Wall clock time and date at job start Mon Mar 30 2020 04:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47254 * 2 1 4 4 H 1.08996 * 109.52198 * 304.91860 * 3 2 1 5 5 C 1.53034 * 109.49770 * 184.83471 * 3 2 1 6 6 C 1.53045 * 109.53597 * 178.68263 * 5 3 2 7 7 H 1.09001 * 109.49694 * 301.41485 * 6 5 3 8 8 N 1.46907 * 109.49630 * 181.31822 * 6 5 3 9 9 C 1.46898 * 110.99576 * 154.99954 * 8 6 5 10 10 C 1.53005 * 109.46850 * 180.02562 * 9 8 6 11 11 C 1.53003 * 117.49654 * 243.62351 * 10 9 8 12 12 C 1.53000 * 117.49794 * 175.00194 * 10 9 8 13 13 C 1.53188 * 109.31053 * 61.36750 * 6 5 3 14 14 N 1.46952 * 108.89105 * 305.44304 * 13 6 5 15 15 C 1.36940 * 120.65302 * 233.53928 * 14 13 6 16 16 H 1.08000 * 119.99751 * 151.72886 * 15 14 13 17 17 C 1.38810 * 120.00078 * 331.72798 * 15 14 13 18 18 N 1.31619 * 119.99689 * 343.17980 * 17 15 14 19 19 Si 1.86795 * 119.99988 * 163.18147 * 17 15 14 20 20 H 1.48499 * 109.47320 * 89.99982 * 19 17 15 21 21 H 1.48500 * 109.47299 * 209.99808 * 19 17 15 22 22 H 1.48507 * 109.47261 * 329.99989 * 19 17 15 23 23 C 1.46921 * 118.71819 * 53.35410 * 14 13 6 24 24 H 1.09004 * 109.46841 * 299.99873 * 1 2 3 25 25 H 1.08994 * 109.46907 * 60.00268 * 1 2 3 26 26 H 1.09002 * 109.46780 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47507 * 239.99886 * 2 1 3 28 28 H 1.09008 * 109.47025 * 119.99694 * 2 1 3 29 29 H 1.09002 * 109.46609 * 298.70503 * 5 3 2 30 30 H 1.09002 * 109.45887 * 58.66414 * 5 3 2 31 31 H 1.00900 * 110.99947 * 31.04748 * 8 6 5 32 32 H 1.09002 * 109.47590 * 299.99779 * 9 8 6 33 33 H 1.09000 * 109.47324 * 60.00098 * 9 8 6 34 34 H 1.09004 * 115.55145 * 29.32556 * 10 9 8 35 35 H 1.08998 * 117.49494 * 359.97438 * 11 10 9 36 36 H 1.08996 * 117.49943 * 145.01908 * 11 10 9 37 37 H 1.08999 * 117.49633 * 214.97579 * 12 10 9 38 38 H 1.08994 * 117.49930 * 359.97154 * 12 10 9 39 39 H 1.09000 * 109.58508 * 65.15887 * 13 6 5 40 40 H 1.09008 * 109.58028 * 185.57261 * 13 6 5 41 41 H 0.97000 * 119.99637 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.59204 * 186.78245 * 23 14 13 43 43 H 1.09006 * 109.58330 * 66.50284 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6070 1.9819 -0.8423 5 6 3.5655 1.4449 -0.1216 6 6 4.0740 2.8880 -0.1547 7 1 3.6219 3.4139 -0.9957 8 7 5.5356 2.8896 -0.3032 9 6 6.0009 4.1404 -0.9170 10 6 7.5243 4.1046 -1.0555 11 6 8.3300 5.1371 -0.2645 12 6 8.1952 5.2716 -1.7827 13 6 3.6921 3.5899 1.1523 14 7 2.2416 3.4655 1.3529 15 6 1.4696 4.5749 1.5728 16 1 0.4313 4.5777 1.2754 17 6 2.0214 5.6957 2.1779 18 7 3.1586 5.5970 2.8331 19 14 1.1499 7.3438 2.0624 20 1 0.2164 7.4916 3.2078 21 1 2.1533 8.4379 2.0974 22 1 0.3870 7.4123 0.7901 23 6 1.6350 2.1281 1.3088 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.9989 0.9267 0.7339 30 1 3.8574 0.9359 -1.0402 31 1 5.8460 2.0892 -0.8333 32 1 5.5494 4.2513 -1.9029 33 1 5.7126 4.9829 -0.2885 34 1 7.9617 3.1142 -1.1823 35 1 7.7747 5.8422 0.3541 36 1 9.2976 4.8262 0.1292 37 1 9.0742 5.0492 -2.3876 38 1 7.5513 6.0647 -2.1628 39 1 4.2156 3.1209 1.9854 40 1 3.9641 4.6438 1.0940 41 1 3.5440 6.3801 3.2562 42 1 0.5496 2.2174 1.3539 43 1 1.9885 1.5385 2.1547 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108086442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:16 Heat of formation + Delta-G solvation = 11.809787 kcal Electronic energy + Delta-G solvation = -19492.076393 eV Core-core repulsion = 16764.974199 eV Total energy + Delta-G solvation = -2727.102193 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.02577 -38.50505 -36.02099 -35.84526 -33.07472 -31.39754 -29.48737 -27.34316 -26.42363 -24.35993 -23.61084 -23.21282 -21.61766 -21.20133 -20.54719 -18.70418 -16.93025 -16.79662 -16.49440 -16.01493 -15.78419 -15.39187 -15.18210 -14.60549 -14.45329 -14.17434 -14.08673 -13.86430 -13.57089 -13.05215 -12.81638 -12.71278 -12.41934 -12.34393 -12.26926 -12.19838 -12.04744 -12.02738 -11.67015 -11.44359 -11.37131 -11.05813 -10.95349 -10.89235 -10.52757 -9.32087 -8.66022 -7.86892 -5.34216 1.42510 1.43737 1.53656 2.48114 2.82945 3.15921 3.30206 3.77061 3.89714 3.94753 4.02141 4.06541 4.12036 4.24791 4.35581 4.46971 4.51944 4.60130 4.63646 4.69971 4.72080 4.75939 4.79727 4.87344 5.00101 5.03718 5.06843 5.20139 5.21541 5.26118 5.27037 5.33112 5.34894 5.46310 5.49848 5.60010 5.65028 5.75754 6.14691 6.38496 6.65957 7.14345 7.86673 8.38409 9.17840 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.008611 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.018696 B = 3250.721857 C = 5263.174783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.106 4.106 3 C -0.093 4.093 4 H 0.056 0.944 5 C -0.096 4.096 6 C 0.077 3.923 7 H 0.022 0.978 8 N -0.681 5.681 9 C 0.095 3.905 10 C -0.150 4.150 11 C -0.185 4.185 12 C -0.167 4.167 13 C 0.202 3.798 14 N -0.612 5.612 15 C -0.266 4.266 16 H 0.065 0.935 17 C -0.050 4.050 18 N -0.930 5.930 19 Si 0.964 3.036 20 H -0.282 1.282 21 H -0.293 1.293 22 H -0.270 1.270 23 C 0.149 3.851 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.347 0.653 32 H 0.031 0.969 33 H 0.040 0.960 34 H 0.120 0.880 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.088 0.912 39 H -0.011 1.011 40 H 0.044 0.956 41 H 0.248 0.752 42 H 0.052 0.948 43 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.921 -8.228 -10.458 14.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.144 4.144 3 C -0.114 4.114 4 H 0.075 0.925 5 C -0.134 4.134 6 C -0.034 4.034 7 H 0.040 0.960 8 N -0.314 5.314 9 C -0.034 4.034 10 C -0.169 4.169 11 C -0.222 4.222 12 C -0.204 4.204 13 C 0.076 3.924 14 N -0.336 5.336 15 C -0.396 4.396 16 H 0.083 0.917 17 C -0.246 4.246 18 N -0.576 5.576 19 Si 0.791 3.209 20 H -0.208 1.208 21 H -0.219 1.219 22 H -0.195 1.195 23 C 0.024 3.976 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.167 0.833 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.138 0.862 35 H 0.092 0.908 36 H 0.125 0.875 37 H 0.135 0.865 38 H 0.107 0.893 39 H 0.007 0.993 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 5.100 -7.886 -9.722 13.517 hybrid contribution -0.671 1.219 -0.284 1.420 sum 4.429 -6.667 -10.006 12.814 Atomic orbital electron populations 1.21782 0.95537 1.01984 1.01473 1.21453 0.96225 0.94324 1.02415 1.21548 0.95102 0.96780 0.97951 0.92524 1.21570 0.95467 0.94405 1.01986 1.21993 0.86673 0.97262 0.97517 0.96044 1.60270 1.10904 1.04515 1.55702 1.21442 0.93594 0.92472 0.95888 1.22208 0.92692 0.96098 1.05856 1.23014 1.02076 1.02469 0.94673 1.23043 1.03103 0.99846 0.94414 1.20342 0.82481 0.98009 0.91591 1.44325 1.04054 1.02135 1.83043 1.19477 0.95081 0.92750 1.32274 0.91720 1.25821 0.98794 1.02577 0.97393 1.70228 1.21918 1.29032 1.36394 0.85341 0.77588 0.79742 0.78208 1.20829 1.21905 1.19509 1.21131 0.96405 0.85366 0.94739 0.93743 0.92937 0.91217 0.90436 0.92027 0.92266 0.90310 0.83300 0.95063 0.94162 0.86234 0.90805 0.87500 0.86494 0.89304 0.99273 0.93714 0.94266 0.92971 0.97481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.67 71.98 0.70 -2.89 16 2 C -0.11 -2.70 5.41 30.59 0.17 -2.53 16 3 C -0.09 -3.13 2.34 -10.72 -0.03 -3.16 16 4 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 5 C -0.10 -3.15 4.45 30.62 0.14 -3.01 16 6 C 0.08 3.03 2.64 44.99 0.12 3.15 16 7 H 0.02 0.91 7.80 -2.39 -0.02 0.89 16 8 N -0.68 -23.18 6.31 -491.14 -3.10 -26.28 16 9 C 0.10 3.13 5.77 86.31 0.50 3.63 16 10 C -0.15 -3.89 5.95 -10.79 -0.06 -3.96 16 11 C -0.19 -4.79 10.18 30.60 0.31 -4.48 16 12 C -0.17 -3.65 10.25 30.60 0.31 -3.33 16 13 C 0.20 10.42 4.77 86.36 0.41 10.83 16 14 N -0.61 -32.33 3.00 -699.01 -2.10 -34.42 16 15 C -0.27 -15.23 9.58 84.03 0.81 -14.42 16 16 H 0.07 3.61 7.88 -2.91 -0.02 3.58 16 17 C -0.05 -2.91 4.92 84.86 0.42 -2.50 16 18 N -0.93 -57.38 11.20 21.65 0.24 -57.13 16 19 Si 0.96 46.28 29.59 68.60 2.03 48.31 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 23 C 0.15 6.41 5.40 86.37 0.47 6.88 16 24 H 0.04 1.18 6.70 -2.38 -0.02 1.17 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.08 2.05 8.10 -2.39 -0.02 2.03 16 31 H 0.35 9.52 8.32 -89.69 -0.75 8.78 16 32 H 0.03 0.98 8.06 -2.39 -0.02 0.96 16 33 H 0.04 1.62 7.30 -2.39 -0.02 1.60 16 34 H 0.12 2.70 8.13 -2.39 -0.02 2.68 16 35 H 0.07 2.24 8.03 -2.39 -0.02 2.22 16 36 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 39 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 40 H 0.04 2.63 5.55 -2.38 -0.01 2.62 16 41 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 42 H 0.05 2.21 6.65 -2.39 -0.02 2.20 16 43 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 Total: -1.00 -66.04 333.15 1.53 -64.50 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.21 Total: 20.82 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 4.25 Total: -15.79 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -4.95 Total: -117.84 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -66.04 1.53 -64.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108086442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.312 kcal (2) G-P(sol) polarization free energy of solvation -66.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds