Wall clock time and date at job start Mon Mar 30 2020 04:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47371 * 2 1 4 4 H 1.09009 * 109.52265 * 55.08503 * 3 2 1 5 5 C 1.53041 * 109.50336 * 175.16306 * 3 2 1 6 6 C 1.53035 * 109.53734 * 181.31757 * 5 3 2 7 7 H 1.09008 * 109.49192 * 178.65286 * 6 5 3 8 8 N 1.46895 * 109.49957 * 58.59064 * 6 5 3 9 9 C 1.46908 * 111.00311 * 154.99765 * 8 6 5 10 10 C 1.53000 * 109.47092 * 180.02562 * 9 8 6 11 11 C 1.52999 * 117.49610 * 243.74207 * 10 9 8 12 12 C 1.53001 * 117.49550 * 175.08672 * 10 9 8 13 13 C 1.53624 * 109.24536 * 298.51216 * 6 5 3 14 14 N 1.46923 * 108.54013 * 54.85773 * 13 6 5 15 15 C 1.36939 * 120.62675 * 126.37346 * 14 13 6 16 16 H 1.08005 * 119.99665 * 213.85214 * 15 14 13 17 17 C 1.38814 * 120.00261 * 33.85446 * 15 14 13 18 18 N 1.31620 * 119.99730 * 204.77213 * 17 15 14 19 19 Si 1.86799 * 119.99980 * 24.77186 * 17 15 14 20 20 H 1.48496 * 109.46823 * 180.02562 * 19 17 15 21 21 H 1.48501 * 109.46942 * 60.00303 * 19 17 15 22 22 H 1.48497 * 109.47053 * 299.99898 * 19 17 15 23 23 C 1.46918 * 118.74245 * 306.09273 * 14 13 6 24 24 H 1.09000 * 109.46839 * 299.99255 * 1 2 3 25 25 H 1.08997 * 109.47751 * 59.99469 * 1 2 3 26 26 H 1.09001 * 109.47385 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47265 * 240.00422 * 2 1 3 28 28 H 1.08997 * 109.47751 * 120.00531 * 2 1 3 29 29 H 1.08994 * 109.46022 * 301.34185 * 5 3 2 30 30 H 1.09004 * 109.45450 * 61.29945 * 5 3 2 31 31 H 1.00901 * 111.00189 * 278.95055 * 8 6 5 32 32 H 1.09004 * 109.46571 * 300.00083 * 9 8 6 33 33 H 1.08996 * 109.46668 * 59.99625 * 9 8 6 34 34 H 1.08994 * 115.55119 * 29.41783 * 10 9 8 35 35 H 1.08998 * 117.49576 * 0.02562 * 11 10 9 36 36 H 1.09003 * 117.49736 * 145.01862 * 11 10 9 37 37 H 1.08997 * 117.49514 * 214.97987 * 12 10 9 38 38 H 1.09001 * 117.50072 * 0.02562 * 12 10 9 39 39 H 1.08998 * 109.73851 * 295.12195 * 13 6 5 40 40 H 1.09004 * 109.66623 * 174.55115 * 13 6 5 41 41 H 0.96996 * 120.00330 * 5.14162 * 18 17 15 42 42 H 1.08998 * 109.58887 * 173.65307 * 23 14 13 43 43 H 1.09002 * 109.59033 * 294.07920 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6070 1.9819 0.8425 5 6 3.5656 1.4450 0.1216 6 6 4.0740 2.8880 0.1548 7 1 5.1584 2.8891 0.2655 8 7 3.4647 3.5966 1.2881 9 6 4.3079 4.7186 1.7224 10 6 3.6421 5.4301 2.9020 11 6 3.2100 6.8835 2.6976 12 6 4.4216 6.5611 3.5758 13 6 3.6928 3.5894 -1.1578 14 7 2.2414 3.4657 -1.3492 15 6 1.4693 4.5755 -1.5670 16 1 0.4603 4.6150 -1.1838 17 6 1.9834 5.6496 -2.2803 18 7 1.4938 6.8573 -2.0953 19 14 3.3701 5.3811 -3.5027 20 1 3.7367 6.6773 -4.1279 21 1 2.9258 4.4317 -4.5546 22 1 4.5506 4.8212 -2.7970 23 6 1.6349 2.1281 -1.3087 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8574 0.9359 1.0401 30 1 3.9988 0.9268 -0.7339 31 1 2.5337 3.9114 1.0595 32 1 5.2837 4.3420 2.0293 33 1 4.4321 5.4201 0.8975 34 1 3.0156 4.8032 3.5363 35 1 3.3997 7.3325 1.7227 36 1 2.2993 7.2128 3.1978 37 1 4.3075 6.6785 4.6534 38 1 5.4084 6.7986 3.1785 39 1 4.2129 3.1179 -1.9916 40 1 3.9656 4.6433 -1.1031 41 1 0.8263 7.0100 -1.4083 42 1 0.5495 2.2175 -1.3538 43 1 1.9906 1.5398 -2.1546 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108086444.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:19 Heat of formation + Delta-G solvation = 30.963296 kcal Electronic energy + Delta-G solvation = -20072.822688 eV Core-core repulsion = 17346.551053 eV Total energy + Delta-G solvation = -2726.271635 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.81895 -37.17554 -34.58476 -33.86776 -31.50831 -30.07712 -28.34484 -25.01521 -24.94379 -23.45255 -22.10060 -21.35069 -20.59609 -20.02905 -18.73596 -17.25610 -16.00865 -15.17055 -14.90282 -14.31881 -14.23305 -13.87327 -13.66488 -13.31452 -13.18853 -12.74445 -12.65840 -12.41124 -11.85043 -11.65964 -11.54844 -11.35024 -11.24887 -11.14907 -10.85065 -10.73707 -10.26223 -10.10913 -10.00442 -9.84283 -9.69442 -9.61719 -9.51468 -9.13863 -8.46997 -7.76391 -6.89915 -6.29520 -3.37061 3.42309 3.53759 3.69667 4.06138 4.61533 4.66853 5.01612 5.14425 5.21502 5.22801 5.34155 5.35674 5.44457 5.47804 5.70612 5.76124 5.78427 5.82912 5.85118 5.98289 6.00035 6.08316 6.18203 6.20447 6.25356 6.26681 6.34576 6.35898 6.39393 6.46960 6.49612 6.55597 6.63265 6.76623 6.81176 6.88685 7.10434 7.68749 8.08789 8.11853 8.48124 9.04112 9.60715 10.22986 11.08796 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.012749 B = 0.010529 C = 0.006985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.657593 B = 2658.706750 C = 4007.887370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.103 4.103 4 H 0.074 0.926 5 C -0.090 4.090 6 C 0.066 3.934 7 H 0.062 0.938 8 N -0.676 5.676 9 C 0.090 3.910 10 C -0.143 4.143 11 C -0.178 4.178 12 C -0.184 4.184 13 C 0.110 3.890 14 N -0.600 5.600 15 C -0.348 4.348 16 H 0.063 0.937 17 C 0.000 4.000 18 N -0.912 5.912 19 Si 1.033 2.967 20 H -0.297 1.297 21 H -0.293 1.293 22 H -0.278 1.278 23 C 0.148 3.852 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.358 0.642 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.024 0.976 40 H 0.068 0.932 41 H 0.265 0.735 42 H 0.058 0.942 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.437 -8.219 7.650 12.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.123 4.123 4 H 0.093 0.907 5 C -0.128 4.128 6 C -0.047 4.047 7 H 0.081 0.919 8 N -0.309 5.309 9 C -0.040 4.040 10 C -0.161 4.161 11 C -0.215 4.215 12 C -0.221 4.221 13 C -0.017 4.017 14 N -0.324 5.324 15 C -0.476 4.476 16 H 0.080 0.920 17 C -0.203 4.203 18 N -0.550 5.550 19 Si 0.863 3.137 20 H -0.224 1.224 21 H -0.220 1.220 22 H -0.205 1.205 23 C 0.022 3.978 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.179 0.821 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.124 0.876 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.042 0.958 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 5.576 -7.857 6.974 11.894 hybrid contribution -1.097 -0.109 0.301 1.143 sum 4.479 -7.966 7.275 11.681 Atomic orbital electron populations 1.21787 0.96345 1.00580 1.02121 1.21512 0.95569 0.97234 1.00953 1.21622 0.95417 0.94745 1.00528 0.90715 1.21398 0.95833 0.95404 1.00186 1.22101 0.96977 0.94379 0.91193 0.91932 1.60757 1.06994 1.26541 1.36623 1.21454 0.95904 0.92155 0.94464 1.22261 1.03029 0.90568 1.00292 1.23047 0.98092 0.98818 1.01533 1.22909 0.96587 1.04247 0.98374 1.22235 0.85813 0.99351 0.94351 1.44341 1.02346 1.02317 1.83417 1.20128 0.99259 0.94166 1.34094 0.91966 1.26247 1.02403 0.92509 0.99164 1.70890 1.29396 1.20331 1.34367 0.84439 0.76805 0.74757 0.77728 1.22394 1.21961 1.20526 1.21109 0.97134 0.86334 0.93194 0.92989 0.92367 0.93641 0.92646 0.92774 0.92727 0.92892 0.82076 0.91863 0.94991 0.87573 0.88483 0.89216 0.89270 0.89189 0.95826 0.91335 0.92538 0.92371 0.96582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.67 37.16 0.36 -1.63 16 2 C -0.11 -1.59 5.41 -26.74 -0.14 -1.73 16 3 C -0.10 -1.72 2.07 -90.50 -0.19 -1.91 16 4 H 0.07 1.37 7.12 -51.92 -0.37 1.00 16 5 C -0.09 -1.46 4.89 -26.69 -0.13 -1.59 16 6 C 0.07 1.18 2.87 -67.37 -0.19 0.98 16 7 H 0.06 1.05 7.80 -51.92 -0.41 0.65 16 8 N -0.68 -12.20 5.73 -106.36 -0.61 -12.81 16 9 C 0.09 1.51 5.77 -3.82 -0.02 1.49 16 10 C -0.14 -2.20 5.95 -90.62 -0.54 -2.74 16 11 C -0.18 -2.76 10.18 -26.70 -0.27 -3.03 16 12 C -0.18 -2.43 10.25 -26.70 -0.27 -2.71 16 13 C 0.11 2.35 3.50 -3.49 -0.01 2.34 16 14 N -0.60 -13.88 1.90 -172.06 -0.33 -14.21 16 15 C -0.35 -9.45 9.77 -15.06 -0.15 -9.60 16 16 H 0.06 1.83 8.06 -52.48 -0.42 1.41 16 17 C 0.00 -0.01 5.08 -17.43 -0.09 -0.10 16 18 N -0.91 -27.58 13.70 55.49 0.76 -26.82 16 19 Si 1.03 25.72 26.37 -169.99 -4.48 21.23 16 20 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.28 -6.34 4.93 56.52 0.28 -6.06 16 23 C 0.15 2.95 5.40 -3.71 -0.02 2.93 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.81 6.70 -51.93 -0.35 0.47 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.36 7.42 7.07 -39.29 -0.28 7.14 16 32 H 0.06 0.98 8.06 -51.93 -0.42 0.56 16 33 H 0.03 0.61 7.14 -51.93 -0.37 0.24 16 34 H 0.11 1.63 8.14 -51.93 -0.42 1.20 16 35 H 0.10 1.69 8.03 -51.93 -0.42 1.27 16 36 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.02 0.51 7.02 -51.93 -0.36 0.15 16 40 H 0.07 1.62 4.79 -51.93 -0.25 1.37 16 41 H 0.26 7.96 8.73 -40.82 -0.36 7.60 16 42 H 0.06 1.19 6.65 -51.93 -0.35 0.85 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 324.39 15.07 4.89 4.89 Total: -1.00 -28.02 324.39 -9.35 -37.37 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -7.91 Total: 7.63 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -1.67 Total: -17.29 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -0.18 Total: -53.84 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -4.48 Total: 21.23 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.02 -9.35 -37.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108086444.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.336 kcal (2) G-P(sol) polarization free energy of solvation -28.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds