Wall clock time and date at job start Mon Mar 30 2020 04:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47051 * 304.06747 * 3 2 1 5 5 C 1.50696 * 109.46962 * 184.06954 * 3 2 1 6 6 H 1.08006 * 120.00180 * 239.99855 * 5 3 2 7 7 C 1.37874 * 120.00431 * 59.99594 * 5 3 2 8 8 N 1.31517 * 119.99611 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00446 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46860 * 89.99942 * 9 7 5 11 11 H 1.48496 * 109.47350 * 210.00143 * 9 7 5 12 12 H 1.48498 * 109.47274 * 330.00410 * 9 7 5 13 13 N 1.46897 * 109.47554 * 64.06753 * 3 2 1 14 14 C 1.46897 * 111.00163 * 205.97273 * 13 3 2 15 15 H 1.08997 * 110.62887 * 327.20156 * 14 13 3 16 16 C 1.55141 * 110.70736 * 204.09935 * 14 13 3 17 17 C 1.54904 * 101.65811 * 205.96498 * 16 14 13 18 18 H 1.09007 * 110.36931 * 278.24354 * 17 16 14 19 19 C 1.52990 * 110.37743 * 155.89901 * 17 16 14 20 20 N 1.47848 * 104.79577 * 37.06551 * 17 16 14 21 21 C 1.46903 * 111.00369 * 213.64275 * 20 17 16 22 22 C 1.53001 * 117.49300 * 248.62334 * 21 20 17 23 23 C 1.52999 * 117.49616 * 180.02562 * 21 20 17 24 24 C 1.47450 * 108.56599 * 335.91091 * 20 17 16 25 25 H 1.08996 * 109.46696 * 174.77993 * 1 2 3 26 26 H 1.09003 * 109.46761 * 294.77871 * 1 2 3 27 27 H 1.08995 * 109.47100 * 54.77802 * 1 2 3 28 28 H 1.08992 * 109.46868 * 239.99660 * 2 1 3 29 29 H 1.09002 * 109.47020 * 119.99332 * 2 1 3 30 30 H 0.97001 * 119.99537 * 179.97438 * 8 7 5 31 31 H 1.00900 * 111.00099 * 82.01440 * 13 3 2 32 32 H 1.09000 * 110.99138 * 324.05700 * 16 14 13 33 33 H 1.09003 * 110.99243 * 87.86723 * 16 14 13 34 34 H 1.09000 * 109.47665 * 61.45724 * 19 17 16 35 35 H 1.09008 * 109.47155 * 181.45462 * 19 17 16 36 36 H 1.08999 * 109.47381 * 301.45205 * 19 17 16 37 37 H 1.08993 * 115.54629 * 34.32918 * 21 20 17 38 38 H 1.08998 * 117.50474 * 359.97438 * 22 21 20 39 39 H 1.09007 * 117.49386 * 145.01739 * 22 21 20 40 40 H 1.09003 * 117.49424 * 214.97000 * 23 21 20 41 41 H 1.09000 * 117.50227 * 359.97438 * 23 21 20 42 42 H 1.08998 * 109.88599 * 241.57946 * 24 20 17 43 43 H 1.08998 * 109.88834 * 120.39497 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6183 1.9769 -0.8513 5 6 3.5436 1.4437 -0.1008 6 1 4.1370 1.8925 0.6821 7 6 4.1618 0.8718 -1.1924 8 7 3.4393 0.3257 -2.1460 9 14 6.0256 0.8739 -1.3178 10 1 6.5659 -0.3541 -0.6810 11 1 6.4256 0.9072 -2.7475 12 1 6.5670 2.0702 -0.6243 13 7 1.6322 2.1061 1.2455 14 6 1.5337 3.5599 1.0595 15 1 2.2713 3.9053 0.3352 16 6 1.7060 4.2989 2.4127 17 6 0.9300 5.6140 2.1522 18 1 1.5555 6.3224 1.6090 19 6 0.4562 6.2236 3.4730 20 7 -0.2283 5.2116 1.3262 21 6 -0.5875 6.2693 0.3720 22 6 -1.9128 7.0008 0.5943 23 6 -1.7721 6.0072 -0.5601 24 6 0.1079 3.9590 0.6246 25 1 -0.3632 -1.0234 -0.0935 26 1 -0.3633 0.4307 0.9331 27 1 -0.3633 0.5927 -0.8395 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 3.8743 -0.0764 -2.9142 31 1 2.2637 1.8799 1.9992 32 1 1.2533 3.7332 3.2270 33 1 2.7577 4.5000 2.6167 34 1 1.3199 6.4630 4.0933 35 1 -0.1095 7.1332 3.2711 36 1 -0.1795 5.5089 3.9957 37 1 0.2469 6.8478 -0.0244 38 1 -2.5184 6.6970 1.4482 39 1 -1.9505 8.0611 0.3442 40 1 -1.7172 6.4137 -1.5700 41 1 -2.2847 5.0499 -0.4657 42 1 0.0801 4.1188 -0.4532 43 1 -0.5977 3.1766 0.9040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164868601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:25 Heat of formation + Delta-G solvation = 19.938386 kcal Electronic energy + Delta-G solvation = -19565.494801 eV Core-core repulsion = 16838.745090 eV Total energy + Delta-G solvation = -2726.749711 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.28339 -36.54914 -35.18593 -32.37314 -31.16868 -30.50030 -28.21910 -25.85105 -25.12143 -22.78023 -22.24770 -21.25655 -20.34991 -19.57511 -18.98390 -16.59878 -16.41691 -15.49247 -14.88570 -14.62261 -13.92000 -13.73735 -13.37153 -13.28743 -12.77991 -12.50742 -12.25534 -11.96853 -11.78909 -11.51881 -11.45421 -11.39136 -11.17471 -11.09754 -10.80797 -10.71671 -10.55099 -10.30301 -10.18506 -10.04012 -9.83691 -9.57666 -9.41189 -9.07066 -8.39074 -8.09013 -7.26747 -6.01216 -4.14372 3.24865 3.32223 3.34338 3.85621 4.04317 4.37506 4.89218 4.98803 5.04040 5.12167 5.22877 5.25811 5.39695 5.50343 5.60250 5.71064 5.74262 5.82912 5.84403 6.02641 6.12932 6.14716 6.20471 6.24962 6.35475 6.41349 6.44789 6.51950 6.57066 6.72753 6.76116 7.13177 7.19743 7.27150 7.41815 7.47011 7.60472 7.77091 8.09171 8.14878 8.33801 8.66112 8.99033 9.53438 10.98820 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022432 B = 0.005732 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.925110 B = 4883.579965 C = 5182.970078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.677 5.677 14 C 0.076 3.924 15 H 0.052 0.948 16 C -0.128 4.128 17 C 0.073 3.927 18 H 0.050 0.950 19 C -0.130 4.130 20 N -0.497 5.497 21 C 0.004 3.996 22 C -0.166 4.166 23 C -0.174 4.174 24 C 0.058 3.942 25 H 0.024 0.976 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.089 0.911 29 H 0.030 0.970 30 H 0.261 0.739 31 H 0.330 0.670 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.049 0.951 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.037 10.229 6.091 13.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.585 4.585 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.307 5.307 14 C -0.036 4.036 15 H 0.070 0.930 16 C -0.166 4.166 17 C -0.036 4.036 18 H 0.068 0.932 19 C -0.188 4.188 20 N -0.222 5.222 21 C -0.105 4.105 22 C -0.204 4.204 23 C -0.212 4.212 24 C -0.070 4.070 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.107 0.893 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.147 0.853 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.068 0.932 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.129 9.931 6.105 14.212 hybrid contribution 2.795 0.356 -0.871 2.949 sum -5.334 10.287 5.234 12.715 Atomic orbital electron populations 1.21687 0.98957 0.98237 1.00389 1.21489 0.92112 0.99218 1.01621 1.19186 0.92545 0.91182 0.86349 0.95113 1.21872 0.92736 1.37977 1.05873 0.92962 1.24931 0.97916 0.95008 0.95642 1.69882 1.34864 1.37959 1.09553 0.86669 0.86163 0.78387 0.77204 1.20592 1.21208 1.20153 1.60894 1.55128 1.04922 1.09741 1.22530 0.95436 0.90539 0.95101 0.93031 1.22958 0.99469 0.95373 0.98838 1.22472 0.90295 0.96304 0.94499 0.93183 1.21653 1.00643 1.00498 0.95981 1.63380 1.36215 1.02358 1.20218 1.22612 0.91772 0.97964 0.98179 1.23006 1.00135 0.96810 1.00455 1.23002 1.01926 1.01382 0.94869 1.22849 0.97144 0.90561 0.96427 0.95733 0.93398 0.94515 0.89275 0.95113 0.92885 0.85343 0.90167 0.91502 0.92839 0.93058 0.92063 0.89785 0.88407 0.89337 0.89019 0.88271 0.93243 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.73 37.16 0.36 -2.43 16 2 C -0.11 -2.52 5.44 -26.73 -0.15 -2.67 16 3 C 0.22 5.24 1.86 -68.87 -0.13 5.11 16 4 H 0.03 0.84 7.84 -51.93 -0.41 0.43 16 5 C -0.55 -14.53 8.36 -34.44 -0.29 -14.82 16 6 H 0.05 1.39 7.73 -52.48 -0.41 0.98 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.89 11.30 55.43 0.63 -24.26 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 13 N -0.68 -13.90 5.57 -99.06 -0.55 -14.45 16 14 C 0.08 1.41 3.01 -65.89 -0.20 1.21 16 15 H 0.05 1.10 7.74 -51.93 -0.40 0.70 16 16 C -0.13 -1.96 5.88 -24.59 -0.14 -2.11 16 17 C 0.07 1.02 3.05 -66.19 -0.20 0.82 16 18 H 0.05 0.71 7.56 -51.93 -0.39 0.31 16 19 C -0.13 -1.53 9.59 37.15 0.36 -1.18 16 20 N -0.50 -7.42 4.98 -215.48 -1.07 -8.49 16 21 C 0.00 0.06 5.03 -67.71 -0.34 -0.28 16 22 C -0.17 -1.87 10.46 -26.75 -0.28 -2.15 16 23 C -0.17 -2.13 9.61 -26.75 -0.26 -2.39 16 24 C 0.06 1.00 6.30 -2.83 -0.02 0.98 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.94 7.87 -51.93 -0.41 0.54 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.09 2.38 5.97 -51.93 -0.31 2.07 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.33 6.72 8.10 -39.29 -0.32 6.41 16 32 H 0.08 1.22 8.06 -51.93 -0.42 0.80 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.13 7.74 -51.93 -0.40 0.73 16 38 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.10 1.29 8.10 -51.93 -0.42 0.87 16 42 H 0.05 0.90 7.21 -51.93 -0.37 0.52 16 43 H 0.09 1.58 8.03 -51.93 -0.42 1.16 16 LS Contribution 338.00 15.07 5.09 5.09 Total: -1.00 -26.81 338.00 -10.34 -37.16 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -8.04 Total: 7.10 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -1.38 Total: -18.16 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -1.00 Total: -47.21 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -26.81 -10.34 -37.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164868601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.096 kcal (2) G-P(sol) polarization free energy of solvation -26.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds