 0.05 0.94 2.16 -66.72 -0.14 0.80 16 20 H 0.09 1.70 3.28 -51.93 -0.17 1.53 16 21 C -0.13 -2.54 5.46 -24.77 -0.14 -2.67 16 22 C -0.16 -2.46 7.08 -24.45 -0.17 -2.63 16 23 C 0.05 0.70 7.58 -2.29 -0.02 0.68 16 24 N -0.68 -10.32 6.14 -103.81 -0.64 -10.95 16 25 H 0.04 0.85 7.01 -51.93 -0.36 0.48 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 1.04 3.31 -51.93 -0.17 0.87 16 28 H 0.09 2.27 6.32 -51.93 -0.33 1.94 16 29 H 0.04 0.98 6.23 -51.93 -0.32 0.65 16 30 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.08 1.54 2.85 -51.93 -0.15 1.40 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.97 6.59 -51.93 -0.34 0.63 16 37 H 0.07 1.37 7.62 -51.93 -0.40 0.97 16 38 H 0.11 2.44 6.39 -51.93 -0.33 2.11 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.33 4.57 8.91 -39.29 -0.35 4.22 16 LS Contribution 301.31 15.07 4.54 4.54 Total: -1.00 -26.67 301.31 -9.63 -36.31 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -6.78 Total: 10.39 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -1.30 Total: -20.62 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -1.07 Total: -46.92 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -26.67 -9.63 -36.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051360223.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.878 kcal (2) G-P(sol) polarization free energy of solvation -26.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds