Wall clock time and date at job start Mon Mar 30 2020 04:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47127 * 2 1 4 4 H 1.09003 * 109.53925 * 54.89752 * 3 2 1 5 5 C 1.53034 * 109.50446 * 294.79662 * 3 2 1 6 6 N 1.46845 * 109.52623 * 180.87862 * 5 3 2 7 7 C 1.46897 * 111.00049 * 185.83998 * 6 5 3 8 8 C 1.53004 * 109.47415 * 182.37779 * 7 6 5 9 9 C 1.50698 * 115.54754 * 305.98673 * 8 7 6 10 10 H 1.08005 * 120.00114 * 144.28142 * 9 8 7 11 11 C 1.37876 * 120.00263 * 324.27547 * 9 8 7 12 12 N 1.31515 * 119.99719 * 351.50951 * 11 9 8 13 13 Si 1.86800 * 120.00512 * 171.51202 * 11 9 8 14 14 H 1.48500 * 109.47078 * 64.99787 * 13 11 9 15 15 H 1.48499 * 109.47252 * 184.99851 * 13 11 9 16 16 H 1.48503 * 109.46974 * 305.00331 * 13 11 9 17 17 C 1.52992 * 117.50369 * 160.31076 * 8 7 6 18 18 C 1.53001 * 117.49921 * 91.64865 * 8 7 6 19 19 C 1.46846 * 111.19481 * 61.74602 * 6 5 3 20 20 C 1.53043 * 109.57551 * 298.28709 * 19 6 5 21 21 C 1.53117 * 109.27457 * 59.08434 * 20 19 6 22 22 H 1.09002 * 109.52475 * 182.50461 * 21 20 19 23 23 N 1.46902 * 109.52038 * 62.37895 * 21 20 19 24 24 H 1.08996 * 109.47138 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47389 * 300.00511 * 1 2 3 26 26 H 1.09007 * 109.46421 * 60.00643 * 1 2 3 27 27 H 1.08992 * 109.47389 * 239.99488 * 2 1 3 28 28 H 1.09007 * 109.46421 * 119.99357 * 2 1 3 29 29 H 1.08996 * 109.46536 * 300.90098 * 5 3 2 30 30 H 1.09003 * 109.46272 * 60.86819 * 5 3 2 31 31 H 1.09001 * 109.47573 * 302.37908 * 7 6 5 32 32 H 1.09002 * 109.47587 * 62.38405 * 7 6 5 33 33 H 0.96999 * 119.99995 * 185.00352 * 12 11 9 34 34 H 1.09011 * 117.49776 * 0.02562 * 17 8 7 35 35 H 1.08996 * 117.50184 * 145.02221 * 17 8 7 36 36 H 1.08993 * 117.50223 * 214.98312 * 18 8 7 37 37 H 1.09006 * 117.49474 * 0.02562 * 18 8 7 38 38 H 1.08996 * 109.46333 * 58.27661 * 19 6 5 39 39 H 1.09003 * 109.46213 * 178.25440 * 19 6 5 40 40 H 1.09000 * 109.45554 * 299.18022 * 20 19 6 41 41 H 1.08996 * 109.56105 * 179.05767 * 20 19 6 42 42 H 1.00901 * 111.00359 * 60.12705 * 23 21 20 43 43 H 1.00907 * 110.99951 * 184.08278 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6046 1.9831 0.8404 5 6 1.6399 2.1258 -1.3095 6 7 2.1473 3.5038 -1.3190 7 6 1.6651 4.2342 -2.4988 8 6 2.2608 5.6436 -2.5048 9 6 2.0410 6.4474 -1.2492 10 1 2.8086 7.1211 -0.8980 11 6 0.8599 6.3229 -0.5488 12 7 -0.1380 5.6351 -1.0594 13 14 0.6771 7.1311 1.1254 14 1 0.7399 8.6068 0.9721 15 1 -0.6298 6.7502 1.7188 16 1 1.7759 6.6788 2.0160 17 6 2.2729 6.3998 -3.8347 18 6 3.5785 5.8504 -3.2543 19 6 3.6137 3.5301 -1.2468 20 6 4.0742 2.8882 0.0640 21 6 3.5660 1.4452 0.1259 22 1 3.8538 0.9981 1.0775 23 7 4.1510 0.6710 -0.9770 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 2.0642 1.5768 -2.1501 30 1 0.5534 2.1384 -1.3954 31 1 1.9705 3.7069 -3.4025 32 1 0.5776 4.2998 -2.4662 33 1 -0.9926 5.6076 -0.6014 34 1 1.8561 5.8934 -4.7054 35 1 2.1223 7.4788 -3.8015 36 1 4.2862 6.5681 -2.8396 37 1 4.0208 4.9825 -3.7435 38 1 4.0288 2.9746 -2.0877 39 1 3.9608 4.5626 -1.2869 40 1 3.6717 3.4521 0.9055 41 1 5.1632 2.8928 0.1098 42 1 5.1581 0.6599 -0.9167 43 1 3.7796 -0.2670 -0.9972 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122757215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:00 Heat of formation + Delta-G solvation = 6.391278 kcal Electronic energy + Delta-G solvation = -20440.853165 eV Core-core repulsion = 17713.516007 eV Total energy + Delta-G solvation = -2727.337157 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.50064 -38.44310 -35.28995 -34.43991 -33.97496 -30.92218 -29.56184 -27.58397 -26.71061 -25.02792 -23.21121 -22.91107 -21.83333 -20.59873 -19.72917 -17.99550 -16.93591 -16.61019 -16.50879 -16.00806 -15.74381 -15.22747 -15.13157 -14.64488 -14.34939 -14.12981 -13.71072 -13.55048 -13.27599 -13.08453 -12.79641 -12.69237 -12.59761 -12.41847 -12.25642 -12.03861 -11.86753 -11.78441 -11.48352 -11.35546 -10.97781 -10.93807 -10.80594 -10.35202 -9.85457 -9.46661 -8.53870 -7.83866 -5.94699 1.45907 1.49139 1.54647 2.53243 3.15151 3.45228 3.73929 3.77502 3.88068 3.99550 4.12776 4.33810 4.38778 4.47614 4.57492 4.60552 4.63041 4.68931 4.80143 4.87826 4.91396 4.93560 4.97523 5.01489 5.05201 5.12279 5.16963 5.22746 5.27238 5.33940 5.43122 5.48478 5.54066 5.58004 5.62155 5.73881 6.13288 6.37514 6.49865 6.75411 6.78873 6.86923 7.05362 7.66455 9.13699 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018462 B = 0.008807 C = 0.007504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.276427 B = 3178.417338 C = 3730.210857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.108 4.108 3 C -0.074 4.074 4 H 0.054 0.946 5 C 0.082 3.918 6 N -0.515 5.515 7 C 0.120 3.880 8 C 0.042 3.958 9 C -0.494 4.494 10 H 0.040 0.960 11 C 0.056 3.944 12 N -0.886 5.886 13 Si 0.938 3.062 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.277 1.277 17 C -0.211 4.211 18 C -0.194 4.194 19 C 0.077 3.923 20 C -0.106 4.106 21 C 0.106 3.894 22 H 0.044 0.956 23 N -0.845 5.845 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.025 0.975 30 H 0.044 0.956 31 H -0.022 1.022 32 H 0.084 0.916 33 H 0.254 0.746 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.021 0.979 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.073 0.927 42 H 0.346 0.654 43 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.460 -12.261 2.429 13.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C -0.093 4.093 4 H 0.072 0.928 5 C -0.046 4.046 6 N -0.239 5.239 7 C -0.008 4.008 8 C 0.042 3.958 9 C -0.531 4.531 10 H 0.058 0.942 11 C -0.146 4.146 12 N -0.523 5.523 13 Si 0.765 3.235 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.249 4.249 18 C -0.231 4.231 19 C -0.051 4.051 20 C -0.145 4.145 21 C -0.006 4.006 22 H 0.062 0.938 23 N -0.379 5.379 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.062 0.938 31 H -0.004 1.004 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.039 0.961 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.160 0.840 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.757 -11.598 2.456 12.774 hybrid contribution 0.327 -0.046 0.638 0.719 sum 5.085 -11.644 3.094 13.077 Atomic orbital electron populations 1.21776 0.95988 1.01823 1.01250 1.21479 0.95985 0.94768 1.02401 1.21186 0.94779 0.96235 0.97127 0.92782 1.21833 0.97783 0.88419 0.96603 1.61596 1.08757 1.12526 1.40974 1.21414 1.01344 0.91128 0.86920 1.19025 0.93516 0.93095 0.90197 1.20372 1.01469 1.23589 1.07698 0.94217 1.25237 0.95640 0.94669 0.99040 1.69907 1.01997 1.40963 1.39454 0.85958 0.76906 0.78391 0.82205 1.20665 1.21325 1.20230 1.22999 1.02647 0.99283 1.00018 1.22889 0.91293 1.02071 1.06858 1.21792 0.88085 0.99218 0.96050 1.21585 0.99928 0.95291 0.97667 1.21211 0.93732 0.93434 0.92177 0.93814 1.58625 1.11279 1.19659 1.48337 0.91198 0.93578 0.93887 0.90949 0.90815 0.95647 0.93783 1.00416 0.89779 0.93606 0.91046 0.91190 0.90731 0.90496 0.96085 0.92359 0.93104 0.90853 0.84038 0.83859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.67 71.98 0.70 -2.95 16 2 C -0.11 -2.51 4.86 30.59 0.15 -2.36 16 3 C -0.07 -2.27 2.18 -10.74 -0.02 -2.29 16 4 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 5 C 0.08 3.10 4.34 86.32 0.37 3.47 16 6 N -0.52 -22.82 4.34 -896.36 -3.89 -26.71 16 7 C 0.12 5.87 4.17 86.31 0.36 6.23 16 8 C 0.04 2.13 1.08 -52.93 -0.06 2.07 16 9 C -0.49 -27.22 8.31 25.60 0.21 -27.01 16 10 H 0.04 2.22 7.83 -2.91 -0.02 2.20 16 11 C 0.06 3.07 5.19 84.65 0.44 3.50 16 12 N -0.89 -49.65 10.69 21.45 0.23 -49.42 16 13 Si 0.94 44.38 29.55 68.60 2.03 46.40 16 14 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 15 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 17 C -0.21 -9.85 9.96 30.62 0.30 -9.55 16 18 C -0.19 -8.55 8.16 30.62 0.25 -8.30 16 19 C 0.08 3.06 4.66 86.33 0.40 3.47 16 20 C -0.11 -3.50 5.77 30.65 0.18 -3.32 16 21 C 0.11 2.87 3.14 44.99 0.14 3.01 16 22 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 23 N -0.85 -19.40 7.90 -168.34 -1.33 -20.73 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.04 1.18 6.59 -2.38 -0.02 1.17 16 27 H 0.07 1.55 6.83 -2.39 -0.02 1.53 16 28 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.03 0.96 7.69 -2.39 -0.02 0.94 16 30 H 0.04 1.81 6.60 -2.39 -0.02 1.79 16 31 H -0.02 -1.06 8.09 -2.39 -0.02 -1.08 16 32 H 0.08 4.62 5.99 -2.39 -0.01 4.61 16 33 H 0.25 13.84 8.32 -92.71 -0.77 13.07 16 34 H 0.07 3.14 8.14 -2.38 -0.02 3.12 16 35 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 36 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 37 H 0.08 3.16 8.14 -2.38 -0.02 3.14 16 38 H 0.02 0.84 7.69 -2.39 -0.02 0.82 16 39 H 0.06 2.62 5.36 -2.39 -0.01 2.60 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.35 6.69 9.04 -89.69 -0.81 5.88 16 43 H 0.35 6.61 7.09 -89.69 -0.64 5.98 16 Total: -1.00 -58.87 321.94 0.00 -58.87 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: -0.46 Total: 25.62 kcal Atomic # 6 Polarization: -37.46 SS G_CDS: 3.43 Total: -34.04 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -4.99 Total: -96.86 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -58.87 0.00 -58.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122757215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.262 kcal (2) G-P(sol) polarization free energy of solvation -58.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds