Wall clock time and date at job start Mon Mar 30 2020 04:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47530 * 2 1 4 4 C 1.53002 * 109.47150 * 239.99708 * 2 1 3 5 5 H 1.08999 * 109.49331 * 59.93572 * 4 2 1 6 6 C 1.53042 * 109.49610 * 299.84472 * 4 2 1 7 7 C 1.53045 * 109.53655 * 178.68324 * 6 4 2 8 8 H 1.08995 * 109.52418 * 181.32797 * 7 6 4 9 9 N 1.46902 * 109.49381 * 301.41469 * 7 6 4 10 10 C 1.46903 * 110.99349 * 204.83661 * 9 7 6 11 11 C 1.52998 * 117.49808 * 223.73946 * 10 9 7 12 12 C 1.53002 * 117.49537 * 155.08219 * 10 9 7 13 13 C 1.53193 * 109.31275 * 61.35925 * 7 6 4 14 14 N 1.46925 * 108.77770 * 305.37034 * 13 7 6 15 15 C 1.36936 * 120.62621 * 233.58463 * 14 13 7 16 16 H 1.08006 * 119.99853 * 151.84431 * 15 14 13 17 17 C 1.38810 * 120.00619 * 331.83811 * 15 14 13 18 18 N 1.31627 * 119.99711 * 343.08600 * 17 15 14 19 19 Si 1.86798 * 120.00245 * 163.07710 * 17 15 14 20 20 H 1.48495 * 109.46988 * 60.00621 * 19 17 15 21 21 H 1.48508 * 109.47150 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47435 * 300.00230 * 19 17 15 23 23 C 1.46921 * 118.74202 * 53.60452 * 14 13 7 24 24 H 1.08994 * 109.47940 * 179.97438 * 1 2 3 25 25 H 1.09009 * 109.47307 * 300.00050 * 1 2 3 26 26 H 1.09006 * 109.47106 * 59.99879 * 1 2 3 27 27 H 1.09006 * 109.47106 * 120.00121 * 2 1 3 28 28 H 1.09007 * 109.47366 * 59.99813 * 3 2 1 29 29 H 1.09000 * 109.47068 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47166 * 300.00073 * 3 2 1 31 31 H 1.09001 * 109.45662 * 298.69597 * 6 4 2 32 32 H 1.08996 * 109.46428 * 58.65881 * 6 4 2 33 33 H 1.00895 * 110.99769 * 328.78503 * 9 7 6 34 34 H 1.08997 * 115.55552 * 9.41598 * 10 9 7 35 35 H 1.09000 * 117.49840 * 0.02562 * 11 10 9 36 36 H 1.09005 * 117.50006 * 145.02268 * 11 10 9 37 37 H 1.09000 * 117.50129 * 214.97619 * 12 10 9 38 38 H 1.09004 * 117.49801 * 0.02562 * 12 10 9 39 39 H 1.08997 * 109.58828 * 185.57949 * 13 7 6 40 40 H 1.09001 * 109.70047 * 65.22463 * 13 7 6 41 41 H 0.97001 * 119.99591 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.59158 * 186.60541 * 23 14 13 43 43 H 1.08999 * 109.70339 * 66.25156 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6759 -0.2085 -2.1395 6 6 1.5333 -2.1655 -1.2478 7 6 2.0157 -2.8783 -2.5132 8 1 1.6352 -3.8996 -2.5235 9 7 1.5255 -2.1604 -3.6974 10 6 1.4366 -3.0574 -4.8574 11 6 1.9487 -2.5299 -6.1992 12 6 0.4447 -2.6875 -5.9620 13 6 3.5474 -2.9031 -2.5282 14 7 4.0441 -1.5280 -2.3836 15 6 4.9307 -1.0078 -3.2884 16 1 4.9519 0.0561 -3.4732 17 6 5.8023 -1.8477 -3.9678 18 7 6.0199 -3.0679 -3.5247 19 14 6.6662 -1.2465 -5.5110 20 1 7.4951 -0.0587 -5.1834 21 1 7.5360 -2.3259 -6.0438 22 1 5.6541 -0.8772 -6.5330 23 6 3.5718 -0.7217 -1.2498 24 1 -0.3635 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4423 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.9180 -2.6843 -0.3698 32 1 0.4437 -2.1681 -1.2225 33 1 0.6366 -1.7207 -3.5114 34 1 1.5811 -4.1166 -4.6448 35 1 2.3519 -1.5175 -6.2211 36 1 2.4298 -3.2422 -6.8695 37 1 -0.0630 -3.5034 -6.4765 38 1 -0.1416 -1.7783 -5.8282 39 1 3.8969 -3.3206 -3.4724 40 1 3.9130 -3.5125 -1.7017 41 1 6.6287 -3.6550 -3.9997 42 1 3.9375 0.3001 -1.3506 43 1 3.9375 -1.1502 -0.3167 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108035804.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:26 Heat of formation + Delta-G solvation = 37.158996 kcal Electronic energy + Delta-G solvation = -20255.060696 eV Core-core repulsion = 17529.057727 eV Total energy + Delta-G solvation = -2726.002969 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.74398 -36.86347 -34.88385 -33.16613 -31.03930 -29.13921 -27.92293 -26.87517 -24.92598 -22.62349 -21.90523 -21.45193 -20.65756 -19.56538 -18.58689 -16.54688 -15.38768 -15.07051 -14.93317 -14.41198 -13.91464 -13.65504 -13.41130 -13.26331 -12.81519 -12.76569 -12.09611 -12.04429 -11.83805 -11.62198 -11.20868 -11.04439 -10.92078 -10.81200 -10.67241 -10.62041 -10.42167 -10.23777 -10.12845 -9.96807 -9.81878 -9.67205 -9.27893 -9.24268 -8.27856 -7.50167 -6.42173 -5.60104 -2.98496 3.48778 3.53723 3.56595 4.32219 4.60455 4.65758 5.13608 5.26547 5.29496 5.38614 5.44123 5.54694 5.63966 5.70681 5.75695 5.82206 5.87282 5.92656 5.93981 6.06480 6.10675 6.12219 6.19628 6.23654 6.39494 6.43806 6.46177 6.55303 6.57444 6.63490 6.67026 6.74074 6.96583 7.00568 7.20146 7.37280 7.73792 7.89966 7.95893 8.08769 8.65629 9.41105 10.06177 10.62874 11.48775 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016432 B = 0.009164 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.549397 B = 3054.767443 C = 4061.764399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.092 4.092 5 H 0.075 0.925 6 C -0.107 4.107 7 C 0.064 3.936 8 H 0.026 0.974 9 N -0.626 5.626 10 C 0.035 3.965 11 C -0.162 4.162 12 C -0.207 4.207 13 C 0.184 3.816 14 N -0.574 5.574 15 C -0.227 4.227 16 H 0.058 0.942 17 C 0.001 3.999 18 N -0.909 5.909 19 Si 0.895 3.105 20 H -0.286 1.286 21 H -0.294 1.294 22 H -0.285 1.285 23 C 0.156 3.844 24 H 0.053 0.947 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.325 0.675 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.014 0.986 41 H 0.250 0.750 42 H 0.051 0.949 43 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.891 2.074 2.913 12.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.112 4.112 5 H 0.093 0.907 6 C -0.145 4.145 7 C -0.047 4.047 8 H 0.044 0.956 9 N -0.256 5.256 10 C -0.076 4.076 11 C -0.201 4.201 12 C -0.245 4.245 13 C 0.057 3.943 14 N -0.295 5.295 15 C -0.357 4.357 16 H 0.076 0.924 17 C -0.196 4.196 18 N -0.555 5.555 19 Si 0.726 3.274 20 H -0.213 1.213 21 H -0.220 1.220 22 H -0.211 1.211 23 C 0.029 3.971 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.144 0.856 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.032 0.968 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -11.122 2.202 2.693 11.653 hybrid contribution -0.327 -0.335 -0.680 0.825 sum -11.449 1.867 2.014 11.774 Atomic orbital electron populations 1.21869 0.96235 1.01232 1.00861 1.21149 0.94811 0.96182 0.99037 1.21841 1.01626 0.96064 1.00698 1.21615 0.98839 0.94285 0.96473 0.90652 1.21695 0.98404 0.96938 0.97499 1.22419 1.00940 0.93166 0.88196 0.95571 1.60138 1.31000 1.31015 1.03475 1.22313 1.02394 0.95164 0.87707 1.23015 0.94179 1.03379 0.99479 1.23248 0.93477 1.02730 1.05073 1.20742 0.85824 0.86397 1.01293 1.43693 1.49182 1.10970 1.25684 1.19004 1.09553 0.92357 1.14754 0.92410 1.24881 0.97548 0.96971 1.00186 1.70014 1.38411 1.07916 1.39138 0.86471 0.79084 0.77435 0.84387 1.21299 1.21989 1.21146 1.20904 0.90461 0.95336 0.90370 0.92832 0.93631 0.93037 0.91914 0.93749 0.92145 0.92968 0.92314 0.93610 0.85595 0.89182 0.88165 0.89703 0.89706 0.89244 0.89213 0.96792 0.94031 0.93032 0.97245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.85 37.15 0.33 -1.41 16 2 C -0.09 -1.30 2.51 -90.62 -0.23 -1.53 16 3 C -0.15 -1.94 8.84 37.15 0.33 -1.61 16 4 C -0.09 -1.56 1.77 -90.50 -0.16 -1.72 16 5 H 0.08 1.39 7.37 -51.93 -0.38 1.01 16 6 C -0.11 -1.78 4.24 -26.69 -0.11 -1.89 16 7 C 0.06 1.21 2.81 -67.59 -0.19 1.02 16 8 H 0.03 0.48 7.57 -51.93 -0.39 0.09 16 9 N -0.63 -11.39 5.71 -99.61 -0.57 -11.96 16 10 C 0.04 0.61 5.98 -67.71 -0.40 0.20 16 11 C -0.16 -2.84 10.46 -26.70 -0.28 -3.11 16 12 C -0.21 -2.98 10.34 -26.69 -0.28 -3.25 16 13 C 0.18 4.42 4.86 -3.71 -0.02 4.40 16 14 N -0.57 -14.38 2.91 -172.33 -0.50 -14.88 16 15 C -0.23 -6.31 9.58 -15.06 -0.14 -6.45 16 16 H 0.06 1.61 7.89 -52.48 -0.41 1.20 16 17 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 18 N -0.91 -26.80 11.20 55.49 0.62 -26.18 16 19 Si 0.90 22.43 29.59 -169.99 -5.03 17.40 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 23 C 0.16 3.29 5.27 -3.72 -0.02 3.27 16 24 H 0.05 0.63 6.40 -51.93 -0.33 0.30 16 25 H 0.04 0.49 8.14 -51.92 -0.42 0.07 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.87 6.56 -51.93 -0.34 0.52 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.66 6.36 -51.93 -0.33 0.33 16 33 H 0.33 5.29 8.09 -39.29 -0.32 4.97 16 34 H 0.09 1.56 7.60 -51.93 -0.39 1.17 16 35 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 36 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.09 2.45 5.91 -51.93 -0.31 2.14 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.05 1.09 6.55 -51.93 -0.34 0.75 16 43 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 327.47 15.07 4.93 4.93 Total: -1.00 -28.96 327.47 -9.57 -38.53 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -7.76 Total: 4.31 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -1.26 Total: -12.14 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.45 Total: -53.02 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.96 -9.57 -38.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108035804.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.689 kcal (2) G-P(sol) polarization free energy of solvation -28.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds