Wall clock time and date at job start Mon Mar 30 2020 03:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 110.43360 * 2 1 4 4 C 1.50120 * 110.38925 * 237.65583 * 2 1 3 5 5 H 1.09003 * 109.73105 * 321.38834 * 4 2 1 6 6 C 1.50746 * 126.53881 * 97.36303 * 4 2 1 7 7 N 1.50187 * 102.14570 * 154.91491 * 6 4 2 8 8 C 1.49710 * 107.64588 * 334.70590 * 7 6 4 9 9 C 1.50143 * 104.73961 * 352.55100 * 8 7 6 10 10 H 1.08997 * 109.78129 * 279.74293 * 9 8 7 11 11 C 1.50759 * 126.46592 * 143.74713 * 9 8 7 12 12 N 1.49712 * 110.38666 * 122.33925 * 2 1 3 13 13 C 1.46901 * 110.99700 * 4.61120 * 12 2 1 14 14 C 1.53000 * 109.46769 * 189.55606 * 13 12 2 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47291 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47282 * 89.99593 * 20 18 16 22 22 H 1.48498 * 109.47211 * 210.00040 * 20 18 16 23 23 H 1.48506 * 109.46856 * 330.00220 * 20 18 16 24 24 H 1.08998 * 109.46789 * 299.11035 * 1 2 3 25 25 H 1.08993 * 109.46804 * 59.11078 * 1 2 3 26 26 H 1.08997 * 109.46777 * 179.11138 * 1 2 3 27 27 H 1.09002 * 109.47431 * 180.88760 * 3 2 1 28 28 H 1.08997 * 109.46731 * 300.89249 * 3 2 1 29 29 H 1.09000 * 109.46915 * 60.88782 * 3 2 1 30 30 H 1.09002 * 110.86883 * 273.08101 * 6 4 2 31 31 H 1.09002 * 110.86367 * 36.54658 * 6 4 2 32 32 H 1.00893 * 110.99849 * 96.36910 * 7 6 4 33 33 H 1.08995 * 110.37986 * 233.73174 * 8 7 6 34 34 H 1.08996 * 110.37861 * 111.36578 * 8 7 6 35 35 H 1.08997 * 110.86504 * 86.98540 * 11 9 8 36 36 H 1.08999 * 110.86705 * 323.30846 * 11 9 8 37 37 H 1.09002 * 109.47401 * 69.55313 * 13 12 2 38 38 H 1.09001 * 109.46874 * 309.55326 * 13 12 2 39 39 H 1.09001 * 109.47194 * 299.99524 * 14 13 12 40 40 H 1.08992 * 109.47399 * 59.99697 * 14 13 12 41 41 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 42 42 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 43 43 H 0.97000 * 119.99425 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0642 1.4338 0.0000 4 6 2.0530 -0.7528 -1.1888 5 1 1.4297 -1.6278 -1.3737 6 6 2.5112 -0.1592 -2.4965 7 7 3.4630 -1.2051 -3.0021 8 6 3.9849 -1.9551 -1.8162 9 6 3.4625 -1.2013 -0.6274 10 1 4.0860 -0.3267 -0.4420 11 6 3.0038 -1.7961 0.6798 12 7 2.0515 -0.7507 1.1857 13 6 0.9535 -1.3625 1.9459 14 6 1.4932 -1.9134 3.2673 15 6 0.3497 -2.5512 4.0589 16 6 0.8813 -3.0944 5.3602 17 1 1.9300 -2.9951 5.5986 18 6 0.0289 -3.7183 6.2464 19 7 -1.2482 -3.8388 5.9562 20 14 0.6877 -4.3910 7.8597 21 1 0.6049 -3.3395 8.9052 22 1 -0.1213 -5.5654 8.2736 23 1 2.1036 -4.8027 7.6830 24 1 -0.3633 0.5000 0.8979 25 1 -0.3633 0.5276 -0.8819 26 1 -0.3633 -1.0275 -0.0159 27 1 3.1539 1.4156 -0.0159 28 1 1.6965 1.9584 -0.8819 29 1 1.7225 1.9488 0.8978 30 1 1.6723 -0.0340 -3.1812 31 1 3.0225 0.7897 -2.3341 32 1 3.0049 -1.8276 -3.6507 33 1 5.0748 -1.9552 -1.8167 34 1 3.6043 -2.9764 -1.8154 35 1 3.8423 -1.9214 1.3648 36 1 2.4896 -2.7432 0.5162 37 1 0.5175 -2.1749 1.3645 38 1 0.1903 -0.6115 2.1500 39 1 2.2564 -2.6644 3.0632 40 1 1.9291 -1.1011 3.8487 41 1 -0.4138 -1.8006 4.2631 42 1 -0.0860 -3.3637 3.4773 43 1 -1.8479 -4.2773 6.5799 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085289389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:56 Heat of formation + Delta-G solvation = 17.880791 kcal Electronic energy + Delta-G solvation = -19500.024984 eV Core-core repulsion = 16773.186049 eV Total energy + Delta-G solvation = -2726.838935 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.10392 -36.86122 -34.13293 -32.71762 -31.79798 -29.54184 -28.43862 -27.38616 -26.03166 -24.49342 -23.18706 -21.44154 -20.38953 -19.80745 -18.31850 -16.66020 -16.22538 -15.93495 -15.26714 -14.89364 -14.40366 -14.26978 -13.89838 -13.59484 -13.05622 -12.79243 -12.47194 -12.37586 -12.25227 -12.06304 -11.76483 -11.57481 -11.45034 -11.19306 -11.08507 -10.97930 -10.76547 -10.57977 -10.48157 -10.33210 -10.07029 -9.60302 -9.30372 -9.03779 -8.81960 -8.32477 -8.06252 -5.97924 -3.99725 3.33406 3.39336 3.43098 3.80261 3.85622 4.02468 4.48214 4.53419 4.83765 4.93413 5.15668 5.21310 5.28882 5.35724 5.37961 5.42516 5.54371 5.61560 5.62050 5.64784 5.70893 5.80346 5.89796 5.90223 5.93281 6.00624 6.05763 6.14393 6.20804 6.36093 6.40427 6.45614 6.71710 6.82677 7.05483 7.08671 7.24602 7.40187 7.70789 7.85912 8.02803 8.46627 9.07505 9.64190 11.13584 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037139 B = 0.004280 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.749816 B = 6540.261281 C = 6876.370227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.110 3.890 3 C -0.125 4.125 4 C -0.152 4.152 5 H 0.070 0.930 6 C 0.066 3.934 7 N -0.684 5.684 8 C 0.063 3.937 9 C -0.131 4.131 10 H 0.089 0.911 11 C 0.062 3.938 12 N -0.514 5.514 13 C 0.047 3.953 14 C -0.103 4.103 15 C 0.022 3.978 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.336 0.664 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.028 0.972 38 H 0.075 0.925 39 H 0.044 0.956 40 H 0.054 0.946 41 H 0.015 0.985 42 H 0.012 0.988 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.557 7.216 -17.325 19.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.021 3.979 3 C -0.183 4.183 4 C -0.173 4.173 5 H 0.088 0.912 6 C -0.063 4.063 7 N -0.312 5.312 8 C -0.066 4.066 9 C -0.151 4.151 10 H 0.107 0.893 11 C -0.065 4.065 12 N -0.238 5.238 13 C -0.081 4.081 14 C -0.141 4.141 15 C -0.015 4.015 16 C -0.556 4.556 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.719 3.281 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.087 0.913 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.151 0.849 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.046 0.954 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.033 0.967 42 H 0.030 0.970 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.226 7.925 -16.989 20.091 hybrid contribution -1.064 -1.654 0.716 2.093 sum 6.161 6.271 -16.273 18.496 Atomic orbital electron populations 1.22258 0.94764 1.02277 1.02233 1.20919 0.93642 0.94819 0.88550 1.21696 1.01053 0.94245 1.01294 1.23121 0.97455 1.00557 0.96184 0.91198 1.22134 0.94358 0.96121 0.93651 1.63332 1.37397 1.15903 1.14537 1.21815 1.00434 0.95759 0.88625 1.22491 0.96576 1.01046 0.94982 0.89301 1.22272 0.96699 0.93571 0.93981 1.65339 1.16018 1.23464 1.18975 1.22566 0.92836 0.97219 0.95429 1.21614 0.99922 0.99115 0.93461 1.19067 0.92909 0.95332 0.94215 1.21258 0.94831 1.36629 1.02835 0.92702 1.25026 0.94877 0.96223 0.98376 1.69972 1.03260 1.44011 1.36444 0.86604 0.78912 0.78556 0.83998 1.20650 1.21271 1.19881 0.91328 0.92494 0.92310 0.92423 0.92801 0.92154 0.91480 0.89796 0.84910 0.90104 0.92980 0.89777 0.93236 0.95398 0.90621 0.93710 0.92687 0.96686 0.96978 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 7.23 37.16 0.27 -1.66 16 2 C 0.11 1.37 1.07 -131.46 -0.14 1.23 16 3 C -0.13 -1.41 7.94 37.16 0.29 -1.11 16 4 C -0.15 -1.69 2.11 -90.31 -0.19 -1.88 16 5 H 0.07 0.85 7.92 -51.93 -0.41 0.44 16 6 C 0.07 0.63 6.94 -3.11 -0.02 0.61 16 7 N -0.68 -6.61 7.57 -111.79 -0.85 -7.46 16 8 C 0.06 0.63 7.44 -3.67 -0.03 0.60 16 9 C -0.13 -1.51 2.85 -90.30 -0.26 -1.76 16 10 H 0.09 1.08 6.88 -51.93 -0.36 0.73 16 11 C 0.06 0.86 5.66 -3.10 -0.02 0.85 16 12 N -0.51 -7.75 4.96 -216.95 -1.08 -8.83 16 13 C 0.05 0.83 3.73 -3.82 -0.01 0.81 16 14 C -0.10 -2.19 5.21 -26.73 -0.14 -2.33 16 15 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 16 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 17 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 20 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H 0.07 0.89 6.78 -51.93 -0.35 0.54 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.77 6.79 -51.93 -0.35 0.42 16 27 H 0.06 0.66 6.86 -51.93 -0.36 0.30 16 28 H 0.05 0.51 7.84 -51.93 -0.41 0.10 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.82 7.25 -51.93 -0.38 0.44 16 32 H 0.34 2.77 8.94 -39.30 -0.35 2.42 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.05 0.72 7.71 -51.93 -0.40 0.32 16 37 H 0.03 0.50 7.10 -51.93 -0.37 0.13 16 38 H 0.08 1.34 6.01 -51.93 -0.31 1.03 16 39 H 0.04 0.94 7.52 -51.93 -0.39 0.55 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 323.31 15.07 4.87 4.87 Total: -1.00 -30.09 323.31 -9.91 -40.00 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -7.78 Total: -1.05 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -0.79 Total: -17.91 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: -1.19 Total: -42.85 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.09 -9.91 -40.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085289389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.884 kcal (2) G-P(sol) polarization free energy of solvation -30.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds