Wall clock time and date at job start Mon Mar 30 2020 04:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.88914 * 2 1 4 4 C 1.53800 * 109.89799 * 121.05816 * 2 1 3 5 5 H 1.09000 * 112.77691 * 239.74992 * 4 2 1 6 6 C 1.54730 * 108.83820 * 6.49584 * 4 2 1 7 7 N 1.48423 * 103.61983 * 147.29518 * 6 4 2 8 8 C 1.47851 * 105.78183 * 320.80435 * 7 6 4 9 9 C 1.53797 * 107.18123 * 26.44340 * 8 7 6 10 10 H 1.08995 * 112.77817 * 120.35843 * 9 8 7 11 11 C 1.54734 * 108.83840 * 247.10638 * 9 8 7 12 12 N 1.47848 * 109.89616 * 238.76874 * 2 1 3 13 13 C 1.46905 * 110.99845 * 27.54839 * 12 2 1 14 14 C 1.53007 * 109.46765 * 190.00036 * 13 12 2 15 15 C 1.52996 * 109.46738 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47121 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99424 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00350 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99676 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00187 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47097 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47168 * 120.00196 * 20 18 16 23 23 H 1.48494 * 109.47475 * 239.99973 * 20 18 16 24 24 H 1.09001 * 109.46938 * 290.57201 * 1 2 3 25 25 H 1.08997 * 109.47015 * 50.57487 * 1 2 3 26 26 H 1.09002 * 109.46920 * 170.57169 * 1 2 3 27 27 H 1.09000 * 109.47253 * 181.05259 * 3 2 1 28 28 H 1.08999 * 109.47163 * 301.05616 * 3 2 1 29 29 H 1.09001 * 109.47108 * 61.05523 * 3 2 1 30 30 H 1.09000 * 110.59340 * 265.82477 * 6 4 2 31 31 H 1.08999 * 110.59347 * 28.60355 * 6 4 2 32 32 H 1.00903 * 110.99875 * 200.31470 * 7 6 4 33 33 H 1.09005 * 109.89265 * 267.05322 * 8 7 6 34 34 H 1.08998 * 109.89713 * 145.83713 * 8 7 6 35 35 H 1.08995 * 110.59450 * 265.82280 * 11 9 8 36 36 H 1.08996 * 110.59288 * 28.75828 * 11 9 8 37 37 H 1.09000 * 109.46733 * 309.99284 * 13 12 2 38 38 H 1.08991 * 109.47261 * 69.99997 * 13 12 2 39 39 H 1.09005 * 109.46625 * 299.99547 * 14 13 12 40 40 H 1.08993 * 109.47072 * 59.99451 * 14 13 12 41 41 H 1.08998 * 109.47393 * 299.99496 * 15 14 13 42 42 H 1.08997 * 109.47726 * 59.99356 * 15 14 13 43 43 H 0.97003 * 119.99344 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0505 1.4387 0.0000 4 6 2.0535 -0.7461 1.2389 5 1 2.6732 -0.1182 1.8791 6 6 0.8554 -1.3859 1.9801 7 7 1.4248 -2.6292 2.5569 8 6 2.3375 -3.1692 1.5267 9 6 2.8164 -1.9808 0.6761 10 1 3.8992 -1.8572 0.6953 11 6 2.2396 -2.1244 -0.7526 12 7 2.0332 -0.7208 -1.1888 13 6 1.0689 -0.6497 -2.2948 14 6 1.5010 -1.6036 -3.4102 15 6 0.4971 -1.5291 -4.5623 16 6 0.9230 -2.4682 -5.6613 17 1 1.8203 -3.0588 -5.5493 18 6 0.1673 -2.5734 -6.8097 19 7 -0.9250 -1.8538 -6.9462 20 14 0.6957 -3.7369 -8.1722 21 1 1.9501 -4.4259 -7.7760 22 1 -0.3702 -4.7447 -8.4035 23 1 0.9267 -2.9657 -9.4199 24 1 -0.3633 0.3611 0.9621 25 1 -0.3633 0.6526 -0.7938 26 1 -0.3633 -1.0138 -0.1684 27 1 3.1403 1.4308 -0.0189 28 1 1.6756 1.9607 -0.8803 29 1 1.7064 1.9495 0.8993 30 1 0.4966 -0.7260 2.7700 31 1 0.0517 -1.6177 1.2812 32 1 0.6966 -3.2918 2.7781 33 1 1.8064 -3.8847 0.8989 34 1 3.1907 -3.6520 2.0033 35 1 2.9529 -2.6277 -1.4052 36 1 1.2921 -2.6626 -0.7311 37 1 0.0809 -0.9360 -1.9343 38 1 1.0337 0.3689 -2.6811 39 1 2.4891 -1.3173 -3.7706 40 1 1.5363 -2.6222 -3.0238 41 1 -0.4911 -1.8151 -4.2023 42 1 0.4622 -0.5104 -4.9486 43 1 -1.4565 -1.9275 -7.7544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085289397.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:02 Heat of formation + Delta-G solvation = 6.318246 kcal Electronic energy + Delta-G solvation = -19675.898997 eV Core-core repulsion = 16948.558673 eV Total energy + Delta-G solvation = -2727.340324 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.90066 -36.64686 -34.19872 -32.81227 -31.72822 -29.70254 -28.45684 -27.25577 -26.09159 -24.52040 -22.92846 -21.30121 -20.65423 -19.24591 -18.53886 -16.72521 -16.33993 -16.04914 -14.92961 -14.69658 -14.58588 -14.33753 -13.71113 -13.59957 -13.15765 -12.78996 -12.43350 -12.33780 -12.24877 -11.92170 -11.75393 -11.48516 -11.40802 -11.11461 -11.08463 -10.80095 -10.75852 -10.54417 -10.51305 -10.44003 -10.29037 -9.65773 -9.32456 -9.03306 -8.63351 -8.34517 -8.07111 -5.99661 -4.01620 3.30925 3.38372 3.42816 4.03376 4.12649 4.38699 4.46911 4.59764 4.78326 4.99309 5.08350 5.16243 5.23471 5.34974 5.36306 5.47008 5.55455 5.59404 5.65252 5.71166 5.72647 5.81816 5.84215 5.93885 5.98234 6.02319 6.07194 6.21184 6.24017 6.34359 6.40966 6.59742 6.69842 6.82017 7.06724 7.12745 7.27400 7.42522 7.68617 7.83380 8.00811 8.44322 9.05731 9.62459 11.11838 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.031319 B = 0.004653 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.809637 B = 6016.782690 C = 6413.622180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.091 3.909 3 C -0.127 4.127 4 C -0.085 4.085 5 H 0.094 0.906 6 C 0.030 3.970 7 N -0.675 5.675 8 C 0.043 3.957 9 C -0.099 4.099 10 H 0.095 0.905 11 C 0.044 3.956 12 N -0.506 5.506 13 C 0.042 3.958 14 C -0.108 4.108 15 C 0.023 3.977 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.335 0.665 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.039 0.961 38 H 0.070 0.930 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.012 0.988 42 H 0.016 0.984 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.206 2.119 18.370 18.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 C -0.184 4.184 4 C -0.105 4.105 5 H 0.112 0.888 6 C -0.098 4.098 7 N -0.304 5.304 8 C -0.086 4.086 9 C -0.118 4.118 10 H 0.113 0.887 11 C -0.084 4.084 12 N -0.229 5.229 13 C -0.086 4.086 14 C -0.146 4.146 15 C -0.015 4.015 16 C -0.556 4.556 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.150 0.850 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.031 0.969 42 H 0.034 0.966 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.049 2.697 18.470 19.337 hybrid contribution -1.301 -1.356 -1.341 2.308 sum 3.748 1.341 17.129 17.586 Atomic orbital electron populations 1.22575 0.96477 1.01757 1.02057 1.21741 0.92810 0.95246 0.90120 1.21721 1.01503 0.94077 1.01137 1.22872 0.95959 0.96100 0.95554 0.88819 1.23449 0.96541 0.92143 0.97702 1.63044 1.20511 1.07059 1.39751 1.22687 0.97082 0.96274 0.92587 1.22872 1.00567 0.93892 0.94509 0.88662 1.23274 0.99527 0.91097 0.94522 1.64921 1.43521 1.09399 1.05096 1.22560 0.93315 1.01228 0.91474 1.21706 1.00877 0.96651 0.95380 1.19062 0.93586 0.97178 0.91678 1.21286 1.09245 1.23601 1.01434 0.92691 1.25027 0.95028 0.95997 0.98456 1.69982 1.15382 1.40708 1.27532 0.86551 0.78590 0.80873 0.82091 1.19733 1.21065 1.20984 0.92169 0.91855 0.92220 0.92041 0.92525 0.92826 0.90395 0.92425 0.84965 0.93749 0.90567 0.89718 0.93970 0.94286 0.91152 0.92707 0.93609 0.96950 0.96595 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 5.67 37.16 0.21 -1.86 16 2 C 0.09 1.14 0.86 -130.67 -0.11 1.02 16 3 C -0.13 -1.46 8.69 37.15 0.32 -1.14 16 4 C -0.09 -0.96 3.66 -87.87 -0.32 -1.28 16 5 H 0.09 1.02 7.82 -51.93 -0.41 0.62 16 6 C 0.03 0.32 5.56 -2.07 -0.01 0.31 16 7 N -0.68 -7.01 7.51 -110.44 -0.83 -7.84 16 8 C 0.04 0.46 7.06 -2.89 -0.02 0.44 16 9 C -0.10 -1.16 4.12 -87.87 -0.36 -1.52 16 10 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 11 C 0.04 0.61 4.30 -2.07 -0.01 0.60 16 12 N -0.51 -7.63 5.02 -215.38 -1.08 -8.71 16 13 C 0.04 0.73 4.14 -3.82 -0.02 0.72 16 14 C -0.11 -2.28 4.81 -26.73 -0.13 -2.41 16 15 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 16 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 17 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 20 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H 0.06 0.62 7.17 -51.93 -0.37 0.24 16 25 H 0.06 0.82 7.30 -51.93 -0.38 0.44 16 26 H 0.06 0.78 5.70 -51.93 -0.30 0.49 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 31 H 0.06 0.64 5.08 -51.93 -0.26 0.38 16 32 H 0.34 3.00 8.92 -39.29 -0.35 2.65 16 33 H 0.04 0.48 7.32 -51.93 -0.38 0.10 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.24 7.66 -51.93 -0.40 0.85 16 36 H 0.04 0.63 7.39 -51.93 -0.38 0.24 16 37 H 0.04 0.69 5.54 -51.93 -0.29 0.40 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 0.95 6.79 -51.93 -0.35 0.59 16 41 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 319.22 15.07 4.81 4.81 Total: -1.00 -30.08 319.22 -10.02 -40.10 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -7.64 Total: -0.41 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -1.00 Total: -18.32 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: -1.18 Total: -43.02 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.08 -10.02 -40.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085289397.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.414 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds