Wall clock time and date at job start Mon Mar 30 2020 04:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52999 * 109.47057 * 2 1 4 4 H 1.09001 * 109.47363 * 54.59199 * 3 2 1 5 5 C 1.50694 * 109.47323 * 174.59338 * 3 2 1 6 6 H 1.07998 * 120.00219 * 115.06771 * 5 3 2 7 7 C 1.37875 * 119.99809 * 295.07317 * 5 3 2 8 8 N 1.31525 * 120.00137 * 165.60853 * 7 5 3 9 9 Si 1.86796 * 120.00191 * 345.60948 * 7 5 3 10 10 H 1.48495 * 109.47262 * 272.88489 * 9 7 5 11 11 H 1.48507 * 109.47081 * 32.88669 * 9 7 5 12 12 H 1.48507 * 109.47388 * 152.88356 * 9 7 5 13 13 N 1.46908 * 109.46711 * 294.59203 * 3 2 1 14 14 C 1.46899 * 110.99721 * 158.83301 * 13 3 2 15 15 H 1.08998 * 109.24571 * 38.09380 * 14 13 3 16 16 C 1.52818 * 109.25292 * 278.62981 * 14 13 3 17 17 C 1.53627 * 110.65391 * 185.84658 * 16 14 13 18 18 N 1.45533 * 107.86316 * 57.12847 * 17 16 14 19 19 C 1.46335 * 117.21471 * 174.46697 * 18 17 16 20 20 C 1.54797 * 105.96357 * 151.91969 * 19 18 17 21 21 C 1.55325 * 104.99267 * 356.35845 * 20 19 18 22 22 C 1.48662 * 109.70666 * 294.68563 * 18 17 16 23 23 H 1.08993 * 111.11095 * 307.46524 * 22 18 17 24 24 C 1.52365 * 107.34934 * 69.54749 * 22 18 17 25 25 H 1.09002 * 109.46827 * 65.02036 * 1 2 3 26 26 H 1.08997 * 109.46577 * 185.01420 * 1 2 3 27 27 H 1.08995 * 109.47037 * 305.01397 * 1 2 3 28 28 H 1.08999 * 109.47222 * 239.99551 * 2 1 3 29 29 H 1.09000 * 109.46630 * 119.99431 * 2 1 3 30 30 H 0.96998 * 120.00195 * 180.02562 * 8 7 5 31 31 H 1.00899 * 110.99755 * 282.78964 * 13 3 2 32 32 H 1.09001 * 109.24130 * 306.15316 * 16 14 13 33 33 H 1.09005 * 109.24011 * 65.58509 * 16 14 13 34 34 H 1.09000 * 109.78776 * 176.72447 * 17 16 14 35 35 H 1.09004 * 109.78442 * 297.54080 * 17 16 14 36 36 H 1.09000 * 110.15552 * 271.04391 * 19 18 17 37 37 H 1.08999 * 110.15323 * 32.79883 * 19 18 17 38 38 H 1.09005 * 110.34211 * 237.48039 * 20 19 18 39 39 H 1.09005 * 110.33841 * 115.23749 * 20 19 18 40 40 H 1.09004 * 110.91302 * 219.60844 * 21 20 19 41 41 H 1.09005 * 110.91299 * 95.99643 * 21 20 19 42 42 H 1.08996 * 109.83833 * 177.63955 * 24 22 18 43 43 H 1.09005 * 109.83507 * 56.68082 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5998 1.9836 0.8376 5 6 3.5411 1.4447 0.1339 6 1 4.1548 1.8149 -0.6740 7 6 4.1309 0.9739 1.2877 8 7 5.4190 0.7086 1.3068 9 14 3.1007 0.7128 2.8239 10 1 3.0350 1.9789 3.5970 11 1 1.7287 0.2982 2.4352 12 1 3.7194 -0.3466 3.6607 13 7 1.6598 2.0962 -1.2595 14 6 1.6682 3.5583 -1.1171 15 1 2.5061 3.8529 -0.4853 16 6 0.3620 4.0084 -0.4639 17 6 0.2728 5.5418 -0.4312 18 7 0.3946 6.0253 -1.7984 19 6 0.2122 7.4603 -2.0195 20 6 1.0530 7.8084 -3.2717 21 6 1.7734 6.4860 -3.6524 22 6 1.7502 5.7120 -2.3221 23 1 2.5253 6.0734 -1.6464 24 6 1.8294 4.2012 -2.5032 25 1 -0.3633 0.4340 -0.9316 26 1 -0.3632 -1.0237 0.0898 27 1 -0.3633 0.5896 0.8416 28 1 1.8935 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 5.8339 0.3770 2.1185 31 1 2.2610 1.8030 -2.0149 32 1 -0.4792 3.6117 -1.0323 33 1 0.3194 3.6249 0.5555 34 1 -0.6878 5.8468 -0.0162 35 1 1.0828 5.9456 0.1764 36 1 -0.8397 7.6817 -2.2001 37 1 0.5722 8.0219 -1.1575 38 1 1.7828 8.5827 -3.0348 39 1 0.4045 8.1342 -4.0850 40 1 2.7975 6.6789 -3.9723 41 1 1.2207 5.9500 -4.4240 42 1 2.7963 3.9295 -2.9266 43 1 1.0286 3.8652 -3.1620 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156084374.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:46 Heat of formation + Delta-G solvation = -5.519481 kcal Electronic energy + Delta-G solvation = -19820.894424 eV Core-core repulsion = 17093.040777 eV Total energy + Delta-G solvation = -2727.853647 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.77535 -36.75016 -34.17950 -32.39041 -31.87876 -30.33621 -28.55174 -27.17251 -25.57951 -22.74284 -22.47421 -21.01836 -20.60103 -19.41593 -19.32453 -16.94132 -15.75193 -15.55790 -14.90830 -14.81066 -14.53115 -13.85853 -13.59971 -13.34498 -12.77350 -12.67336 -12.51259 -12.31577 -12.08362 -11.78167 -11.45734 -11.43205 -11.23004 -10.98594 -10.90250 -10.74327 -10.60224 -10.52342 -10.45722 -9.97294 -9.79902 -9.68146 -9.47563 -9.11995 -8.46070 -8.17628 -7.26584 -6.13750 -4.09775 3.26905 3.36393 3.40110 4.07883 4.40264 4.58652 4.75863 4.95483 5.04193 5.19322 5.27592 5.32611 5.42968 5.56405 5.64013 5.67830 5.73836 5.85025 5.88597 5.97632 6.06580 6.12007 6.15666 6.18488 6.21615 6.26219 6.34226 6.41186 6.50156 6.66844 6.78042 6.84497 6.90310 7.09863 7.15512 7.26844 7.40114 7.42388 7.64026 8.12815 8.44374 8.54686 8.92966 9.53675 10.99401 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.027402 B = 0.005908 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.575009 B = 4737.983392 C = 4955.578459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 C 0.188 3.812 4 H 0.027 0.973 5 C -0.549 4.549 6 H 0.069 0.931 7 C 0.077 3.923 8 N -0.894 5.894 9 Si 0.861 3.139 10 H -0.281 1.281 11 H -0.247 1.247 12 H -0.289 1.289 13 N -0.677 5.677 14 C 0.092 3.908 15 H 0.045 0.955 16 C -0.099 4.099 17 C 0.062 3.938 18 N -0.535 5.535 19 C 0.049 3.951 20 C -0.128 4.128 21 C -0.115 4.115 22 C 0.069 3.931 23 H 0.052 0.948 24 C -0.101 4.101 25 H 0.058 0.942 26 H 0.029 0.971 27 H 0.037 0.963 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.263 0.737 31 H 0.333 0.667 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.030 0.970 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.784 10.709 -6.502 15.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 C 0.078 3.922 4 H 0.045 0.955 5 C -0.587 4.587 6 H 0.087 0.913 7 C -0.126 4.126 8 N -0.531 5.531 9 Si 0.688 3.312 10 H -0.207 1.207 11 H -0.171 1.171 12 H -0.215 1.215 13 N -0.306 5.306 14 C -0.018 4.018 15 H 0.063 0.937 16 C -0.137 4.137 17 C -0.067 4.067 18 N -0.261 5.261 19 C -0.079 4.079 20 C -0.166 4.166 21 C -0.154 4.154 22 C -0.039 4.039 23 H 0.070 0.930 24 C -0.139 4.139 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.150 0.850 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.718 10.322 -6.491 16.234 hybrid contribution 1.298 0.486 1.637 2.145 sum -9.420 10.808 -4.854 15.137 Atomic orbital electron populations 1.21715 0.97956 0.98836 1.01237 1.21851 0.93363 0.99132 1.00692 1.19492 0.93858 0.90685 0.88146 0.95491 1.21721 0.90781 1.43204 1.03030 0.91262 1.24956 0.94674 0.94043 0.98891 1.69995 1.11139 1.43800 1.28137 0.87264 0.82391 0.78018 0.83505 1.20746 1.17058 1.21513 1.60806 1.57530 1.04200 1.08042 1.21357 0.96162 0.89477 0.94816 0.93737 1.21563 0.99043 0.92349 1.00792 1.21969 1.00123 0.96610 0.87961 1.62789 1.27963 1.14473 1.20845 1.22478 1.00177 0.88495 0.96758 1.22621 0.98695 0.97720 0.97536 1.22374 1.00210 0.95460 0.97315 1.22556 0.89698 0.96263 0.95382 0.92993 1.21632 1.01696 0.92590 0.98027 0.92311 0.95161 0.94386 0.93016 0.92930 0.92763 0.84985 0.90992 0.92074 0.91282 0.95227 0.90850 0.94786 0.91796 0.91241 0.91296 0.90573 0.91902 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.75 37.16 0.36 -2.25 16 2 C -0.11 -2.45 4.90 -26.73 -0.13 -2.58 16 3 C 0.19 4.31 1.36 -68.86 -0.09 4.21 16 4 H 0.03 0.65 5.65 -51.93 -0.29 0.36 16 5 C -0.55 -14.97 8.51 -34.44 -0.29 -15.26 16 6 H 0.07 2.06 8.01 -52.49 -0.42 1.64 16 7 C 0.08 2.20 5.34 -17.82 -0.10 2.10 16 8 N -0.89 -27.06 13.96 55.43 0.77 -26.28 16 9 Si 0.86 21.14 25.82 -169.99 -4.39 16.75 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.25 -5.70 5.42 56.52 0.31 -5.39 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 N -0.68 -13.45 5.59 -100.70 -0.56 -14.01 16 14 C 0.09 1.68 2.39 -67.47 -0.16 1.52 16 15 H 0.04 0.95 7.49 -51.93 -0.39 0.56 16 16 C -0.10 -1.64 5.46 -26.50 -0.14 -1.79 16 17 C 0.06 0.89 5.85 -4.24 -0.02 0.87 16 18 N -0.54 -7.35 4.65 -225.07 -1.05 -8.40 16 19 C 0.05 0.56 6.86 -3.18 -0.02 0.54 16 20 C -0.13 -1.28 6.98 -24.55 -0.17 -1.45 16 21 C -0.12 -1.30 6.61 -25.02 -0.17 -1.47 16 22 C 0.07 0.96 2.63 -66.58 -0.17 0.79 16 23 H 0.05 0.78 8.06 -51.93 -0.42 0.36 16 24 C -0.10 -1.56 4.95 -26.72 -0.13 -1.69 16 25 H 0.06 1.06 7.91 -51.93 -0.41 0.64 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.05 1.22 4.80 -51.93 -0.25 0.97 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.33 6.69 8.15 -39.29 -0.32 6.37 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.08 7.20 -51.93 -0.37 0.70 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.03 0.45 8.05 -51.93 -0.42 0.03 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.38 8.04 -51.93 -0.42 -0.04 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.86 8.10 -51.93 -0.42 0.43 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 320.58 15.07 4.83 4.83 Total: -1.00 -28.72 320.58 -9.65 -38.37 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -8.01 Total: 5.19 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -1.25 Total: -16.45 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -0.84 Total: -48.69 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.39 Total: 16.75 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.72 -9.65 -38.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156084374.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.854 kcal (2) G-P(sol) polarization free energy of solvation -28.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds