Wall clock time and date at job start Mon Mar 30 2020 04:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46983 * 2 1 4 4 H 1.09002 * 110.37565 * 56.57552 * 3 2 1 5 5 C 1.49480 * 110.41754 * 294.21475 * 3 2 1 6 6 H 1.08994 * 107.91164 * 318.66526 * 5 3 2 7 7 C 1.49471 * 128.61863 * 92.86666 * 5 3 2 8 8 N 1.49774 * 104.56640 * 148.23697 * 7 5 3 9 9 C 1.50115 * 107.62157 * 353.23747 * 8 7 5 10 10 C 1.51374 * 102.36840 * 334.19873 * 9 8 7 11 11 H 1.08994 * 111.21073 * 288.50231 * 10 9 8 12 12 C 1.51372 * 124.05126 * 151.56224 * 10 9 8 13 13 N 1.49778 * 110.52171 * 179.01149 * 3 2 1 14 14 C 1.46907 * 110.99406 * 3.94132 * 13 3 2 15 15 C 1.52997 * 109.46429 * 175.94509 * 14 13 3 16 16 C 1.53005 * 109.46882 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47304 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99799 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00035 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99879 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99904 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47185 * 89.99764 * 21 19 17 23 23 H 1.48503 * 109.46719 * 209.99554 * 21 19 17 24 24 H 1.48497 * 109.47029 * 329.99421 * 21 19 17 25 25 H 1.09004 * 109.46873 * 185.11064 * 1 2 3 26 26 H 1.08994 * 109.47475 * 305.10906 * 1 2 3 27 27 H 1.09000 * 109.47060 * 65.11766 * 1 2 3 28 28 H 1.09000 * 109.47389 * 240.00125 * 2 1 3 29 29 H 1.08995 * 109.47122 * 119.99527 * 2 1 3 30 30 H 1.09000 * 110.42354 * 29.46339 * 7 5 3 31 31 H 1.09008 * 110.51693 * 267.05668 * 7 5 3 32 32 H 1.00901 * 111.00290 * 114.88104 * 8 7 5 33 33 H 1.09003 * 110.82318 * 215.97827 * 9 8 7 34 34 H 1.08997 * 110.99820 * 92.50013 * 9 8 7 35 35 H 1.08999 * 110.82695 * 326.65545 * 12 10 9 36 36 H 1.09006 * 110.82747 * 90.21293 * 12 10 9 37 37 H 1.09000 * 109.46828 * 295.94157 * 14 13 3 38 38 H 1.08996 * 109.47391 * 55.94917 * 14 13 3 39 39 H 1.09000 * 109.47328 * 299.99342 * 15 14 13 40 40 H 1.09000 * 109.47474 * 60.00060 * 15 14 13 41 41 H 1.08997 * 109.47081 * 300.00056 * 16 15 14 42 42 H 1.09000 * 109.46988 * 59.99799 * 16 15 14 43 43 H 0.96993 * 120.00022 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6358 1.9879 0.8528 5 6 1.6720 2.1257 -1.2776 6 1 1.8302 1.4197 -2.0929 7 6 0.4656 2.9554 -1.5780 8 7 0.9417 3.9644 -2.5773 9 6 2.4292 3.8092 -2.7065 10 6 2.8112 3.2190 -1.3659 11 1 2.7249 3.9589 -0.5703 12 6 4.0064 2.3163 -1.1469 13 7 3.5373 1.4701 0.0242 14 6 4.0900 0.1112 -0.0533 15 6 5.6164 0.1851 -0.1279 16 6 6.1922 -1.2301 -0.2080 17 6 7.6956 -1.1574 -0.2822 18 1 8.1909 -0.1976 -0.2727 19 6 8.4389 -2.3160 -0.3610 20 7 9.7509 -2.2524 -0.4263 21 14 7.5822 -3.9759 -0.3767 22 1 7.2844 -4.3660 -1.7782 23 1 8.4665 -4.9951 0.2435 24 1 6.3150 -3.8862 0.3922 25 1 -0.3633 -1.0236 0.0915 26 1 -0.3634 0.5910 0.8406 27 1 -0.3633 0.4324 -0.9323 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 0.1114 3.4525 -0.6750 31 1 -0.3248 2.3392 -2.0068 32 1 0.4859 3.8341 -3.4680 33 1 2.9083 4.7770 -2.8546 34 1 2.6817 3.1256 -3.5170 35 1 4.1884 1.6947 -2.0236 36 1 4.8916 2.8998 -0.8937 37 1 3.7964 -0.4515 0.8329 38 1 3.7065 -0.3869 -0.9437 39 1 5.9100 0.7478 -1.0141 40 1 6.0001 0.6832 0.7624 41 1 5.8986 -1.7925 0.6783 42 1 5.8086 -1.7286 -1.0982 43 1 10.2738 -3.0675 -0.4822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085287560.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:26 Heat of formation + Delta-G solvation = 16.990839 kcal Electronic energy + Delta-G solvation = -19402.770870 eV Core-core repulsion = 16675.893344 eV Total energy + Delta-G solvation = -2726.877526 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.88663 -36.87996 -34.29839 -33.25203 -31.93905 -29.79847 -29.40350 -26.76409 -26.28689 -23.59812 -22.76225 -21.14420 -20.60802 -20.15010 -18.95981 -16.70102 -16.51070 -15.91415 -15.50734 -15.14989 -14.40328 -14.20129 -13.95148 -13.68542 -13.42524 -13.14042 -12.66599 -12.59248 -12.31341 -12.10532 -11.74038 -11.56491 -11.52230 -11.38134 -11.18794 -11.04289 -10.84173 -10.79566 -10.49003 -10.17620 -9.93991 -9.68615 -9.55576 -9.15444 -8.80266 -8.52511 -8.10996 -6.02889 -4.00478 3.30335 3.37888 3.41721 3.80537 3.84492 3.94924 4.44080 4.46029 4.78919 4.85943 5.04176 5.11297 5.18742 5.29240 5.30968 5.31793 5.40306 5.49825 5.56779 5.58596 5.63196 5.65157 5.74330 5.77050 5.86227 5.90485 6.03419 6.08164 6.18012 6.21189 6.29869 6.38412 6.53490 6.61071 6.84391 7.01914 7.05021 7.22938 7.35836 7.46737 7.81739 8.56580 9.02733 9.59849 11.10770 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.029410 B = 0.004766 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.820003 B = 5873.560735 C = 6487.933307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.094 3.906 4 H 0.085 0.915 5 C -0.149 4.149 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.682 5.682 9 C 0.058 3.942 10 C -0.122 4.122 11 H 0.095 0.905 12 C 0.058 3.942 13 N -0.519 5.519 14 C 0.044 3.956 15 C -0.101 4.101 16 C -0.012 4.012 17 C -0.518 4.518 18 H 0.071 0.929 19 C 0.065 3.935 20 N -0.905 5.905 21 Si 0.880 3.120 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.266 1.266 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.336 0.664 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.030 0.970 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.015 0.985 42 H 0.007 0.993 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.427 8.822 -2.798 22.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C -0.015 4.015 4 H 0.103 0.897 5 C -0.170 4.170 6 H 0.081 0.919 7 C -0.060 4.060 8 N -0.310 5.310 9 C -0.071 4.071 10 C -0.141 4.141 11 H 0.113 0.887 12 C -0.069 4.069 13 N -0.243 5.243 14 C -0.083 4.083 15 C -0.138 4.138 16 C -0.050 4.050 17 C -0.556 4.556 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.544 5.544 21 Si 0.707 3.293 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.190 1.190 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.150 0.850 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.034 0.966 42 H 0.025 0.975 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.060 9.487 -1.874 22.269 hybrid contribution -0.458 -2.279 -1.388 2.708 sum -20.518 7.208 -3.263 21.991 Atomic orbital electron populations 1.21738 0.95595 1.01549 1.01643 1.22017 0.96026 0.96702 1.02886 1.21532 0.88707 0.95004 0.96224 0.89657 1.22504 0.97107 0.97700 0.99690 0.91851 1.21666 0.95240 0.92069 0.97021 1.63515 1.04388 1.50303 1.12806 1.22239 0.88347 1.00650 0.95841 1.22683 0.95836 0.97232 0.98365 0.88720 1.22721 0.96772 0.94613 0.92796 1.65860 1.04521 1.13182 1.40688 1.22533 0.97146 0.88590 1.00074 1.21515 0.91068 0.99730 1.01534 1.19542 0.96945 0.92545 0.95982 1.21150 0.89487 0.94706 1.50242 0.91044 1.25038 0.94702 0.99144 0.94662 1.69920 1.04953 1.28360 1.51162 0.86777 0.79940 0.84065 0.78494 1.20423 1.21377 1.19037 0.92768 0.92578 0.92980 0.91697 0.90843 0.90353 0.92422 0.84969 0.89791 0.93434 0.92914 0.89344 0.90826 0.95167 0.92943 0.91988 0.96647 0.97457 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.65 37.16 0.36 -0.97 16 2 C -0.14 -1.56 4.18 -26.73 -0.11 -1.67 16 3 C 0.09 1.12 3.32 -67.84 -0.23 0.89 16 4 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 5 C -0.15 -1.60 1.42 -91.27 -0.13 -1.73 16 6 H 0.06 0.75 7.66 -51.93 -0.40 0.35 16 7 C 0.07 0.64 7.08 -3.96 -0.03 0.61 16 8 N -0.68 -6.44 7.57 -111.80 -0.85 -7.29 16 9 C 0.06 0.58 7.34 -2.84 -0.02 0.55 16 10 C -0.12 -1.38 3.23 -89.43 -0.29 -1.67 16 11 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 12 C 0.06 0.78 5.16 -1.80 -0.01 0.78 16 13 N -0.52 -7.55 5.42 -222.83 -1.21 -8.76 16 14 C 0.04 0.73 3.85 -3.82 -0.01 0.72 16 15 C -0.10 -2.03 4.99 -26.73 -0.13 -2.16 16 16 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 17 C -0.52 -15.01 9.66 -34.44 -0.33 -15.34 16 18 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 21 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.44 6.65 -51.93 -0.35 0.10 16 28 H 0.06 0.80 6.48 -51.93 -0.34 0.46 16 29 H 0.07 0.88 6.88 -51.93 -0.36 0.53 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.46 7.50 -51.92 -0.39 0.07 16 32 H 0.34 2.62 8.94 -39.29 -0.35 2.27 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.75 7.66 -51.93 -0.40 0.35 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.21 6.85 -51.93 -0.36 0.85 16 38 H 0.03 0.49 6.56 -51.93 -0.34 0.15 16 39 H 0.05 1.05 6.90 -51.93 -0.36 0.70 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 42 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 321.00 15.07 4.84 4.84 Total: -1.00 -30.49 321.00 -10.05 -40.53 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -7.79 Total: -0.57 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -1.15 Total: -18.57 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: -1.28 Total: -43.54 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.49 -10.05 -40.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085287560.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.525 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds