Wall clock time and date at job start Mon Mar 30 2020 04:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46988 * 2 1 4 4 H 1.08999 * 109.47077 * 178.38731 * 3 2 1 5 5 C 1.50699 * 109.46989 * 58.38634 * 3 2 1 6 6 H 1.08000 * 119.99762 * 239.99620 * 5 3 2 7 7 C 1.37877 * 120.00200 * 60.00088 * 5 3 2 8 8 N 1.31516 * 119.99796 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00044 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47146 * 89.99937 * 9 7 5 11 11 H 1.48498 * 109.47134 * 209.99523 * 9 7 5 12 12 H 1.48503 * 109.47218 * 329.99854 * 9 7 5 13 13 N 1.46899 * 109.47389 * 298.38338 * 3 2 1 14 14 C 1.48925 * 111.00142 * 297.29195 * 13 3 2 15 15 C 1.54790 * 103.81059 * 200.10742 * 14 13 3 16 16 H 1.09000 * 105.48575 * 272.17473 * 15 14 13 17 17 C 1.49125 * 110.92198 * 156.89061 * 15 14 13 18 18 C 1.51051 * 117.53046 * 239.74332 * 17 15 14 19 19 C 1.52838 * 110.74552 * 326.59993 * 18 17 15 20 20 C 1.52824 * 107.47034 * 63.84661 * 19 18 17 21 21 H 1.09004 * 109.18056 * 174.69778 * 20 19 18 22 22 N 1.46905 * 109.21828 * 55.34053 * 20 19 18 23 23 C 1.51060 * 110.76838 * 295.00593 * 20 19 18 24 24 H 1.08999 * 108.52749 * 273.23823 * 23 20 19 25 25 C 1.48907 * 111.00210 * 182.65012 * 13 3 2 26 26 H 1.09005 * 109.47606 * 174.72786 * 1 2 3 27 27 H 1.09008 * 109.47008 * 294.72263 * 1 2 3 28 28 H 1.09001 * 109.47584 * 54.72255 * 1 2 3 29 29 H 1.08997 * 109.46970 * 120.00329 * 2 1 3 30 30 H 1.09001 * 109.46787 * 240.00119 * 2 1 3 31 31 H 0.97001 * 119.99719 * 180.02562 * 8 7 5 32 32 H 1.08993 * 110.55717 * 318.69607 * 14 13 3 33 33 H 1.09005 * 110.55532 * 81.52693 * 14 13 3 34 34 H 1.09002 * 107.83676 * 117.70873 * 17 15 14 35 35 H 1.09005 * 107.80433 * 1.75606 * 17 15 14 36 36 H 1.08999 * 109.22583 * 206.26993 * 18 17 15 37 37 H 1.09000 * 109.18284 * 86.90049 * 18 17 15 38 38 H 1.09002 * 109.85699 * 304.35425 * 19 18 17 39 39 H 1.09006 * 109.85376 * 183.34077 * 19 18 17 40 40 H 1.00894 * 111.00282 * 292.14150 * 22 20 19 41 41 H 1.00904 * 110.99536 * 56.09260 * 22 20 19 42 42 H 1.09004 * 110.54998 * 278.39212 * 25 13 3 43 43 H 1.09001 * 110.54912 * 41.19797 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4426 0.0289 5 6 1.5052 2.1643 1.2100 6 1 0.8873 3.0413 1.0862 7 6 1.8048 1.7051 2.4750 8 7 2.5570 0.6368 2.6257 9 14 1.1426 2.6002 3.9748 10 1 -0.1761 2.0294 4.3497 11 1 2.0911 2.4396 5.1060 12 1 0.9862 4.0433 3.6610 13 7 1.5825 2.1236 -1.2185 14 6 2.1455 1.4758 -2.4355 15 6 2.0190 2.5664 -3.5267 16 1 1.0250 2.4358 -3.9547 17 6 2.9967 2.3334 -4.6283 18 6 4.0073 3.4211 -4.9064 19 6 3.4058 4.8003 -4.6383 20 6 3.0791 4.8764 -3.1473 21 1 2.7355 5.8825 -2.9068 22 7 4.2908 4.5809 -2.3711 23 6 2.0010 3.8827 -2.7838 24 1 1.0299 4.3488 -2.9505 25 6 2.1134 3.5133 -1.2844 26 1 -0.3634 -1.0233 -0.0944 27 1 -0.3633 0.4298 0.9335 28 1 -0.3634 0.5935 -0.8389 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.7675 0.3135 3.5157 32 1 3.1910 1.2104 -2.2789 33 1 1.5623 0.5952 -2.7049 34 1 2.4324 2.1600 -5.5445 35 1 3.5447 1.4192 -4.3998 36 1 4.3200 3.3625 -5.9490 37 1 4.8751 3.2768 -4.2629 38 1 2.4953 4.9274 -5.2238 39 1 4.1263 5.5756 -4.8996 40 1 4.5659 3.6167 -2.4832 41 1 5.0434 5.2034 -2.6246 42 1 1.5049 4.1845 -0.6783 43 1 3.1538 3.5411 -0.9604 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164405253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:36 Heat of formation + Delta-G solvation = -17.933151 kcal Electronic energy + Delta-G solvation = -20345.002757 eV Core-core repulsion = 17616.610813 eV Total energy + Delta-G solvation = -2728.391944 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.31287 -38.13601 -35.47657 -34.29463 -33.24964 -30.93538 -30.03122 -28.31190 -27.47646 -25.40453 -23.58676 -22.61312 -22.12505 -20.71362 -18.53809 -18.23846 -17.62450 -17.04820 -16.31483 -15.99422 -15.61096 -15.18575 -15.06540 -14.79605 -14.49176 -14.13947 -13.74852 -13.66083 -13.35246 -13.12562 -12.83629 -12.69653 -12.59700 -12.43790 -12.35381 -12.21919 -11.84241 -11.73879 -11.57067 -11.20981 -11.06061 -10.92404 -10.84487 -10.72740 -10.44882 -9.44393 -8.89223 -8.06374 -6.15129 1.40829 1.41482 1.51539 2.44427 3.21836 3.48427 3.58453 3.66489 3.92731 3.95737 4.15867 4.21266 4.39674 4.46728 4.52755 4.59140 4.68951 4.71110 4.76670 4.88844 4.89596 4.92982 5.03109 5.08411 5.13318 5.21891 5.24924 5.30160 5.34488 5.41285 5.47909 5.51875 5.58150 5.63303 5.74746 5.79254 5.86463 6.30470 6.36044 6.44315 6.68767 6.75975 6.97529 7.52163 8.99530 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.028482 B = 0.006707 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.839214 B = 4173.503501 C = 4705.135196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.104 4.104 3 C 0.218 3.782 4 H -0.043 1.043 5 C -0.500 4.500 6 H 0.048 0.952 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.950 3.050 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.513 5.513 14 C 0.036 3.964 15 C -0.070 4.070 16 H 0.062 0.938 17 C -0.104 4.104 18 C -0.115 4.115 19 C -0.141 4.141 20 C 0.105 3.895 21 H 0.078 0.922 22 N -0.849 5.849 23 C -0.071 4.071 24 H 0.067 0.933 25 C 0.055 3.945 26 H 0.038 0.962 27 H 0.030 0.970 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.025 0.975 31 H 0.259 0.741 32 H 0.020 0.980 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.337 0.663 41 H 0.344 0.656 42 H 0.042 0.958 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.072 5.860 -15.776 16.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.143 4.143 3 C 0.110 3.890 4 H -0.026 1.026 5 C -0.539 4.539 6 H 0.066 0.934 7 C -0.184 4.184 8 N -0.560 5.560 9 Si 0.776 3.224 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.237 5.237 14 C -0.092 4.092 15 C -0.089 4.089 16 H 0.080 0.920 17 C -0.142 4.142 18 C -0.152 4.152 19 C -0.180 4.180 20 C -0.007 4.007 21 H 0.096 0.904 22 N -0.381 5.381 23 C -0.091 4.091 24 H 0.086 0.914 25 C -0.073 4.073 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.068 0.932 32 H 0.038 0.962 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.151 0.849 41 H 0.158 0.842 42 H 0.061 0.939 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.090 5.901 -14.952 16.112 hybrid contribution 1.022 -0.171 0.532 1.164 sum 2.111 5.730 -14.421 15.660 Atomic orbital electron populations 1.21301 0.95886 0.98537 1.00667 1.21390 0.96387 0.97578 0.98933 1.19132 0.90392 0.91847 0.87593 1.02596 1.21204 1.30366 1.11371 0.90914 0.93400 1.25585 0.95607 0.95838 1.01356 1.70014 1.38751 1.24419 1.22844 0.85681 0.78178 0.79115 0.79435 1.20168 1.20992 1.19705 1.65717 1.53482 1.02574 1.01891 1.23478 0.96483 0.97644 0.91645 1.20370 1.00351 0.93593 0.94625 0.91962 1.20287 0.97120 0.99303 0.97472 1.21110 0.97688 0.94362 1.02065 1.22146 1.01939 0.97336 0.96582 1.20878 0.90295 0.97990 0.91542 0.90389 1.59072 1.08051 1.09084 1.61864 1.20889 0.99030 0.95058 0.94101 0.91422 1.23066 0.98685 0.90243 0.95303 0.94325 0.95064 0.92989 0.92245 0.95625 0.93180 0.96177 0.91396 0.91104 0.92655 0.90159 0.92831 0.90746 0.90362 0.84857 0.84154 0.93932 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.85 9.46 71.98 0.68 -4.17 16 2 C -0.10 -5.20 5.29 30.59 0.16 -5.04 16 3 C 0.22 11.39 1.54 44.17 0.07 11.45 16 4 H -0.04 -2.57 7.99 -2.39 -0.02 -2.59 16 5 C -0.50 -28.29 6.89 25.60 0.18 -28.11 16 6 H 0.05 2.76 7.12 -2.91 -0.02 2.74 16 7 C 0.01 0.81 5.30 84.65 0.45 1.26 16 8 N -0.92 -54.25 11.33 21.45 0.24 -54.01 16 9 Si 0.95 45.26 29.54 68.60 2.03 47.29 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 12 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 13 N -0.51 -22.46 4.43 -856.98 -3.80 -26.26 16 14 C 0.04 1.30 4.67 86.52 0.40 1.71 16 15 C -0.07 -1.97 2.80 -12.02 -0.03 -2.00 16 16 H 0.06 1.72 8.06 -2.39 -0.02 1.70 16 17 C -0.10 -2.24 5.51 28.73 0.16 -2.08 16 18 C -0.11 -2.04 5.57 29.91 0.17 -1.88 16 19 C -0.14 -2.47 5.67 30.48 0.17 -2.30 16 20 C 0.10 2.49 3.35 44.22 0.15 2.64 16 21 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 22 N -0.85 -21.80 7.01 -171.56 -1.20 -23.01 16 23 C -0.07 -2.12 2.74 -11.40 -0.03 -2.15 16 24 H 0.07 1.99 8.13 -2.39 -0.02 1.97 16 25 C 0.06 2.24 5.07 86.54 0.44 2.68 16 26 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.03 1.53 7.37 -2.38 -0.02 1.52 16 28 H 0.05 2.27 7.50 -2.39 -0.02 2.25 16 29 H 0.06 3.32 6.11 -2.39 -0.01 3.31 16 30 H 0.03 1.16 6.92 -2.39 -0.02 1.14 16 31 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 32 H 0.02 0.77 7.63 -2.39 -0.02 0.75 16 33 H 0.07 2.42 7.62 -2.38 -0.02 2.41 16 34 H 0.07 1.30 8.11 -2.39 -0.02 1.28 16 35 H 0.05 1.25 7.31 -2.38 -0.02 1.24 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.05 1.01 6.35 -2.39 -0.02 1.00 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.34 9.24 6.75 -89.70 -0.61 8.64 16 41 H 0.34 7.03 8.99 -89.69 -0.81 6.22 16 42 H 0.04 1.89 7.54 -2.38 -0.02 1.87 16 43 H 0.05 2.35 5.85 -2.39 -0.01 2.34 16 Total: -1.00 -62.11 311.85 -0.20 -62.31 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -0.42 Total: 21.66 kcal Atomic # 6 Polarization: -30.94 SS G_CDS: 2.96 Total: -27.98 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -4.76 Total: -103.28 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -62.11 -0.20 -62.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164405253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.375 kcal (2) G-P(sol) polarization free energy of solvation -62.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds