Wall clock time and date at job start Mon Mar 30 2020 04:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46988 * 2 1 4 4 H 1.08999 * 109.47077 * 178.38731 * 3 2 1 5 5 C 1.50699 * 109.46989 * 58.38634 * 3 2 1 6 6 H 1.08000 * 119.99762 * 239.99620 * 5 3 2 7 7 C 1.37877 * 120.00200 * 60.00088 * 5 3 2 8 8 N 1.31516 * 119.99796 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00044 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47146 * 89.99937 * 9 7 5 11 11 H 1.48498 * 109.47134 * 209.99523 * 9 7 5 12 12 H 1.48503 * 109.47218 * 329.99854 * 9 7 5 13 13 N 1.46899 * 109.47389 * 298.38338 * 3 2 1 14 14 C 1.48925 * 111.00142 * 297.29195 * 13 3 2 15 15 C 1.54790 * 103.81059 * 200.10742 * 14 13 3 16 16 H 1.09000 * 105.48575 * 272.17473 * 15 14 13 17 17 C 1.49125 * 110.92198 * 156.89061 * 15 14 13 18 18 C 1.51051 * 117.53046 * 239.74332 * 17 15 14 19 19 C 1.52838 * 110.74552 * 326.59993 * 18 17 15 20 20 C 1.52824 * 107.47034 * 63.84661 * 19 18 17 21 21 H 1.09004 * 109.18056 * 174.69778 * 20 19 18 22 22 N 1.46905 * 109.21828 * 55.34053 * 20 19 18 23 23 C 1.51060 * 110.76838 * 295.00593 * 20 19 18 24 24 H 1.08999 * 108.52749 * 273.23823 * 23 20 19 25 25 C 1.48907 * 111.00210 * 182.65012 * 13 3 2 26 26 H 1.09005 * 109.47606 * 174.72786 * 1 2 3 27 27 H 1.09008 * 109.47008 * 294.72263 * 1 2 3 28 28 H 1.09001 * 109.47584 * 54.72255 * 1 2 3 29 29 H 1.08997 * 109.46970 * 120.00329 * 2 1 3 30 30 H 1.09001 * 109.46787 * 240.00119 * 2 1 3 31 31 H 0.97001 * 119.99719 * 180.02562 * 8 7 5 32 32 H 1.08993 * 110.55717 * 318.69607 * 14 13 3 33 33 H 1.09005 * 110.55532 * 81.52693 * 14 13 3 34 34 H 1.09002 * 107.83676 * 117.70873 * 17 15 14 35 35 H 1.09005 * 107.80433 * 1.75606 * 17 15 14 36 36 H 1.08999 * 109.22583 * 206.26993 * 18 17 15 37 37 H 1.09000 * 109.18284 * 86.90049 * 18 17 15 38 38 H 1.09002 * 109.85699 * 304.35425 * 19 18 17 39 39 H 1.09006 * 109.85376 * 183.34077 * 19 18 17 40 40 H 1.00894 * 111.00282 * 292.14150 * 22 20 19 41 41 H 1.00904 * 110.99536 * 56.09260 * 22 20 19 42 42 H 1.09004 * 110.54998 * 278.39212 * 25 13 3 43 43 H 1.09001 * 110.54912 * 41.19797 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4426 0.0289 5 6 1.5052 2.1643 1.2100 6 1 0.8873 3.0413 1.0862 7 6 1.8048 1.7051 2.4750 8 7 2.5570 0.6368 2.6257 9 14 1.1426 2.6002 3.9748 10 1 -0.1761 2.0294 4.3497 11 1 2.0911 2.4396 5.1060 12 1 0.9862 4.0433 3.6610 13 7 1.5825 2.1236 -1.2185 14 6 2.1455 1.4758 -2.4355 15 6 2.0190 2.5664 -3.5267 16 1 1.0250 2.4358 -3.9547 17 6 2.9967 2.3334 -4.6283 18 6 4.0073 3.4211 -4.9064 19 6 3.4058 4.8003 -4.6383 20 6 3.0791 4.8764 -3.1473 21 1 2.7355 5.8825 -2.9068 22 7 4.2908 4.5809 -2.3711 23 6 2.0010 3.8827 -2.7838 24 1 1.0299 4.3488 -2.9505 25 6 2.1134 3.5133 -1.2844 26 1 -0.3634 -1.0233 -0.0944 27 1 -0.3633 0.4298 0.9335 28 1 -0.3634 0.5935 -0.8389 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.7675 0.3135 3.5157 32 1 3.1910 1.2104 -2.2789 33 1 1.5623 0.5952 -2.7049 34 1 2.4324 2.1600 -5.5445 35 1 3.5447 1.4192 -4.3998 36 1 4.3200 3.3625 -5.9490 37 1 4.8751 3.2768 -4.2629 38 1 2.4953 4.9274 -5.2238 39 1 4.1263 5.5756 -4.8996 40 1 4.5659 3.6167 -2.4832 41 1 5.0434 5.2034 -2.6246 42 1 1.5049 4.1845 -0.6783 43 1 3.1538 3.5411 -0.9604 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164405253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:37 Heat of formation + Delta-G solvation = 0.067688 kcal Electronic energy + Delta-G solvation = -20344.222182 eV Core-core repulsion = 17616.610813 eV Total energy + Delta-G solvation = -2727.611369 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.05114 -36.56824 -33.82743 -33.13074 -31.28024 -29.42517 -28.84523 -26.71329 -25.86129 -23.52952 -22.20696 -21.40898 -20.72482 -18.81080 -17.37177 -16.86321 -15.82079 -15.38765 -15.01038 -14.46398 -14.32466 -13.88344 -13.53202 -13.34926 -12.96438 -12.58756 -12.34662 -12.03423 -11.90986 -11.77135 -11.27274 -11.17019 -10.95582 -10.84715 -10.75757 -10.49950 -10.32813 -10.03222 -9.87657 -9.82270 -9.60506 -9.53638 -9.25717 -8.70922 -8.41080 -8.29887 -7.11973 -5.91350 -3.93392 3.36715 3.42977 3.47057 4.49353 4.64720 4.74081 4.79854 4.93439 5.11296 5.18720 5.32572 5.40387 5.52730 5.60557 5.68210 5.73623 5.85603 6.00280 6.06702 6.12392 6.12974 6.28451 6.38123 6.43170 6.52371 6.66370 6.67851 6.71025 6.85014 6.94691 7.09575 7.20726 7.32478 7.40561 7.52199 7.66019 7.71544 7.79677 7.93558 8.22159 8.44468 8.67466 9.11933 9.69965 11.15580 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.028482 B = 0.006707 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.839214 B = 4173.503501 C = 4705.135196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.109 4.109 3 C 0.208 3.792 4 H -0.002 1.002 5 C -0.490 4.490 6 H 0.059 0.941 7 C 0.059 3.941 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.504 5.504 14 C 0.037 3.963 15 C -0.084 4.084 16 H 0.058 0.942 17 C -0.105 4.105 18 C -0.117 4.117 19 C -0.151 4.151 20 C 0.103 3.897 21 H 0.076 0.924 22 N -0.834 5.834 23 C -0.081 4.081 24 H 0.065 0.935 25 C 0.055 3.945 26 H 0.012 0.988 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.010 0.990 31 H 0.258 0.742 32 H 0.030 0.970 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.342 0.658 41 H 0.330 0.670 42 H 0.067 0.933 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.352 5.039 -13.828 14.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.147 4.147 3 C 0.102 3.898 4 H 0.016 0.984 5 C -0.528 4.528 6 H 0.078 0.922 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.228 5.228 14 C -0.092 4.092 15 C -0.103 4.103 16 H 0.077 0.923 17 C -0.143 4.143 18 C -0.154 4.154 19 C -0.191 4.191 20 C -0.009 4.009 21 H 0.094 0.906 22 N -0.365 5.365 23 C -0.101 4.101 24 H 0.083 0.917 25 C -0.074 4.074 26 H 0.032 0.968 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.029 0.971 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.157 0.843 41 H 0.143 0.857 42 H 0.086 0.914 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.371 5.064 -12.985 14.005 hybrid contribution 0.922 0.094 -0.081 0.930 sum 2.293 5.159 -13.066 14.233 Atomic orbital electron populations 1.21453 0.97387 0.97068 1.01793 1.21515 0.95183 0.98314 0.99694 1.19393 0.93070 0.91052 0.86308 0.98411 1.21029 1.30574 1.11595 0.89649 0.92247 1.24884 0.95348 0.95142 0.98783 1.69887 1.37887 1.23352 1.22335 0.86598 0.78602 0.80184 0.82632 1.20829 1.21472 1.19981 1.65818 1.53218 1.01675 1.02137 1.23410 0.97379 0.96452 0.91963 1.20420 0.99021 0.95658 0.95212 0.92321 1.20314 0.97145 0.98743 0.98092 1.21108 0.98420 0.95065 1.00838 1.22232 1.01095 0.96776 0.98952 1.20912 0.91392 0.99026 0.89591 0.90569 1.59138 1.07261 1.09031 1.61048 1.20940 0.97611 0.93990 0.97517 0.91672 1.23144 1.00444 0.91558 0.92228 0.96839 0.92677 0.93594 0.89328 0.97136 0.93188 0.95149 0.91520 0.92943 0.92251 0.92297 0.92477 0.91484 0.92263 0.84321 0.85734 0.91418 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 9.46 37.16 0.35 -2.38 16 2 C -0.11 -2.66 5.29 -26.73 -0.14 -2.80 16 3 C 0.21 5.26 1.54 -68.87 -0.11 5.15 16 4 H 0.00 -0.05 7.99 -51.93 -0.41 -0.46 16 5 C -0.49 -13.43 6.89 -34.44 -0.24 -13.67 16 6 H 0.06 1.66 7.12 -52.49 -0.37 1.29 16 7 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 8 N -0.89 -25.71 11.33 55.43 0.63 -25.08 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.50 -10.83 4.43 -222.22 -0.99 -11.82 16 14 C 0.04 0.67 4.67 -1.76 -0.01 0.66 16 15 C -0.08 -1.24 2.80 -92.51 -0.26 -1.50 16 16 H 0.06 0.88 8.06 -51.93 -0.42 0.46 16 17 C -0.10 -1.28 5.51 -29.62 -0.16 -1.44 16 18 C -0.12 -1.23 5.57 -27.79 -0.15 -1.39 16 19 C -0.15 -1.59 5.67 -26.90 -0.15 -1.74 16 20 C 0.10 1.32 3.35 -68.78 -0.23 1.09 16 21 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 22 N -0.83 -11.07 7.01 -5.58 -0.04 -11.10 16 23 C -0.08 -1.25 2.74 -91.56 -0.25 -1.50 16 24 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 25 C 0.05 1.08 5.07 -1.74 -0.01 1.07 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 1.36 7.37 -51.92 -0.38 0.98 16 28 H 0.04 1.02 7.50 -51.93 -0.39 0.63 16 29 H 0.09 2.41 6.11 -51.93 -0.32 2.09 16 30 H 0.01 0.23 6.92 -51.93 -0.36 -0.13 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.03 0.57 7.63 -51.93 -0.40 0.18 16 33 H 0.07 1.22 7.62 -51.93 -0.40 0.82 16 34 H 0.05 0.58 8.11 -51.93 -0.42 0.16 16 35 H 0.06 0.74 7.31 -51.93 -0.38 0.36 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.61 6.35 -51.93 -0.33 0.28 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.34 4.76 6.75 -39.29 -0.27 4.50 16 41 H 0.33 3.62 8.99 -39.29 -0.35 3.26 16 42 H 0.07 1.45 7.54 -51.93 -0.39 1.06 16 43 H 0.07 1.47 5.85 -51.93 -0.30 1.17 16 LS Contribution 311.85 15.07 4.70 4.70 Total: -1.00 -28.13 311.85 -9.73 -37.86 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -7.56 Total: 5.64 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -1.45 Total: -16.92 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -0.40 Total: -48.01 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.13 -9.73 -37.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164405253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.932 kcal (2) G-P(sol) polarization free energy of solvation -28.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds