Wall clock time and date at job start Mon Mar 30 2020 04:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46589 * 2 1 4 4 H 1.08995 * 109.49298 * 303.40141 * 3 2 1 5 5 C 1.53055 * 109.48899 * 63.46694 * 3 2 1 6 6 N 1.46954 * 109.36488 * 178.36431 * 5 3 2 7 7 C 1.46902 * 110.99783 * 176.81205 * 6 5 3 8 8 C 1.53005 * 109.46829 * 200.56678 * 7 6 5 9 9 C 1.50692 * 115.55103 * 295.26354 * 8 7 6 10 10 H 1.08003 * 120.00125 * 143.62182 * 9 8 7 11 11 C 1.37875 * 120.00263 * 323.61710 * 9 8 7 12 12 N 1.31515 * 120.00112 * 355.34624 * 11 9 8 13 13 Si 1.86797 * 120.00125 * 175.35052 * 11 9 8 14 14 H 1.48500 * 109.47285 * 59.99880 * 13 11 9 15 15 H 1.48508 * 109.47329 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47139 * 299.99600 * 13 11 9 17 17 C 1.52998 * 117.49524 * 149.58868 * 8 7 6 18 18 C 1.53005 * 117.49580 * 80.93346 * 8 7 6 19 19 C 1.46957 * 110.88209 * 300.68149 * 6 5 3 20 20 C 1.53047 * 109.36319 * 59.31805 * 19 6 5 21 21 N 1.46953 * 109.36995 * 301.59975 * 20 19 6 22 22 C 1.46898 * 111.00668 * 183.18821 * 21 20 19 23 23 H 1.09004 * 109.46923 * 293.97404 * 1 2 3 24 24 H 1.09002 * 109.46614 * 173.97579 * 1 2 3 25 25 H 1.08996 * 109.47263 * 53.97800 * 1 2 3 26 26 H 1.09000 * 109.47215 * 119.99466 * 2 1 3 27 27 H 1.08994 * 109.47283 * 240.00383 * 2 1 3 28 28 H 1.09002 * 109.49039 * 298.33865 * 5 3 2 29 29 H 1.09007 * 109.48665 * 58.40074 * 5 3 2 30 30 H 1.08991 * 109.47284 * 320.56805 * 7 6 5 31 31 H 1.08996 * 109.46838 * 80.57515 * 7 6 5 32 32 H 0.96997 * 120.00827 * 185.00232 * 12 11 9 33 33 H 1.09003 * 117.50031 * 0.02562 * 17 8 7 34 34 H 1.09001 * 117.50009 * 145.02123 * 17 8 7 35 35 H 1.08999 * 117.49818 * 214.97598 * 18 8 7 36 36 H 1.09002 * 117.49725 * 359.97438 * 18 8 7 37 37 H 1.09000 * 109.49020 * 299.35186 * 19 6 5 38 38 H 1.09000 * 109.48725 * 179.28561 * 19 6 5 39 39 H 1.09002 * 109.48854 * 181.62711 * 20 19 6 40 40 H 1.09009 * 109.49150 * 61.56873 * 20 19 6 41 41 H 1.09001 * 109.47275 * 294.85793 * 22 21 20 42 42 H 1.09007 * 109.46905 * 54.85369 * 22 21 20 43 43 H 1.08997 * 109.47431 * 174.85533 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6279 1.9740 -0.8578 5 6 1.6024 2.1388 1.2909 6 7 2.1266 3.5116 1.3059 7 6 1.6644 4.2386 2.4958 8 6 1.7751 5.7444 2.2484 9 6 3.1746 6.2714 2.0621 10 1 3.3621 7.0689 1.3584 11 6 4.2157 5.7354 2.7900 12 7 3.9752 4.8289 3.7119 13 14 5.9677 6.2969 2.4667 14 1 6.0727 7.7576 2.7126 15 1 6.8947 5.5738 3.3740 16 1 6.3287 6.0051 1.0562 17 6 0.7665 6.6524 2.9550 18 6 0.6560 6.4128 1.4472 19 6 3.5939 3.5130 1.2247 20 6 4.0314 2.8168 -0.0661 21 7 3.5073 1.4440 -0.0811 22 6 3.9693 0.7169 -1.2710 23 1 -0.3633 0.4176 0.9391 24 1 -0.3632 -1.0220 -0.1079 25 1 -0.3633 0.6043 -0.8311 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 0.5138 2.1646 1.3392 29 1 1.9920 1.5915 2.1493 30 1 0.6256 3.9792 2.6994 31 1 2.2817 3.9647 3.3514 32 1 4.6967 4.5049 4.2735 33 1 0.0244 6.1770 3.5964 34 1 1.1151 7.6311 3.2848 35 1 0.9320 7.2339 0.7856 36 1 -0.1588 5.7796 1.0960 37 1 4.0061 2.9812 2.0824 38 1 3.9572 4.5407 1.2248 39 1 5.1200 2.7910 -0.1144 40 1 3.6419 3.3641 -0.9246 41 1 3.5501 1.1790 -2.1648 42 1 5.0577 0.7537 -1.3194 43 1 3.6432 -0.3214 -1.2118 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259537.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:40 Heat of formation + Delta-G solvation = 46.393554 kcal Electronic energy + Delta-G solvation = -20399.261209 eV Core-core repulsion = 17673.658680 eV Total energy + Delta-G solvation = -2725.602529 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.02047 -36.81251 -34.05590 -33.46254 -32.30482 -28.83722 -27.96571 -25.72280 -24.62332 -23.93736 -22.26868 -21.02786 -20.50665 -18.95894 -18.86114 -16.12093 -15.46533 -15.01516 -14.68462 -14.65414 -14.03981 -13.93349 -13.46052 -13.14498 -13.08989 -12.81011 -12.55695 -12.03135 -11.70095 -11.57825 -11.44426 -11.35455 -11.00332 -10.88015 -10.60212 -10.52419 -10.34020 -10.29057 -10.12254 -9.83783 -9.74581 -9.25698 -8.83332 -8.57776 -7.94179 -7.88546 -7.07675 -5.92549 -4.06449 3.24619 3.31553 3.33590 4.30607 4.32454 4.81479 5.08034 5.12827 5.32543 5.41685 5.54803 5.64253 5.67509 5.76404 5.79997 5.87631 5.99718 6.08173 6.12725 6.18356 6.19672 6.26932 6.32046 6.40702 6.43094 6.55603 6.63136 6.77362 6.83966 6.86491 7.04015 7.10275 7.34234 7.41954 7.46349 7.53120 7.58657 7.67251 8.03223 8.38179 8.43029 8.52635 8.88474 9.45787 10.92623 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020657 B = 0.008572 C = 0.006705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.167202 B = 3265.618697 C = 4174.690372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C 0.091 3.909 4 H 0.042 0.958 5 C 0.063 3.937 6 N -0.524 5.524 7 C 0.082 3.918 8 C 0.064 3.936 9 C -0.474 4.474 10 H 0.059 0.941 11 C 0.071 3.929 12 N -0.879 5.879 13 Si 0.884 3.116 14 H -0.276 1.276 15 H -0.284 1.284 16 H -0.272 1.272 17 C -0.208 4.208 18 C -0.201 4.201 19 C 0.049 3.951 20 C 0.053 3.947 21 N -0.541 5.541 22 C 0.023 3.977 23 H 0.058 0.942 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.028 0.972 30 H 0.022 0.978 31 H 0.104 0.896 32 H 0.263 0.737 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.036 0.964 38 H 0.130 0.870 39 H 0.064 0.936 40 H 0.033 0.967 41 H 0.019 0.981 42 H 0.061 0.939 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.513 -7.947 -5.979 10.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.018 4.018 4 H 0.060 0.940 5 C -0.066 4.066 6 N -0.248 5.248 7 C -0.045 4.045 8 C 0.063 3.937 9 C -0.512 4.512 10 H 0.077 0.923 11 C -0.130 4.130 12 N -0.518 5.518 13 Si 0.710 3.290 14 H -0.201 1.201 15 H -0.210 1.210 16 H -0.197 1.197 17 C -0.246 4.246 18 C -0.238 4.238 19 C -0.078 4.078 20 C -0.075 4.075 21 N -0.266 5.266 22 C -0.125 4.125 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.040 0.960 31 H 0.122 0.878 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.147 0.853 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.038 0.962 42 H 0.080 0.920 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.378 -8.107 -5.868 10.286 hybrid contribution 0.820 0.309 -0.186 0.895 sum -1.559 -7.798 -6.053 9.994 Atomic orbital electron populations 1.21778 0.95762 1.01052 1.02172 1.21617 0.95502 0.96412 1.02086 1.21680 0.87133 0.94779 0.98172 0.93955 1.22134 0.98577 0.90744 0.95194 1.62008 1.09936 1.11001 1.41843 1.21972 0.96548 0.92729 0.93239 1.18874 0.89340 0.89821 0.95686 1.20545 0.90240 1.17801 1.22623 0.92299 1.24903 0.98792 0.94290 0.95045 1.69707 1.32207 1.29390 1.20452 0.86803 0.84495 0.79024 0.78629 1.20143 1.20964 1.19731 1.22962 1.05570 1.02559 0.93545 1.22750 1.03981 1.03894 0.93216 1.22846 0.87806 1.03932 0.93214 1.22400 0.98453 0.86888 0.99754 1.62205 1.09357 1.16510 1.38515 1.22379 1.00305 0.98712 0.91143 0.92321 0.93063 0.92846 0.91469 0.92164 0.91741 0.95340 0.95983 0.87823 0.92646 0.91997 0.90695 0.91199 0.91583 0.94524 0.85309 0.91729 0.94907 0.96247 0.92022 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.48 37.16 0.35 -1.42 16 2 C -0.12 -1.58 5.19 -26.72 -0.14 -1.72 16 3 C 0.09 1.52 2.05 -67.65 -0.14 1.38 16 4 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 5 C 0.06 1.19 4.52 -3.77 -0.02 1.17 16 6 N -0.52 -11.60 4.63 -234.46 -1.09 -12.69 16 7 C 0.08 1.95 4.73 -3.82 -0.02 1.93 16 8 C 0.06 1.57 2.03 -155.66 -0.32 1.25 16 9 C -0.47 -12.44 7.38 -34.44 -0.25 -12.69 16 10 H 0.06 1.56 7.82 -52.48 -0.41 1.15 16 11 C 0.07 1.82 3.08 -17.82 -0.05 1.77 16 12 N -0.88 -23.04 9.08 55.43 0.50 -22.53 16 13 Si 0.88 20.11 29.12 -169.99 -4.95 15.16 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 C -0.21 -4.77 9.93 -26.70 -0.27 -5.04 16 18 C -0.20 -4.52 9.96 -26.69 -0.27 -4.79 16 19 C 0.05 1.12 4.10 -3.77 -0.02 1.10 16 20 C 0.05 1.03 5.62 -3.77 -0.02 1.01 16 21 N -0.54 -9.42 4.78 -234.72 -1.12 -10.55 16 22 C 0.02 0.32 9.10 60.06 0.55 0.87 16 23 H 0.06 0.72 6.87 -51.93 -0.36 0.36 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.74 6.20 -51.93 -0.32 0.42 16 28 H 0.06 1.15 6.60 -51.93 -0.34 0.81 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.02 0.50 7.78 -51.93 -0.40 0.09 16 31 H 0.10 2.73 5.20 -51.93 -0.27 2.46 16 32 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 35 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.04 0.90 7.45 -51.93 -0.39 0.52 16 38 H 0.13 3.22 3.22 -51.93 -0.17 3.05 16 39 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 40 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 41 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.06 0.81 8.11 -51.92 -0.42 0.39 16 43 H 0.06 0.81 6.25 -51.93 -0.32 0.48 16 LS Contribution 317.62 15.07 4.79 4.79 Total: -1.00 -26.01 317.62 -10.09 -36.10 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -7.61 Total: 4.89 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -0.61 Total: -15.17 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: -1.71 Total: -45.77 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.95 Total: 15.16 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -26.01 -10.09 -36.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259537.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.490 kcal (2) G-P(sol) polarization free energy of solvation -26.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds