Wall clock time and date at job start Mon Mar 30 2020 04:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46844 * 2 1 4 4 C 1.52996 * 109.47114 * 120.00605 * 2 1 3 5 5 H 1.08996 * 109.49765 * 300.06102 * 4 2 1 6 6 C 1.53043 * 109.49568 * 179.97438 * 4 2 1 7 7 C 1.53039 * 109.53843 * 178.68034 * 6 4 2 8 8 H 1.08997 * 109.50192 * 301.41302 * 7 6 4 9 9 N 1.46904 * 109.49599 * 181.31625 * 7 6 4 10 10 C 1.46896 * 110.99968 * 155.00118 * 9 7 6 11 11 C 1.52997 * 117.50289 * 223.74422 * 10 9 7 12 12 C 1.52998 * 117.50097 * 155.08339 * 10 9 7 13 13 C 1.53196 * 109.31052 * 61.36620 * 7 6 4 14 14 N 1.46921 * 108.77369 * 305.36063 * 13 7 6 15 15 C 1.36935 * 120.63301 * 233.58714 * 14 13 7 16 16 H 1.07999 * 120.00250 * 151.85516 * 15 14 13 17 17 C 1.38819 * 119.99876 * 331.85065 * 15 14 13 18 18 N 1.31616 * 119.99988 * 343.06643 * 17 15 14 19 19 Si 1.86799 * 119.99793 * 163.06677 * 17 15 14 20 20 H 1.48501 * 109.47015 * 90.00111 * 19 17 15 21 21 H 1.48503 * 109.47008 * 209.99917 * 19 17 15 22 22 H 1.48495 * 109.47344 * 330.00172 * 19 17 15 23 23 C 1.46927 * 118.73881 * 53.61311 * 14 13 7 24 24 H 1.08999 * 109.46867 * 299.99391 * 1 2 3 25 25 H 1.08997 * 109.47485 * 59.99808 * 1 2 3 26 26 H 1.09002 * 109.47252 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46651 * 240.00226 * 2 1 3 28 28 H 1.09004 * 109.46705 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47236 * 300.00344 * 3 2 1 30 30 H 1.08999 * 109.46891 * 60.00624 * 3 2 1 31 31 H 1.08995 * 109.45830 * 298.70192 * 6 4 2 32 32 H 1.09004 * 109.46195 * 58.66092 * 6 4 2 33 33 H 1.00901 * 111.00085 * 278.95156 * 9 7 6 34 34 H 1.09006 * 115.54751 * 9.41866 * 10 9 7 35 35 H 1.09007 * 117.49526 * 0.02562 * 11 10 9 36 36 H 1.08998 * 117.49908 * 145.01488 * 11 10 9 37 37 H 1.08999 * 117.50260 * 214.97842 * 12 10 9 38 38 H 1.09009 * 117.49743 * 359.97438 * 12 10 9 39 39 H 1.09004 * 109.58559 * 185.57697 * 13 7 6 40 40 H 1.08996 * 109.70552 * 65.22170 * 13 7 6 41 41 H 0.96999 * 120.00068 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.58895 * 186.59807 * 23 14 13 43 43 H 1.09002 * 109.70458 * 66.24610 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6760 -0.2086 2.1394 6 6 3.5704 -0.7222 1.2494 7 6 4.0817 -1.4147 2.5148 8 1 3.6988 -0.8957 3.3935 9 7 5.5504 -1.3871 2.5294 10 6 6.0649 -1.4759 3.9025 11 6 7.2122 -0.5404 4.2889 12 6 7.4760 -2.0355 4.0934 13 6 3.5973 -2.8680 2.5279 14 7 2.1354 -2.8805 2.3819 15 6 1.3497 -3.5452 3.2852 16 1 0.3388 -3.2127 3.4692 17 6 1.8526 -4.6466 3.9643 18 7 2.9319 -5.2561 3.5218 19 14 0.9973 -5.2634 5.5063 20 1 -0.0268 -6.2724 5.1343 21 1 1.9971 -5.8837 6.4123 22 1 0.3418 -4.1246 6.1980 23 6 1.5325 -2.1667 1.2480 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.9334 -1.2564 0.3713 32 1 3.9342 0.3050 1.2254 33 1 5.9316 -2.1218 1.9523 34 1 5.3241 -1.7067 4.6681 35 1 7.5850 0.1412 3.5243 36 1 7.2264 -0.1560 5.3088 37 1 7.6638 -2.6341 4.9848 38 1 8.0225 -2.3382 3.2001 39 1 3.8743 -3.3369 3.4722 40 1 4.0518 -3.4143 1.7015 41 1 3.2830 -6.0259 3.9962 42 1 0.4471 -2.1730 1.3476 43 1 1.8166 -2.6530 0.3147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108035796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:20 Heat of formation + Delta-G solvation = 12.552872 kcal Electronic energy + Delta-G solvation = -19796.287324 eV Core-core repulsion = 17069.217353 eV Total energy + Delta-G solvation = -2727.069971 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.24080 -38.39377 -36.58310 -34.98112 -33.15061 -30.91150 -29.21475 -28.07336 -26.86232 -24.23857 -23.26654 -23.12228 -22.05184 -21.15215 -20.38756 -18.72895 -17.13347 -16.96244 -16.24052 -15.93854 -15.51888 -15.20929 -14.76407 -14.71983 -14.59523 -14.37652 -13.92407 -13.49536 -13.18948 -13.02976 -12.81652 -12.77456 -12.55245 -12.34017 -12.29070 -12.17313 -12.04936 -11.87625 -11.73959 -11.55193 -11.36313 -11.32205 -10.96774 -10.85672 -10.57174 -9.30705 -8.64931 -7.89576 -5.36521 1.41441 1.42864 1.52626 2.46578 2.93063 3.10059 3.23891 3.71972 3.96136 4.03656 4.07499 4.11229 4.12956 4.23548 4.38782 4.40851 4.55241 4.68822 4.70873 4.76333 4.79334 4.84668 4.90958 4.94651 5.06122 5.08164 5.10525 5.16203 5.25326 5.26392 5.30997 5.32627 5.38061 5.47465 5.56021 5.61262 5.66264 5.72127 6.15931 6.36164 6.42718 7.10924 7.82840 8.34657 9.14254 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.011781 B = 0.009875 C = 0.005766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.172228 B = 2834.633211 C = 4855.296191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.086 4.086 5 H 0.054 0.946 6 C -0.081 4.081 7 C 0.078 3.922 8 H 0.053 0.947 9 N -0.642 5.642 10 C -0.005 4.005 11 C -0.152 4.152 12 C -0.186 4.186 13 C 0.166 3.834 14 N -0.609 5.609 15 C -0.264 4.264 16 H 0.065 0.935 17 C -0.049 4.049 18 N -0.932 5.932 19 Si 0.963 3.037 20 H -0.283 1.283 21 H -0.292 1.292 22 H -0.271 1.271 23 C 0.150 3.850 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.338 0.662 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.049 0.951 40 H -0.009 1.009 41 H 0.249 0.751 42 H 0.052 0.948 43 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.560 11.726 -3.882 12.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 C -0.198 4.198 4 C -0.106 4.106 5 H 0.073 0.927 6 C -0.119 4.119 7 C -0.034 4.034 8 H 0.072 0.928 9 N -0.271 5.271 10 C -0.116 4.116 11 C -0.190 4.190 12 C -0.225 4.225 13 C 0.038 3.962 14 N -0.332 5.332 15 C -0.394 4.394 16 H 0.082 0.918 17 C -0.245 4.245 18 N -0.578 5.578 19 Si 0.791 3.209 20 H -0.209 1.209 21 H -0.218 1.218 22 H -0.196 1.196 23 C 0.024 3.976 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.157 0.843 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.068 0.932 40 H 0.009 0.991 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 3.652 12.275 -3.847 13.372 hybrid contribution -0.578 -2.039 1.117 2.395 sum 3.074 10.237 -2.730 11.031 Atomic orbital electron populations 1.21843 0.94947 1.01427 1.01968 1.21049 0.96016 0.96610 0.96655 1.21826 1.01210 0.94816 1.01924 1.21542 0.95237 0.95720 0.98127 0.92704 1.21376 0.94408 1.00319 0.95838 1.22101 0.86461 0.96285 0.98520 0.92819 1.60545 1.06583 1.51219 1.08726 1.22377 0.91256 1.06598 0.91386 1.23153 1.00613 0.92556 1.02688 1.23265 0.97934 0.97468 1.03789 1.21223 0.83605 0.92890 0.98459 1.44266 1.02139 1.59526 1.27285 1.19499 0.97572 1.06433 1.15927 0.91753 1.25774 0.99349 0.96246 1.03122 1.70182 1.26065 1.21418 1.40129 0.85345 0.77595 0.78147 0.79829 1.20948 1.21833 1.19606 1.21139 0.96395 0.91351 0.88668 0.93000 0.91260 0.93593 0.91509 0.92377 0.91510 0.92987 0.93156 0.90506 0.84337 0.90852 0.87881 0.87885 0.88524 0.88005 0.93243 0.99142 0.94217 0.92936 0.97459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 8.85 71.98 0.64 -2.92 16 2 C -0.08 -2.22 2.51 -10.79 -0.03 -2.25 16 3 C -0.14 -3.07 8.84 71.98 0.64 -2.43 16 4 C -0.09 -2.91 1.92 -10.72 -0.02 -2.93 16 5 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 6 C -0.08 -2.75 4.46 30.62 0.14 -2.61 16 7 C 0.08 3.04 2.51 44.99 0.11 3.15 16 8 H 0.05 2.28 7.74 -2.39 -0.02 2.26 16 9 N -0.64 -21.84 6.50 -469.07 -3.05 -24.89 16 10 C -0.01 -0.17 6.03 44.91 0.27 0.10 16 11 C -0.15 -3.82 10.46 30.62 0.32 -3.50 16 12 C -0.19 -4.97 10.34 30.62 0.32 -4.66 16 13 C 0.17 8.13 4.58 86.36 0.40 8.52 16 14 N -0.61 -31.36 2.99 -699.10 -2.09 -33.45 16 15 C -0.26 -14.87 9.58 84.04 0.81 -14.06 16 16 H 0.06 3.55 7.88 -2.91 -0.02 3.52 16 17 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 18 N -0.93 -55.81 11.20 21.65 0.24 -55.57 16 19 Si 0.96 45.57 29.59 68.60 2.03 47.60 16 20 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 C 0.15 6.36 5.27 86.36 0.46 6.81 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.04 1.24 6.57 -2.39 -0.02 1.23 16 27 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.06 1.27 6.40 -2.39 -0.02 1.25 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.08 2.32 6.36 -2.39 -0.02 2.30 16 33 H 0.34 11.51 8.37 -89.69 -0.75 10.76 16 34 H 0.07 2.76 7.77 -2.38 -0.02 2.74 16 35 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 36 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 39 H 0.05 2.76 6.06 -2.38 -0.01 2.75 16 40 H -0.01 -0.50 8.05 -2.39 -0.02 -0.52 16 41 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 42 H 0.05 2.21 6.55 -2.39 -0.02 2.19 16 43 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 Total: -1.00 -61.99 329.64 1.80 -60.19 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.21 Total: 25.32 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 4.46 Total: -19.19 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -4.90 Total: -113.91 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -61.99 1.80 -60.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108035796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.741 kcal (2) G-P(sol) polarization free energy of solvation -61.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds