Wall clock time and date at job start Mon Mar 30 2020 04:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46968 * 2 1 4 4 H 1.08998 * 109.52313 * 304.91896 * 3 2 1 5 5 C 1.53349 * 109.68529 * 184.74745 * 3 2 1 6 6 C 1.53036 * 109.60816 * 178.74812 * 5 3 2 7 7 H 1.08998 * 109.52468 * 181.34715 * 6 5 3 8 8 N 1.46905 * 109.49664 * 301.42376 * 6 5 3 9 9 C 1.46905 * 110.99762 * 204.83763 * 8 6 5 10 10 C 1.53001 * 109.46626 * 179.97438 * 9 8 6 11 11 C 1.52992 * 117.50068 * 243.61931 * 10 9 8 12 12 C 1.52992 * 60.00286 * 252.51699 * 11 10 9 13 13 C 1.53185 * 109.31431 * 61.37704 * 6 5 3 14 14 N 1.46932 * 108.77556 * 305.36283 * 13 6 5 15 15 C 1.36932 * 120.63150 * 233.63051 * 14 13 6 16 16 H 1.08006 * 119.99916 * 151.79740 * 15 14 13 17 17 C 1.38813 * 120.00181 * 331.79347 * 15 14 13 18 18 N 1.31618 * 120.00004 * 343.10205 * 17 15 14 19 19 Si 1.86806 * 119.99953 * 163.10095 * 17 15 14 20 20 H 1.48494 * 109.47083 * 60.00061 * 19 17 15 21 21 H 1.48500 * 109.46851 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47024 * 300.00112 * 19 17 15 23 23 C 1.46925 * 118.73484 * 53.60814 * 14 13 6 24 24 H 1.09005 * 109.46850 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47696 * 299.99923 * 1 2 3 26 26 H 1.09003 * 109.47341 * 60.00420 * 1 2 3 27 27 H 1.08994 * 109.47234 * 240.00083 * 2 1 3 28 28 H 1.09001 * 109.46753 * 120.00050 * 2 1 3 29 29 H 1.09000 * 109.41447 * 58.71103 * 5 3 2 30 30 H 1.09000 * 109.43582 * 298.79550 * 5 3 2 31 31 H 1.00904 * 110.99713 * 80.88739 * 8 6 5 32 32 H 1.08996 * 109.46738 * 299.99937 * 9 8 6 33 33 H 1.08992 * 109.46952 * 60.00156 * 9 8 6 34 34 H 1.08996 * 115.55173 * 29.33669 * 10 9 8 35 35 H 1.09001 * 117.49767 * 0.02562 * 11 10 9 36 36 H 1.08999 * 117.50282 * 145.02310 * 11 10 9 37 37 H 1.09003 * 117.49585 * 252.51065 * 12 11 10 38 38 H 1.09005 * 117.50358 * 107.49208 * 12 11 10 39 39 H 1.08995 * 109.59024 * 185.57791 * 13 6 5 40 40 H 1.08996 * 109.70464 * 65.22151 * 13 6 5 41 41 H 0.96996 * 119.99787 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.58869 * 66.17904 * 23 14 13 43 43 H 1.09004 * 109.58537 * 186.46092 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6069 1.9819 -0.8424 5 6 3.5688 1.4499 -0.1195 6 6 4.0745 2.8940 -0.1507 7 1 5.1590 2.8979 -0.2597 8 7 3.4652 3.6024 -1.2844 9 6 4.3050 4.7287 -1.7140 10 6 3.6395 5.4398 -2.8939 11 6 4.3775 5.4270 -4.2340 12 6 4.3027 6.7166 -3.4143 13 6 3.6894 3.5940 1.1563 14 7 2.2387 3.4668 1.3513 15 6 1.4640 4.5750 1.5680 16 1 0.4265 4.5758 1.2677 17 6 2.0121 5.6973 2.1738 18 7 3.1468 5.6010 2.8336 19 14 1.1391 7.3443 2.0524 20 1 -0.2124 7.2340 2.6576 21 1 1.9241 8.3753 2.7777 22 1 1.0119 7.7332 0.6248 23 6 1.6349 2.1280 1.3088 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8629 0.9422 -1.0381 30 1 4.0020 0.9319 0.7361 31 1 2.5323 3.9129 -1.0575 32 1 4.4241 5.4290 -0.8874 33 1 5.2831 4.3569 -2.0191 34 1 2.5508 5.3924 -2.9181 35 1 5.3371 4.9115 -4.2751 36 1 3.7745 5.3708 -5.1402 37 1 3.6503 7.5090 -3.7813 38 1 5.2131 7.0500 -2.9161 39 1 3.9593 4.6485 1.0993 40 1 4.2126 3.1276 1.9910 41 1 3.5300 6.3853 3.2566 42 1 1.9906 1.5397 2.1547 43 1 0.5494 2.2151 1.3550 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108086447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:22 Heat of formation + Delta-G solvation = 28.382355 kcal Electronic energy + Delta-G solvation = -19942.871066 eV Core-core repulsion = 17216.487513 eV Total energy + Delta-G solvation = -2726.383553 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.58686 -37.15077 -34.46735 -33.74749 -31.18075 -29.83486 -27.97228 -25.27499 -24.75642 -23.19966 -22.16108 -21.68558 -20.51226 -19.92814 -18.42874 -16.67717 -15.59811 -15.18245 -14.59043 -14.39898 -14.18507 -13.92984 -13.41434 -13.18581 -13.05206 -12.61373 -12.40168 -12.22743 -11.71416 -11.46575 -11.35690 -11.11099 -11.01294 -10.98516 -10.86924 -10.69668 -10.41400 -10.29459 -10.13561 -9.98937 -9.77562 -9.70852 -9.42121 -9.26232 -8.48153 -7.64150 -6.62165 -5.79237 -3.22883 3.36333 3.42365 3.43491 4.05371 4.47722 4.75577 5.10546 5.20084 5.26945 5.34962 5.44885 5.50571 5.52002 5.63328 5.75249 5.80443 5.91587 5.92916 5.98435 6.05283 6.08306 6.18662 6.23392 6.28673 6.36230 6.40913 6.47805 6.49642 6.52113 6.57933 6.65475 6.70432 6.90489 6.96883 7.15840 7.30364 7.57320 7.77712 7.87846 8.25246 8.43863 9.20176 9.84324 10.41478 11.27622 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.011718 B = 0.010373 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.917397 B = 2698.581940 C = 4313.134022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.102 4.102 4 H 0.073 0.927 5 C -0.089 4.089 6 C 0.059 3.941 7 H 0.058 0.942 8 N -0.677 5.677 9 C 0.091 3.909 10 C -0.136 4.136 11 C -0.179 4.179 12 C -0.186 4.186 13 C 0.144 3.856 14 N -0.589 5.589 15 C -0.253 4.253 16 H 0.065 0.935 17 C 0.004 3.996 18 N -0.901 5.901 19 Si 0.898 3.102 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.150 3.850 24 H 0.043 0.957 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.354 0.646 32 H 0.036 0.964 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.017 0.983 41 H 0.253 0.747 42 H 0.013 0.987 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.111 -5.025 -9.237 10.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.122 4.122 4 H 0.091 0.909 5 C -0.127 4.127 6 C -0.052 4.052 7 H 0.077 0.923 8 N -0.309 5.309 9 C -0.039 4.039 10 C -0.155 4.155 11 C -0.216 4.216 12 C -0.224 4.224 13 C 0.017 3.983 14 N -0.311 5.311 15 C -0.383 4.383 16 H 0.083 0.917 17 C -0.194 4.194 18 N -0.546 5.546 19 Si 0.728 3.272 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.210 1.210 23 C 0.024 3.976 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.175 0.825 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.035 0.965 41 H 0.063 0.937 42 H 0.031 0.969 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.440 -5.311 -9.586 11.053 hybrid contribution -0.495 1.594 0.800 1.851 sum 0.945 -3.717 -8.786 9.586 Atomic orbital electron populations 1.21786 0.96443 1.00483 1.02059 1.21508 0.95459 0.97442 1.00867 1.21674 0.95515 0.94518 1.00512 0.90887 1.21436 0.95715 0.95798 0.99781 1.22161 0.96669 0.94223 0.92194 0.92336 1.60763 1.06662 1.26234 1.37287 1.21432 0.95811 0.92112 0.94550 1.22254 0.99226 0.99272 0.94738 1.22945 1.02184 1.01212 0.95219 1.22936 1.03113 0.91604 1.04701 1.21398 0.84432 1.00760 0.91699 1.44000 1.03277 1.01006 1.82823 1.19144 0.94850 0.91415 1.32892 0.91717 1.25028 0.97913 0.99294 0.97208 1.70027 1.20717 1.28641 1.35192 0.86435 0.79000 0.84023 0.77760 1.20894 1.21725 1.20950 1.21024 0.96626 0.86866 0.93125 0.93751 0.92375 0.93013 0.92892 0.92696 0.93221 0.93056 0.82536 0.94594 0.92166 0.87794 0.89146 0.89412 0.89198 0.89069 0.89547 0.96472 0.93675 0.96869 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.67 37.16 0.36 -1.66 16 2 C -0.11 -1.66 5.42 -26.73 -0.14 -1.81 16 3 C -0.10 -1.77 2.09 -90.34 -0.19 -1.96 16 4 H 0.07 1.36 7.13 -51.93 -0.37 0.99 16 5 C -0.09 -1.55 4.91 -26.53 -0.13 -1.68 16 6 C 0.06 1.14 2.87 -67.60 -0.19 0.94 16 7 H 0.06 1.08 7.80 -51.93 -0.41 0.67 16 8 N -0.68 -12.58 5.73 -106.60 -0.61 -13.19 16 9 C 0.09 1.57 5.77 -3.82 -0.02 1.55 16 10 C -0.14 -2.11 5.95 -90.62 -0.54 -2.65 16 11 C -0.18 -2.31 10.18 -26.74 -0.27 -2.58 16 12 C -0.19 -2.51 10.25 -26.74 -0.27 -2.79 16 13 C 0.14 3.38 4.78 -3.71 -0.02 3.36 16 14 N -0.59 -14.27 2.27 -172.32 -0.39 -14.66 16 15 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 16 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 17 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 18 N -0.90 -25.90 11.20 55.49 0.62 -25.28 16 19 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 23 C 0.15 3.11 5.40 -3.71 -0.02 3.09 16 24 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.82 6.69 -51.93 -0.35 0.48 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.35 7.34 7.06 -39.29 -0.28 7.06 16 32 H 0.04 0.71 7.37 -51.93 -0.38 0.33 16 33 H 0.06 0.98 7.79 -51.93 -0.40 0.57 16 34 H 0.10 1.68 8.13 -51.93 -0.42 1.26 16 35 H 0.09 1.12 8.03 -51.93 -0.42 0.70 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.09 2.27 5.28 -51.93 -0.27 2.00 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.05 1.08 6.64 -51.93 -0.34 0.74 16 LS Contribution 329.55 15.07 4.97 4.97 Total: -1.00 -27.39 329.55 -9.96 -37.35 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.84 Total: 7.32 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -1.67 Total: -13.06 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.38 Total: -53.13 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.39 -9.96 -37.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108086447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.736 kcal (2) G-P(sol) polarization free energy of solvation -27.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds