Wall clock time and date at job start Mon Mar 30 2020 04:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47030 * 2 1 4 4 C 1.53002 * 109.47030 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.49336 * 304.93435 * 4 3 2 6 6 C 1.53044 * 109.49610 * 184.84008 * 4 3 2 7 7 C 1.53041 * 109.53238 * 178.68227 * 6 4 3 8 8 H 1.08993 * 109.50083 * 301.41105 * 7 6 4 9 9 N 1.46902 * 109.51776 * 181.33117 * 7 6 4 10 10 C 1.46905 * 110.99614 * 155.14811 * 9 7 6 11 11 C 1.53003 * 117.49514 * 223.62033 * 10 9 7 12 12 C 1.53000 * 59.99940 * 252.51170 * 11 10 9 13 13 C 1.53194 * 109.31430 * 61.36726 * 7 6 4 14 14 N 1.46925 * 108.77403 * 305.36311 * 13 7 6 15 15 C 1.36939 * 120.62765 * 233.59302 * 14 13 7 16 16 H 1.08003 * 120.00099 * 152.30730 * 15 14 13 17 17 C 1.38816 * 119.99857 * 332.29744 * 15 14 13 18 18 N 1.31619 * 119.99925 * 342.60804 * 17 15 14 19 19 Si 1.86799 * 119.99971 * 162.60672 * 17 15 14 20 20 H 1.48499 * 109.47252 * 94.34794 * 19 17 15 21 21 H 1.48495 * 109.47211 * 214.35272 * 19 17 15 22 22 H 1.48506 * 109.47002 * 334.35074 * 19 17 15 23 23 C 1.46923 * 118.74125 * 53.60498 * 14 13 7 24 24 H 1.09010 * 109.47249 * 299.99848 * 1 2 3 25 25 H 1.09001 * 109.47383 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47258 * 59.99479 * 1 2 3 27 27 H 1.08998 * 109.46737 * 119.99971 * 2 1 3 28 28 H 1.08996 * 109.46772 * 239.99832 * 2 1 3 29 29 H 1.08993 * 109.47182 * 300.00514 * 3 2 1 30 30 H 1.09010 * 109.46981 * 59.99987 * 3 2 1 31 31 H 1.08994 * 109.45454 * 298.70053 * 6 4 3 32 32 H 1.08997 * 109.46147 * 58.66288 * 6 4 3 33 33 H 1.00902 * 110.99942 * 279.09791 * 9 7 6 34 34 H 1.08994 * 115.55179 * 9.32859 * 10 9 7 35 35 H 1.08990 * 117.50005 * 0.02562 * 11 10 9 36 36 H 1.08995 * 117.49547 * 145.02574 * 11 10 9 37 37 H 1.09004 * 117.50085 * 252.50948 * 12 11 10 38 38 H 1.08999 * 117.49871 * 107.49152 * 12 11 10 39 39 H 1.08994 * 109.58561 * 185.57100 * 13 7 6 40 40 H 1.08995 * 109.58952 * 65.14555 * 13 7 6 41 41 H 0.97002 * 119.99945 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.58647 * 186.61154 * 23 14 13 43 43 H 1.08998 * 109.58330 * 66.17856 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9341 0.8540 0.8415 6 6 4.0808 2.8800 0.1211 7 6 5.6109 2.8783 0.1536 8 1 5.9563 2.2766 0.9942 9 7 6.1002 4.2554 0.3025 10 6 7.4364 4.2762 0.9125 11 6 7.6975 5.3137 2.0064 12 6 8.3267 5.4863 0.6224 13 6 6.1448 2.2845 -1.1538 14 7 5.5440 0.9583 -1.3509 15 6 6.3329 -0.1395 -1.5691 16 1 5.9863 -1.1201 -1.2779 17 6 7.5780 0.0079 -2.1649 18 7 7.8660 1.1104 -2.8236 19 14 8.8448 -1.3584 -2.0316 20 1 8.7551 -2.2350 -3.2269 21 1 10.2045 -0.7668 -1.9524 22 1 8.5818 -2.1598 -0.8092 23 6 4.0807 0.8324 -1.3097 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 3.7364 3.4613 -0.7341 32 1 3.6986 3.3247 1.0399 33 1 6.1000 4.7371 -0.5842 34 1 7.9228 3.3059 1.0123 35 1 6.8777 5.9804 2.2736 36 1 8.3557 5.0260 2.8260 37 1 9.3989 5.3121 0.5317 38 1 7.9209 6.2669 -0.0211 39 1 7.2291 2.1896 -1.0960 40 1 5.8767 2.9345 -1.9867 41 1 8.7359 1.2133 -3.2402 42 1 3.8032 -0.2207 -1.3547 43 1 3.6444 1.3640 -2.1553 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108035776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:09 Heat of formation + Delta-G solvation = 8.510571 kcal Electronic energy + Delta-G solvation = -19527.667251 eV Core-core repulsion = 16800.421993 eV Total energy + Delta-G solvation = -2727.245258 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.10576 -38.30180 -36.32475 -35.05203 -33.33098 -31.94516 -29.22912 -27.28032 -26.95666 -23.55693 -23.29860 -23.11996 -22.05647 -21.34155 -20.56613 -18.74169 -17.12530 -16.95253 -16.23114 -16.15361 -15.64408 -15.14215 -14.93009 -14.87575 -14.57045 -14.20700 -13.94904 -13.48625 -13.34660 -12.99891 -12.95391 -12.77094 -12.41300 -12.33546 -12.22579 -12.16326 -12.05845 -11.84845 -11.73010 -11.54560 -11.38023 -11.28981 -11.07304 -10.86347 -10.57153 -9.31136 -8.66026 -7.89970 -5.36227 1.41276 1.42916 1.52948 2.46642 2.92879 3.09775 3.23564 3.73873 3.95151 4.03850 4.05890 4.11547 4.16770 4.24020 4.37099 4.42731 4.50362 4.53703 4.66566 4.77053 4.79289 4.87517 4.93578 4.96815 5.00997 5.05449 5.06384 5.12111 5.23631 5.30130 5.30903 5.35220 5.38073 5.50709 5.53625 5.57006 5.63172 5.69726 6.15416 6.35746 6.42474 7.10636 7.82682 8.34235 9.14132 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.011516 B = 0.008946 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.836374 B = 3129.051510 C = 5218.716371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C -0.099 4.099 4 C -0.093 4.093 5 H 0.056 0.944 6 C -0.081 4.081 7 C 0.077 3.923 8 H 0.054 0.946 9 N -0.642 5.642 10 C -0.006 4.006 11 C -0.152 4.152 12 C -0.186 4.186 13 C 0.165 3.835 14 N -0.610 5.610 15 C -0.264 4.264 16 H 0.065 0.935 17 C -0.050 4.050 18 N -0.933 5.933 19 Si 0.963 3.037 20 H -0.284 1.284 21 H -0.292 1.292 22 H -0.270 1.270 23 C 0.151 3.849 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.338 0.662 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.050 0.950 40 H -0.009 1.009 41 H 0.249 0.751 42 H 0.052 0.948 43 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.938 5.107 8.314 12.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C -0.137 4.137 4 C -0.114 4.114 5 H 0.075 0.925 6 C -0.119 4.119 7 C -0.034 4.034 8 H 0.073 0.927 9 N -0.271 5.271 10 C -0.117 4.117 11 C -0.190 4.190 12 C -0.224 4.224 13 C 0.038 3.962 14 N -0.333 5.333 15 C -0.394 4.394 16 H 0.083 0.917 17 C -0.245 4.245 18 N -0.579 5.579 19 Si 0.790 3.210 20 H -0.211 1.211 21 H -0.218 1.218 22 H -0.195 1.195 23 C 0.026 3.974 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.157 0.843 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.068 0.932 40 H 0.009 0.991 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -8.140 5.233 8.821 13.094 hybrid contribution 1.678 -1.074 -1.274 2.365 sum -6.463 4.159 7.547 10.771 Atomic orbital electron populations 1.21737 0.94620 1.01882 1.02089 1.21557 0.96687 0.96644 1.01543 1.21513 0.92803 0.97155 1.02266 1.21541 0.95955 0.96021 0.97888 0.92542 1.21324 0.93104 0.95953 1.01553 1.22102 0.96299 0.87790 0.97221 0.92747 1.60548 1.22110 1.15270 1.29179 1.22381 0.90596 0.93972 1.04703 1.23139 1.02632 1.01422 0.91806 1.23256 0.99013 0.99788 1.00392 1.21228 0.97535 0.85118 0.92318 1.44284 1.01224 1.04675 1.83089 1.19517 0.98951 0.88517 1.32409 0.91707 1.25758 1.01652 0.99632 0.97458 1.70189 1.21967 1.29065 1.36655 0.85336 0.78519 0.79010 0.78091 1.21095 1.21799 1.19491 1.21127 0.83245 0.98325 0.94720 0.92017 0.92406 0.92667 0.92375 0.93100 0.92107 0.90750 0.92944 0.90910 0.84320 0.90808 0.87894 0.87880 0.88515 0.88006 0.93161 0.99106 0.94202 0.92997 0.97388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.91 71.98 0.71 -2.13 16 2 C -0.13 -3.13 5.69 30.59 0.17 -2.95 16 3 C -0.10 -2.60 4.69 30.59 0.14 -2.46 16 4 C -0.09 -3.17 2.34 -10.72 -0.03 -3.19 16 5 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 6 C -0.08 -2.74 4.78 30.62 0.15 -2.60 16 7 C 0.08 3.02 2.51 44.99 0.11 3.13 16 8 H 0.05 2.31 7.74 -2.39 -0.02 2.29 16 9 N -0.64 -21.87 6.50 -469.06 -3.05 -24.92 16 10 C -0.01 -0.19 6.03 44.92 0.27 0.08 16 11 C -0.15 -3.82 10.46 30.60 0.32 -3.50 16 12 C -0.19 -4.97 10.33 30.59 0.32 -4.66 16 13 C 0.17 8.11 4.59 86.36 0.40 8.50 16 14 N -0.61 -31.35 2.99 -699.11 -2.09 -33.44 16 15 C -0.26 -14.84 9.58 84.03 0.81 -14.03 16 16 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 17 C -0.05 -2.82 4.91 84.86 0.42 -2.40 16 18 N -0.93 -55.87 11.19 21.65 0.24 -55.63 16 19 Si 0.96 45.54 29.59 68.60 2.03 47.57 16 20 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 C 0.15 6.40 5.41 86.36 0.47 6.86 16 24 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.05 1.40 6.70 -2.39 -0.02 1.38 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.34 11.51 8.37 -89.69 -0.75 10.76 16 34 H 0.07 2.77 7.77 -2.39 -0.02 2.76 16 35 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 38 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.05 2.81 6.04 -2.39 -0.01 2.79 16 40 H -0.01 -0.48 8.04 -2.39 -0.02 -0.50 16 41 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 42 H 0.05 2.18 6.65 -2.39 -0.02 2.16 16 43 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -61.97 334.31 1.59 -60.38 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.20 Total: 25.39 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: 4.26 Total: -19.35 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -4.90 Total: -113.99 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -61.97 1.59 -60.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108035776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.893 kcal (2) G-P(sol) polarization free energy of solvation -61.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds