Wall clock time and date at job start Mon Mar 30 2020 04:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47030 * 2 1 4 4 C 1.53002 * 109.47030 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.49336 * 304.93435 * 4 3 2 6 6 C 1.53044 * 109.49610 * 184.84008 * 4 3 2 7 7 C 1.53041 * 109.53238 * 178.68227 * 6 4 3 8 8 H 1.08993 * 109.50083 * 301.41105 * 7 6 4 9 9 N 1.46902 * 109.51776 * 181.33117 * 7 6 4 10 10 C 1.46905 * 110.99614 * 155.14811 * 9 7 6 11 11 C 1.53003 * 117.49514 * 223.62033 * 10 9 7 12 12 C 1.53000 * 59.99940 * 252.51170 * 11 10 9 13 13 C 1.53194 * 109.31430 * 61.36726 * 7 6 4 14 14 N 1.46925 * 108.77403 * 305.36311 * 13 7 6 15 15 C 1.36939 * 120.62765 * 233.59302 * 14 13 7 16 16 H 1.08003 * 120.00099 * 152.30730 * 15 14 13 17 17 C 1.38816 * 119.99857 * 332.29744 * 15 14 13 18 18 N 1.31619 * 119.99925 * 342.60804 * 17 15 14 19 19 Si 1.86799 * 119.99971 * 162.60672 * 17 15 14 20 20 H 1.48499 * 109.47252 * 94.34794 * 19 17 15 21 21 H 1.48495 * 109.47211 * 214.35272 * 19 17 15 22 22 H 1.48506 * 109.47002 * 334.35074 * 19 17 15 23 23 C 1.46923 * 118.74125 * 53.60498 * 14 13 7 24 24 H 1.09010 * 109.47249 * 299.99848 * 1 2 3 25 25 H 1.09001 * 109.47383 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47258 * 59.99479 * 1 2 3 27 27 H 1.08998 * 109.46737 * 119.99971 * 2 1 3 28 28 H 1.08996 * 109.46772 * 239.99832 * 2 1 3 29 29 H 1.08993 * 109.47182 * 300.00514 * 3 2 1 30 30 H 1.09010 * 109.46981 * 59.99987 * 3 2 1 31 31 H 1.08994 * 109.45454 * 298.70053 * 6 4 3 32 32 H 1.08997 * 109.46147 * 58.66288 * 6 4 3 33 33 H 1.00902 * 110.99942 * 279.09791 * 9 7 6 34 34 H 1.08994 * 115.55179 * 9.32859 * 10 9 7 35 35 H 1.08990 * 117.50005 * 0.02562 * 11 10 9 36 36 H 1.08995 * 117.49547 * 145.02574 * 11 10 9 37 37 H 1.09004 * 117.50085 * 252.50948 * 12 11 10 38 38 H 1.08999 * 117.49871 * 107.49152 * 12 11 10 39 39 H 1.08994 * 109.58561 * 185.57100 * 13 7 6 40 40 H 1.08995 * 109.58952 * 65.14555 * 13 7 6 41 41 H 0.97002 * 119.99945 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.58647 * 186.61154 * 23 14 13 43 43 H 1.08998 * 109.58330 * 66.17856 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9341 0.8540 0.8415 6 6 4.0808 2.8800 0.1211 7 6 5.6109 2.8783 0.1536 8 1 5.9563 2.2766 0.9942 9 7 6.1002 4.2554 0.3025 10 6 7.4364 4.2762 0.9125 11 6 7.6975 5.3137 2.0064 12 6 8.3267 5.4863 0.6224 13 6 6.1448 2.2845 -1.1538 14 7 5.5440 0.9583 -1.3509 15 6 6.3329 -0.1395 -1.5691 16 1 5.9863 -1.1201 -1.2779 17 6 7.5780 0.0079 -2.1649 18 7 7.8660 1.1104 -2.8236 19 14 8.8448 -1.3584 -2.0316 20 1 8.7551 -2.2350 -3.2269 21 1 10.2045 -0.7668 -1.9524 22 1 8.5818 -2.1598 -0.8092 23 6 4.0807 0.8324 -1.3097 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 3.7364 3.4613 -0.7341 32 1 3.6986 3.3247 1.0399 33 1 6.1000 4.7371 -0.5842 34 1 7.9228 3.3059 1.0123 35 1 6.8777 5.9804 2.2736 36 1 8.3557 5.0260 2.8260 37 1 9.3989 5.3121 0.5317 38 1 7.9209 6.2669 -0.0211 39 1 7.2291 2.1896 -1.0960 40 1 5.8767 2.9345 -1.9867 41 1 8.7359 1.2133 -3.2402 42 1 3.8032 -0.2207 -1.3547 43 1 3.6444 1.3640 -2.1553 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108035776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:09 Heat of formation + Delta-G solvation = 24.288515 kcal Electronic energy + Delta-G solvation = -19526.983069 eV Core-core repulsion = 16800.421993 eV Total energy + Delta-G solvation = -2726.561075 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.54364 -36.99838 -34.87684 -33.37732 -31.79794 -30.22076 -27.74211 -25.61167 -25.28358 -22.17268 -21.97108 -21.57705 -20.78265 -19.96092 -19.00429 -16.74113 -15.64506 -15.37664 -14.92508 -14.52660 -14.01895 -13.74732 -13.41208 -13.30964 -13.17142 -12.73406 -12.35278 -12.09890 -12.01514 -11.75128 -11.26622 -11.11935 -11.02724 -10.94369 -10.76396 -10.57472 -10.44202 -10.29688 -10.18171 -10.08371 -10.03606 -9.83321 -9.50366 -9.40835 -8.48790 -7.83724 -6.64653 -5.79747 -3.21992 3.35041 3.42633 3.45129 4.14747 4.41745 4.50996 5.13557 5.22063 5.24890 5.29527 5.34161 5.35386 5.56869 5.59113 5.63228 5.75887 5.77936 5.88133 5.93274 6.03104 6.05928 6.10310 6.17097 6.20241 6.23809 6.36456 6.39259 6.41758 6.50053 6.54865 6.62001 6.70234 6.84061 6.93906 7.07510 7.24961 7.51028 7.70946 7.77154 7.87280 8.43378 9.19657 9.83964 10.40662 11.27655 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.011516 B = 0.008946 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.836374 B = 3129.051510 C = 5218.716371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.108 4.108 4 C -0.105 4.105 5 H 0.065 0.935 6 C -0.088 4.088 7 C 0.061 3.939 8 H 0.070 0.930 9 N -0.655 5.655 10 C 0.030 3.970 11 C -0.177 4.177 12 C -0.196 4.196 13 C 0.152 3.848 14 N -0.590 5.590 15 C -0.251 4.251 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.902 5.902 19 Si 0.899 3.101 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.152 3.848 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.339 0.661 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.015 0.985 41 H 0.253 0.747 42 H 0.054 0.946 43 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.861 4.580 6.804 10.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.146 4.146 4 C -0.125 4.125 5 H 0.083 0.917 6 C -0.127 4.127 7 C -0.050 4.050 8 H 0.088 0.912 9 N -0.284 5.284 10 C -0.081 4.081 11 C -0.216 4.216 12 C -0.234 4.234 13 C 0.024 3.976 14 N -0.313 5.313 15 C -0.381 4.381 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.547 5.547 19 Si 0.729 3.271 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.204 1.204 23 C 0.026 3.974 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.158 0.842 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.033 0.967 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -7.039 4.703 7.291 11.173 hybrid contribution 1.338 -0.909 -0.777 1.795 sum -5.700 3.794 6.514 9.451 Atomic orbital electron populations 1.21781 0.96618 1.01028 1.01353 1.21572 0.94927 0.97572 1.02312 1.21575 0.95729 0.96140 1.01169 1.21683 0.93539 0.96619 1.00694 0.91674 1.21366 0.94937 0.95817 1.00545 1.22399 0.94879 0.87024 1.00676 0.91208 1.60431 1.21422 1.17172 1.29414 1.22357 0.90387 0.93867 1.01495 1.23091 1.02726 1.03786 0.91948 1.23177 0.98994 1.01428 0.99789 1.21440 0.99536 0.85669 0.90932 1.43982 0.99576 1.04838 1.82855 1.19198 0.98224 0.87684 1.32958 0.91667 1.25020 0.99927 0.97354 0.97402 1.70037 1.21897 1.27214 1.35560 0.86332 0.81241 0.81610 0.77955 1.21422 1.21588 1.20410 1.20998 0.85416 0.98067 0.92927 0.93198 0.93228 0.92975 0.92309 0.91530 0.92402 0.92773 0.92980 0.93066 0.84230 0.88243 0.88807 0.89461 0.89140 0.88896 0.89635 0.96678 0.93731 0.92799 0.96662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.13 -1.67 5.69 -26.73 -0.15 -1.82 16 3 C -0.11 -1.54 4.69 -26.73 -0.13 -1.66 16 4 C -0.10 -1.82 2.34 -90.50 -0.21 -2.03 16 5 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 6 C -0.09 -1.55 4.78 -26.69 -0.13 -1.68 16 7 C 0.06 1.18 2.51 -67.59 -0.17 1.01 16 8 H 0.07 1.45 7.74 -51.93 -0.40 1.05 16 9 N -0.65 -11.24 6.50 -99.61 -0.65 -11.89 16 10 C 0.03 0.49 6.03 -67.71 -0.41 0.08 16 11 C -0.18 -2.42 10.46 -26.73 -0.28 -2.70 16 12 C -0.20 -2.74 10.33 -26.73 -0.28 -3.01 16 13 C 0.15 3.57 4.59 -3.71 -0.02 3.55 16 14 N -0.59 -14.74 2.99 -172.32 -0.52 -15.25 16 15 C -0.25 -6.89 9.58 -15.06 -0.14 -7.03 16 16 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 17 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 18 N -0.90 -26.13 11.19 55.49 0.62 -25.50 16 19 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.15 3.18 5.41 -3.71 -0.02 3.16 16 24 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.94 6.70 -51.93 -0.35 0.59 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.72 8.14 -51.92 -0.42 0.29 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.34 5.76 8.37 -39.29 -0.33 5.43 16 34 H 0.10 1.79 7.77 -51.93 -0.40 1.39 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.09 2.27 6.04 -51.93 -0.31 1.96 16 40 H 0.02 0.38 8.04 -51.93 -0.42 -0.04 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.05 1.11 6.65 -51.93 -0.35 0.77 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 334.31 15.07 5.04 5.04 Total: -1.00 -28.26 334.31 -10.21 -38.47 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -8.03 Total: 5.91 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -1.65 Total: -13.46 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.54 Total: -52.64 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.26 -10.21 -38.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108035776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.759 kcal (2) G-P(sol) polarization free energy of solvation -28.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds