Wall clock time and date at job start Mon Mar 30 2020 04:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47254 * 2 1 4 4 H 1.08996 * 109.52198 * 304.91860 * 3 2 1 5 5 C 1.53034 * 109.49770 * 184.83471 * 3 2 1 6 6 C 1.53045 * 109.53597 * 178.68263 * 5 3 2 7 7 H 1.09001 * 109.49694 * 301.41485 * 6 5 3 8 8 N 1.46907 * 109.49630 * 181.31822 * 6 5 3 9 9 C 1.46898 * 110.99576 * 154.99954 * 8 6 5 10 10 C 1.53005 * 109.46850 * 180.02562 * 9 8 6 11 11 C 1.53003 * 117.49654 * 243.62351 * 10 9 8 12 12 C 1.53000 * 117.49794 * 175.00194 * 10 9 8 13 13 C 1.53188 * 109.31053 * 61.36750 * 6 5 3 14 14 N 1.46952 * 108.89105 * 305.44304 * 13 6 5 15 15 C 1.36940 * 120.65302 * 233.53928 * 14 13 6 16 16 H 1.08000 * 119.99751 * 151.72886 * 15 14 13 17 17 C 1.38810 * 120.00078 * 331.72798 * 15 14 13 18 18 N 1.31619 * 119.99689 * 343.17980 * 17 15 14 19 19 Si 1.86795 * 119.99988 * 163.18147 * 17 15 14 20 20 H 1.48499 * 109.47320 * 89.99982 * 19 17 15 21 21 H 1.48500 * 109.47299 * 209.99808 * 19 17 15 22 22 H 1.48507 * 109.47261 * 329.99989 * 19 17 15 23 23 C 1.46921 * 118.71819 * 53.35410 * 14 13 6 24 24 H 1.09004 * 109.46841 * 299.99873 * 1 2 3 25 25 H 1.08994 * 109.46907 * 60.00268 * 1 2 3 26 26 H 1.09002 * 109.46780 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47507 * 239.99886 * 2 1 3 28 28 H 1.09008 * 109.47025 * 119.99694 * 2 1 3 29 29 H 1.09002 * 109.46609 * 298.70503 * 5 3 2 30 30 H 1.09002 * 109.45887 * 58.66414 * 5 3 2 31 31 H 1.00900 * 110.99947 * 31.04748 * 8 6 5 32 32 H 1.09002 * 109.47590 * 299.99779 * 9 8 6 33 33 H 1.09000 * 109.47324 * 60.00098 * 9 8 6 34 34 H 1.09004 * 115.55145 * 29.32556 * 10 9 8 35 35 H 1.08998 * 117.49494 * 359.97438 * 11 10 9 36 36 H 1.08996 * 117.49943 * 145.01908 * 11 10 9 37 37 H 1.08999 * 117.49633 * 214.97579 * 12 10 9 38 38 H 1.08994 * 117.49930 * 359.97154 * 12 10 9 39 39 H 1.09000 * 109.58508 * 65.15887 * 13 6 5 40 40 H 1.09008 * 109.58028 * 185.57261 * 13 6 5 41 41 H 0.97000 * 119.99637 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.59204 * 186.78245 * 23 14 13 43 43 H 1.09006 * 109.58330 * 66.50284 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6070 1.9819 -0.8423 5 6 3.5655 1.4449 -0.1216 6 6 4.0740 2.8880 -0.1547 7 1 3.6219 3.4139 -0.9957 8 7 5.5356 2.8896 -0.3032 9 6 6.0009 4.1404 -0.9170 10 6 7.5243 4.1046 -1.0555 11 6 8.3300 5.1371 -0.2645 12 6 8.1952 5.2716 -1.7827 13 6 3.6921 3.5899 1.1523 14 7 2.2416 3.4655 1.3529 15 6 1.4696 4.5749 1.5728 16 1 0.4313 4.5777 1.2754 17 6 2.0214 5.6957 2.1779 18 7 3.1586 5.5970 2.8331 19 14 1.1499 7.3438 2.0624 20 1 0.2164 7.4916 3.2078 21 1 2.1533 8.4379 2.0974 22 1 0.3870 7.4123 0.7901 23 6 1.6350 2.1281 1.3088 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.9989 0.9267 0.7339 30 1 3.8574 0.9359 -1.0402 31 1 5.8460 2.0892 -0.8333 32 1 5.5494 4.2513 -1.9029 33 1 5.7126 4.9829 -0.2885 34 1 7.9617 3.1142 -1.1823 35 1 7.7747 5.8422 0.3541 36 1 9.2976 4.8262 0.1292 37 1 9.0742 5.0492 -2.3876 38 1 7.5513 6.0647 -2.1628 39 1 4.2156 3.1209 1.9854 40 1 3.9641 4.6438 1.0940 41 1 3.5440 6.3801 3.2562 42 1 0.5496 2.2174 1.3539 43 1 1.9885 1.5385 2.1547 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108086442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:17 Heat of formation + Delta-G solvation = 28.868432 kcal Electronic energy + Delta-G solvation = -19491.336674 eV Core-core repulsion = 16764.974199 eV Total energy + Delta-G solvation = -2726.362475 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.45537 -37.30483 -34.67635 -34.00208 -31.27221 -29.79478 -27.95837 -25.35169 -24.94938 -23.06593 -22.21416 -21.77294 -20.33477 -19.77070 -18.95342 -16.67921 -15.65741 -15.05720 -14.94526 -14.58108 -14.11062 -13.89400 -13.80069 -13.16318 -13.00404 -12.70144 -12.54440 -12.22732 -12.12986 -11.42444 -11.35271 -11.13724 -10.96628 -10.92100 -10.83958 -10.59197 -10.43462 -10.28203 -10.18467 -10.08862 -9.83177 -9.75439 -9.51196 -9.28230 -8.39898 -7.85724 -6.58333 -5.72506 -3.15758 3.38990 3.46097 3.48310 3.92729 4.46283 4.57802 4.97324 5.11305 5.19495 5.31206 5.32418 5.44175 5.48492 5.58865 5.70077 5.73715 5.74023 5.81965 5.94762 5.97071 6.01435 6.08064 6.09472 6.15785 6.27710 6.29402 6.38587 6.43145 6.49499 6.52603 6.60752 6.65329 6.90434 6.94180 7.11990 7.37163 7.57537 7.84131 7.86475 7.98671 8.51713 9.27835 9.91536 10.48663 11.34863 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.008611 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.018696 B = 3250.721857 C = 5263.174783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.103 4.103 4 H 0.063 0.937 5 C -0.103 4.103 6 C 0.062 3.938 7 H 0.034 0.966 8 N -0.678 5.678 9 C 0.091 3.909 10 C -0.143 4.143 11 C -0.173 4.173 12 C -0.187 4.187 13 C 0.188 3.812 14 N -0.593 5.593 15 C -0.253 4.253 16 H 0.063 0.937 17 C 0.003 3.997 18 N -0.897 5.897 19 Si 0.898 3.102 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.152 3.848 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.327 0.673 32 H 0.025 0.975 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.025 0.975 40 H 0.083 0.917 41 H 0.253 0.747 42 H 0.053 0.947 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.689 -6.730 -8.375 11.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.124 4.124 4 H 0.082 0.918 5 C -0.141 4.141 6 C -0.048 4.048 7 H 0.052 0.948 8 N -0.309 5.309 9 C -0.038 4.038 10 C -0.162 4.162 11 C -0.210 4.210 12 C -0.225 4.225 13 C 0.062 3.938 14 N -0.315 5.315 15 C -0.383 4.383 16 H 0.081 0.919 17 C -0.195 4.195 18 N -0.541 5.541 19 Si 0.727 3.273 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.026 3.974 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.144 0.856 32 H 0.043 0.957 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.043 0.957 40 H 0.101 0.899 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 4.875 -6.352 -7.617 11.051 hybrid contribution -0.589 0.770 -0.982 1.380 sum 4.286 -5.582 -8.599 11.112 Atomic orbital electron populations 1.21791 0.96246 1.00636 1.02168 1.21503 0.95637 0.97005 1.01056 1.21683 0.94800 0.94886 1.01009 0.91811 1.21609 0.95886 0.96298 1.00337 1.22376 0.85062 0.96157 1.01238 0.94810 1.60447 1.12543 1.03270 1.54641 1.21543 0.91289 0.94214 0.96754 1.22256 0.94784 0.94649 1.04480 1.22984 1.01641 1.02757 0.93614 1.22957 1.02844 1.01357 0.95342 1.20661 0.82920 1.00096 0.90126 1.44043 1.03831 1.00933 1.82725 1.19135 0.94686 0.91601 1.32882 0.91887 1.25039 0.97890 0.99259 0.97357 1.70058 1.20296 1.28552 1.35191 0.86375 0.78766 0.84201 0.77912 1.21372 1.21595 1.20574 1.20971 0.96674 0.87098 0.92705 0.92161 0.93084 0.93569 0.92982 0.92295 0.91893 0.94027 0.85607 0.95683 0.90291 0.88020 0.88466 0.89213 0.89229 0.89000 0.95715 0.89862 0.93714 0.92854 0.96555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.67 37.16 0.36 -1.63 16 2 C -0.11 -1.62 5.41 -26.73 -0.14 -1.76 16 3 C -0.10 -1.81 2.34 -90.50 -0.21 -2.02 16 4 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 5 C -0.10 -1.78 4.45 -26.69 -0.12 -1.90 16 6 C 0.06 1.22 2.64 -67.59 -0.18 1.05 16 7 H 0.03 0.71 7.80 -51.93 -0.41 0.31 16 8 N -0.68 -11.67 6.31 -106.59 -0.67 -12.34 16 9 C 0.09 1.49 5.77 -3.82 -0.02 1.47 16 10 C -0.14 -1.95 5.95 -90.62 -0.54 -2.49 16 11 C -0.17 -2.28 10.18 -26.73 -0.27 -2.55 16 12 C -0.19 -2.23 10.25 -26.73 -0.27 -2.51 16 13 C 0.19 4.63 4.77 -3.70 -0.02 4.61 16 14 N -0.59 -15.14 3.00 -172.29 -0.52 -15.66 16 15 C -0.25 -7.06 9.58 -15.06 -0.14 -7.20 16 16 H 0.06 1.73 7.88 -52.49 -0.41 1.31 16 17 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 18 N -0.90 -26.40 11.20 55.49 0.62 -25.78 16 19 Si 0.90 21.92 29.59 -169.99 -5.03 16.89 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.15 3.24 5.40 -3.71 -0.02 3.22 16 24 H 0.06 0.84 6.70 -51.93 -0.35 0.50 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.04 0.63 8.10 -51.93 -0.42 0.20 16 31 H 0.33 4.85 8.32 -39.29 -0.33 4.53 16 32 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 33 H 0.08 1.49 7.30 -51.93 -0.38 1.11 16 34 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 35 H 0.10 1.40 8.03 -51.93 -0.42 0.98 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.08 2.30 5.55 -51.92 -0.29 2.01 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.05 1.12 6.65 -51.93 -0.35 0.77 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 333.15 15.07 5.02 5.02 Total: -1.00 -29.11 333.15 -10.22 -39.33 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.97 Total: 4.25 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -1.67 Total: -11.71 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.57 Total: -53.78 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.11 -10.22 -39.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108086442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.195 kcal (2) G-P(sol) polarization free energy of solvation -29.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds