Wall clock time and date at job start Mon Mar 30 2020 04:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.88914 * 2 1 4 4 C 1.53800 * 109.89799 * 121.05816 * 2 1 3 5 5 H 1.09000 * 112.77691 * 239.74992 * 4 2 1 6 6 C 1.54730 * 108.83820 * 6.49584 * 4 2 1 7 7 N 1.48423 * 103.61983 * 147.29518 * 6 4 2 8 8 C 1.47851 * 105.78183 * 320.80435 * 7 6 4 9 9 C 1.53797 * 107.18123 * 26.44340 * 8 7 6 10 10 H 1.08995 * 112.77817 * 120.35843 * 9 8 7 11 11 C 1.54734 * 108.83840 * 247.10638 * 9 8 7 12 12 N 1.47848 * 109.89616 * 238.76874 * 2 1 3 13 13 C 1.46905 * 110.99845 * 27.54839 * 12 2 1 14 14 C 1.53007 * 109.46765 * 190.00036 * 13 12 2 15 15 C 1.52996 * 109.46738 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47121 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99424 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00350 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99676 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00187 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47097 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47168 * 120.00196 * 20 18 16 23 23 H 1.48494 * 109.47475 * 239.99973 * 20 18 16 24 24 H 1.09001 * 109.46938 * 290.57201 * 1 2 3 25 25 H 1.08997 * 109.47015 * 50.57487 * 1 2 3 26 26 H 1.09002 * 109.46920 * 170.57169 * 1 2 3 27 27 H 1.09000 * 109.47253 * 181.05259 * 3 2 1 28 28 H 1.08999 * 109.47163 * 301.05616 * 3 2 1 29 29 H 1.09001 * 109.47108 * 61.05523 * 3 2 1 30 30 H 1.09000 * 110.59340 * 265.82477 * 6 4 2 31 31 H 1.08999 * 110.59347 * 28.60355 * 6 4 2 32 32 H 1.00903 * 110.99875 * 200.31470 * 7 6 4 33 33 H 1.09005 * 109.89265 * 267.05322 * 8 7 6 34 34 H 1.08998 * 109.89713 * 145.83713 * 8 7 6 35 35 H 1.08995 * 110.59450 * 265.82280 * 11 9 8 36 36 H 1.08996 * 110.59288 * 28.75828 * 11 9 8 37 37 H 1.09000 * 109.46733 * 309.99284 * 13 12 2 38 38 H 1.08991 * 109.47261 * 69.99997 * 13 12 2 39 39 H 1.09005 * 109.46625 * 299.99547 * 14 13 12 40 40 H 1.08993 * 109.47072 * 59.99451 * 14 13 12 41 41 H 1.08998 * 109.47393 * 299.99496 * 15 14 13 42 42 H 1.08997 * 109.47726 * 59.99356 * 15 14 13 43 43 H 0.97003 * 119.99344 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0505 1.4387 0.0000 4 6 2.0535 -0.7461 1.2389 5 1 2.6732 -0.1182 1.8791 6 6 0.8554 -1.3859 1.9801 7 7 1.4248 -2.6292 2.5569 8 6 2.3375 -3.1692 1.5267 9 6 2.8164 -1.9808 0.6761 10 1 3.8992 -1.8572 0.6953 11 6 2.2396 -2.1244 -0.7526 12 7 2.0332 -0.7208 -1.1888 13 6 1.0689 -0.6497 -2.2948 14 6 1.5010 -1.6036 -3.4102 15 6 0.4971 -1.5291 -4.5623 16 6 0.9230 -2.4682 -5.6613 17 1 1.8203 -3.0588 -5.5493 18 6 0.1673 -2.5734 -6.8097 19 7 -0.9250 -1.8538 -6.9462 20 14 0.6957 -3.7369 -8.1722 21 1 1.9501 -4.4259 -7.7760 22 1 -0.3702 -4.7447 -8.4035 23 1 0.9267 -2.9657 -9.4199 24 1 -0.3633 0.3611 0.9621 25 1 -0.3633 0.6526 -0.7938 26 1 -0.3633 -1.0138 -0.1684 27 1 3.1403 1.4308 -0.0189 28 1 1.6756 1.9607 -0.8803 29 1 1.7064 1.9495 0.8993 30 1 0.4966 -0.7260 2.7700 31 1 0.0517 -1.6177 1.2812 32 1 0.6966 -3.2918 2.7781 33 1 1.8064 -3.8847 0.8989 34 1 3.1907 -3.6520 2.0033 35 1 2.9529 -2.6277 -1.4052 36 1 1.2921 -2.6626 -0.7311 37 1 0.0809 -0.9360 -1.9343 38 1 1.0337 0.3689 -2.6811 39 1 2.4891 -1.3173 -3.7706 40 1 1.5363 -2.6222 -3.0238 41 1 -0.4911 -1.8151 -4.2023 42 1 0.4622 -0.5104 -4.9486 43 1 -1.4565 -1.9275 -7.7544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085289397.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:02 Heat of formation + Delta-G solvation = -14.421940 kcal Electronic energy + Delta-G solvation = -19676.798359 eV Core-core repulsion = 16948.558673 eV Total energy + Delta-G solvation = -2728.239686 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.92018 -37.76086 -35.92349 -34.36487 -33.14916 -31.16117 -29.34865 -28.22108 -27.87171 -25.71564 -24.52676 -22.53738 -21.93354 -20.56581 -19.59121 -18.46460 -17.64146 -17.10900 -16.54343 -16.26226 -15.75855 -15.67732 -14.82085 -14.71733 -14.32392 -14.30699 -13.83859 -13.71043 -13.43562 -13.13900 -12.97101 -12.83811 -12.74734 -12.56821 -12.36880 -12.32980 -12.11951 -11.97736 -11.75019 -11.48134 -11.46473 -11.41197 -11.29513 -11.07176 -10.58401 -9.47962 -9.27199 -8.22772 -6.34000 1.37958 1.38401 1.51956 2.38775 2.94862 3.10375 3.21559 3.43844 3.66888 3.83334 4.05034 4.13144 4.17616 4.19815 4.30404 4.34426 4.40935 4.51340 4.63499 4.66303 4.70828 4.75335 4.84698 4.85670 4.87868 4.96153 4.98290 5.03169 5.12499 5.15970 5.18395 5.26859 5.29803 5.47890 5.48636 5.70073 5.76204 5.81981 6.03739 6.11370 6.25645 6.38245 6.82522 7.35457 8.89425 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.031319 B = 0.004653 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.809637 B = 6016.782690 C = 6413.622180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.088 3.912 3 C -0.124 4.124 4 C -0.081 4.081 5 H 0.106 0.894 6 C 0.033 3.967 7 N -0.676 5.676 8 C 0.046 3.954 9 C -0.095 4.095 10 H 0.101 0.899 11 C 0.043 3.957 12 N -0.513 5.513 13 C 0.057 3.943 14 C -0.092 4.092 15 C 0.028 3.972 16 C -0.542 4.542 17 H 0.057 0.943 18 C 0.000 4.000 19 N -0.933 5.933 20 Si 0.965 3.035 21 H -0.263 1.263 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.083 0.917 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.344 0.656 33 H 0.040 0.960 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.032 0.968 37 H 0.037 0.963 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.048 0.952 41 H -0.011 1.011 42 H -0.009 1.009 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.068 1.647 19.634 20.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.002 4.002 3 C -0.182 4.182 4 C -0.100 4.100 5 H 0.124 0.876 6 C -0.096 4.096 7 N -0.306 5.306 8 C -0.084 4.084 9 C -0.114 4.114 10 H 0.120 0.880 11 C -0.085 4.085 12 N -0.237 5.237 13 C -0.071 4.071 14 C -0.130 4.130 15 C -0.010 4.010 16 C -0.580 4.580 17 H 0.076 0.924 18 C -0.198 4.198 19 N -0.574 5.574 20 Si 0.790 3.210 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.202 1.202 24 H 0.102 0.898 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.160 0.840 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.007 0.993 42 H 0.009 0.991 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.916 2.224 19.754 20.741 hybrid contribution -1.587 -1.187 -1.714 2.620 sum 4.330 1.038 18.040 18.581 Atomic orbital electron populations 1.22531 0.96195 1.00808 1.02888 1.21873 0.93093 0.95709 0.89511 1.21718 1.01384 0.93348 1.01730 1.22881 0.96334 0.95811 0.94990 0.87624 1.23430 0.95891 0.92406 0.97857 1.63069 1.20863 1.07295 1.39335 1.22661 0.97504 0.95693 0.92510 1.22851 1.00881 0.94785 0.92884 0.88037 1.23270 0.98922 0.90260 0.96084 1.64891 1.42678 1.10429 1.05681 1.22245 0.93789 0.99597 0.91511 1.21445 0.98907 0.97824 0.94784 1.18948 0.93789 0.95174 0.93073 1.21693 1.09566 1.24227 1.02539 0.92427 1.25983 0.94893 0.97701 1.01194 1.70108 1.16524 1.42199 1.28532 0.85392 0.78587 0.78543 0.78498 1.18662 1.20221 1.20224 0.89791 0.93175 0.93435 0.92141 0.93796 0.90475 0.88997 0.93232 0.83998 0.94193 0.89494 0.90750 0.95002 0.94508 0.91918 0.93269 0.93338 0.99270 0.99088 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.87 5.67 71.98 0.41 -3.46 16 2 C 0.09 2.07 0.86 3.61 0.00 2.08 16 3 C -0.12 -2.66 8.69 71.98 0.63 -2.03 16 4 C -0.08 -1.63 3.66 -9.01 -0.03 -1.67 16 5 H 0.11 1.95 7.82 -2.39 -0.02 1.94 16 6 C 0.03 0.61 5.56 86.60 0.48 1.09 16 7 N -0.68 -12.43 7.51 -503.33 -3.78 -16.21 16 8 C 0.05 0.89 7.06 86.39 0.61 1.50 16 9 C -0.09 -2.05 4.12 -9.01 -0.04 -2.09 16 10 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 11 C 0.04 1.18 4.30 86.60 0.37 1.55 16 12 N -0.51 -15.31 5.02 -835.34 -4.20 -19.51 16 13 C 0.06 2.03 4.14 86.30 0.36 2.39 16 14 C -0.09 -3.96 4.81 30.60 0.15 -3.82 16 15 C 0.03 1.51 4.97 29.85 0.15 1.66 16 16 C -0.54 -31.71 9.11 25.60 0.23 -31.48 16 17 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 18 C 0.00 0.00 5.46 84.65 0.46 0.46 16 19 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 20 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 21 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H 0.08 1.54 7.17 -2.39 -0.02 1.52 16 25 H 0.05 1.29 7.30 -2.39 -0.02 1.27 16 26 H 0.05 1.22 5.70 -2.39 -0.01 1.21 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.09 1.47 8.12 -2.39 -0.02 1.46 16 31 H 0.05 1.02 5.08 -2.39 -0.01 1.00 16 32 H 0.34 5.42 8.92 -89.69 -0.80 4.62 16 33 H 0.04 0.81 7.32 -2.38 -0.02 0.79 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.07 2.18 7.66 -2.39 -0.02 2.16 16 36 H 0.03 0.94 7.39 -2.39 -0.02 0.93 16 37 H 0.04 1.34 5.54 -2.39 -0.01 1.33 16 38 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 40 H 0.05 2.05 6.79 -2.39 -0.02 2.03 16 41 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 42 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 43 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -64.46 319.22 -1.72 -66.18 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.17 Total: 13.75 kcal Atomic # 6 Polarization: -37.59 SS G_CDS: 3.78 Total: -33.82 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -7.69 Total: -93.06 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -64.46 -1.72 -66.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085289397.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.758 kcal (2) G-P(sol) polarization free energy of solvation -64.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds