Wall clock time and date at job start Mon Mar 30 2020 04:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47132 * 2 1 4 4 H 1.09003 * 109.47129 * 303.44818 * 3 2 1 5 5 C 1.50700 * 109.47112 * 183.44749 * 3 2 1 6 6 H 1.07994 * 120.00039 * 239.99612 * 5 3 2 7 7 C 1.37878 * 119.99743 * 59.99897 * 5 3 2 8 8 N 1.31517 * 120.00411 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99724 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47122 * 269.99809 * 9 7 5 11 11 H 1.48496 * 109.47220 * 30.00171 * 9 7 5 12 12 H 1.48503 * 109.46607 * 150.00151 * 9 7 5 13 13 N 1.46895 * 109.47290 * 63.44931 * 3 2 1 14 14 C 1.46906 * 110.99782 * 206.78957 * 13 3 2 15 15 H 1.09001 * 110.28942 * 31.37228 * 14 13 3 16 16 C 1.54267 * 110.32337 * 153.50011 * 14 13 3 17 17 C 1.54382 * 105.05946 * 118.89426 * 16 14 13 18 18 H 1.09006 * 110.41218 * 265.07381 * 17 16 14 19 19 C 1.52998 * 110.41323 * 142.74857 * 17 16 14 20 20 N 1.48563 * 104.59786 * 23.85104 * 17 16 14 21 21 C 1.46890 * 111.00243 * 200.96205 * 20 17 16 22 22 C 1.52998 * 117.49889 * 248.62350 * 21 20 17 23 23 C 1.53000 * 60.00128 * 252.50671 * 22 21 20 24 24 C 1.48731 * 104.28577 * 320.57366 * 20 17 16 25 25 H 1.08994 * 109.46889 * 174.87962 * 1 2 3 26 26 H 1.09003 * 109.47131 * 294.88185 * 1 2 3 27 27 H 1.09003 * 109.46843 * 54.87540 * 1 2 3 28 28 H 1.08992 * 109.47651 * 240.00013 * 2 1 3 29 29 H 1.09004 * 109.47142 * 119.99248 * 2 1 3 30 30 H 0.96997 * 120.00094 * 180.02562 * 8 7 5 31 31 H 1.00895 * 111.00232 * 82.83426 * 13 3 2 32 32 H 1.08996 * 110.32352 * 237.78693 * 16 14 13 33 33 H 1.08995 * 110.32491 * 359.89627 * 16 14 13 34 34 H 1.09004 * 109.46709 * 61.44902 * 19 17 16 35 35 H 1.08990 * 109.47131 * 181.45142 * 19 17 16 36 36 H 1.08995 * 109.46723 * 301.45504 * 19 17 16 37 37 H 1.09005 * 115.55292 * 34.33005 * 21 20 17 38 38 H 1.08995 * 117.49803 * 359.97438 * 22 21 20 39 39 H 1.08999 * 117.50104 * 145.02041 * 22 21 20 40 40 H 1.08999 * 117.49904 * 252.50843 * 23 22 21 41 41 H 1.09004 * 117.50236 * 107.48644 * 23 22 21 42 42 H 1.08993 * 110.39037 * 280.63804 * 24 20 17 43 43 H 1.08996 * 110.50773 * 158.14243 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6271 1.9739 -0.8575 5 6 3.5446 1.4434 -0.0854 6 1 4.1299 1.8950 0.7018 7 6 4.1738 0.8676 -1.1687 8 7 3.4611 0.3171 -2.1272 9 14 6.0389 0.8693 -1.2750 10 1 6.4935 2.0957 -1.9779 11 1 6.6127 0.8419 0.0944 12 1 6.4929 -0.3287 -2.0260 13 7 1.6196 2.1106 1.2389 14 6 1.5044 3.5617 1.0414 15 1 1.2062 3.7812 0.0162 16 6 0.4862 4.1585 2.0349 17 6 1.2951 5.1630 2.8834 18 1 1.6396 4.6921 3.8042 19 6 0.4481 6.3969 3.2009 20 7 2.4511 5.5317 2.0262 21 6 3.5540 6.0705 2.8329 22 6 3.8831 7.5565 2.6766 23 6 4.8245 6.4993 2.0959 24 6 2.8436 4.2556 1.3707 25 1 -0.3633 -1.0235 -0.0917 26 1 -0.3633 0.4324 0.9323 27 1 -0.3633 0.5913 -0.8406 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.9039 -0.0883 -2.8891 31 1 2.2509 1.8978 1.9966 32 1 -0.3107 4.6724 1.4974 33 1 0.0706 3.3744 2.6678 34 1 -0.4257 6.0985 3.7802 35 1 1.0415 7.1063 3.7777 36 1 0.1250 6.8649 2.2711 37 1 3.6710 5.6302 3.8231 38 1 3.2815 8.1341 1.9749 39 1 4.2166 8.0942 3.5642 40 1 5.7771 6.3415 2.6014 41 1 4.8418 6.3815 1.0124 42 1 3.4313 3.6428 2.0540 43 1 3.4044 4.4524 0.4570 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164868822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:27 Heat of formation + Delta-G solvation = 21.530904 kcal Electronic energy + Delta-G solvation = -19664.929907 eV Core-core repulsion = 16938.249253 eV Total energy + Delta-G solvation = -2726.680654 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.24332 -36.58053 -35.14769 -32.36415 -31.24154 -30.34839 -28.25423 -25.79169 -24.96478 -22.70118 -22.22909 -21.42985 -20.02196 -19.57782 -19.46787 -16.56091 -16.20549 -15.44370 -14.86963 -14.39016 -14.12704 -13.83086 -13.19648 -13.13276 -12.82428 -12.47480 -12.25568 -12.07572 -11.63846 -11.52364 -11.41017 -11.25288 -11.16373 -11.04217 -10.87709 -10.69300 -10.60223 -10.21581 -10.19142 -10.12102 -9.82551 -9.56851 -9.38115 -9.01567 -8.37747 -8.22937 -7.26364 -5.99717 -4.12122 3.25727 3.33399 3.35571 3.87854 4.08522 4.38899 4.93840 5.02012 5.04138 5.17828 5.22685 5.31480 5.48807 5.53093 5.66469 5.72583 5.75764 5.86542 5.92696 5.95971 6.07307 6.14299 6.25412 6.27866 6.39782 6.42489 6.47865 6.51024 6.64489 6.72533 6.73700 7.12472 7.15417 7.20214 7.39270 7.46236 7.60889 7.78352 8.09586 8.14722 8.34612 8.65494 9.00280 9.55471 11.00684 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018218 B = 0.007342 C = 0.005424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.586165 B = 3812.546966 C = 5160.965851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.282 1.282 11 H -0.276 1.276 12 H -0.286 1.286 13 N -0.680 5.680 14 C 0.096 3.904 15 H 0.078 0.922 16 C -0.113 4.113 17 C 0.061 3.939 18 H 0.046 0.954 19 C -0.131 4.131 20 N -0.483 5.483 21 C 0.000 4.000 22 C -0.165 4.165 23 C -0.173 4.173 24 C 0.024 3.976 25 H 0.023 0.977 26 H 0.046 0.954 27 H 0.036 0.964 28 H 0.089 0.911 29 H 0.029 0.971 30 H 0.261 0.739 31 H 0.327 0.673 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.044 0.956 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.656 9.766 8.901 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.050 0.950 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.201 1.201 12 H -0.212 1.212 13 N -0.309 5.309 14 C -0.016 4.016 15 H 0.096 0.904 16 C -0.152 4.152 17 C -0.048 4.048 18 H 0.064 0.936 19 C -0.189 4.189 20 N -0.208 5.208 21 C -0.110 4.110 22 C -0.203 4.203 23 C -0.211 4.211 24 C -0.104 4.104 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.108 0.892 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.117 0.883 42 H 0.062 0.938 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.459 9.936 8.212 13.346 hybrid contribution 2.470 -0.397 0.413 2.536 sum -0.988 9.539 8.625 12.898 Atomic orbital electron populations 1.21684 0.99013 0.98207 1.00381 1.21503 0.92053 0.99322 1.01629 1.19227 0.92665 0.91100 0.86317 0.95002 1.21865 0.92558 1.37611 1.06038 0.92816 1.24918 0.97783 0.95038 0.95699 1.69874 1.34873 1.37865 1.09705 0.86707 0.86368 0.77541 0.78041 1.20773 1.20089 1.21190 1.61024 1.54634 1.05540 1.09682 1.22146 0.92003 0.88808 0.98625 0.90403 1.22494 0.97777 0.97082 0.97798 1.22634 0.91896 0.95406 0.94838 0.93622 1.21667 0.98673 0.97144 1.01434 1.65213 1.04043 1.26423 1.25094 1.22542 0.94231 0.97523 0.96715 1.22984 1.02951 0.91590 1.02748 1.22991 0.93474 1.03641 1.00964 1.23843 0.98814 0.88871 0.98915 0.95756 0.93483 0.94472 0.89236 0.95177 0.92913 0.85580 0.91616 0.90595 0.92728 0.93199 0.92070 0.89929 0.88399 0.89340 0.89077 0.88262 0.93788 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.72 37.16 0.36 -2.41 16 2 C -0.11 -2.52 5.44 -26.73 -0.15 -2.67 16 3 C 0.21 5.16 2.00 -68.87 -0.14 5.02 16 4 H 0.03 0.86 7.38 -51.93 -0.38 0.48 16 5 C -0.54 -14.12 8.00 -34.44 -0.28 -14.40 16 6 H 0.05 1.39 7.05 -52.49 -0.37 1.02 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 8 N -0.88 -24.75 11.30 55.43 0.63 -24.12 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.68 -13.78 5.48 -99.50 -0.55 -14.33 16 14 C 0.10 1.77 3.38 -66.32 -0.22 1.54 16 15 H 0.08 1.58 7.39 -51.93 -0.38 1.20 16 16 C -0.11 -1.72 6.34 -25.34 -0.16 -1.88 16 17 C 0.06 0.85 2.88 -66.07 -0.19 0.66 16 18 H 0.05 0.65 7.82 -51.93 -0.41 0.24 16 19 C -0.13 -1.56 9.34 37.16 0.35 -1.21 16 20 N -0.48 -7.43 5.21 -214.09 -1.12 -8.54 16 21 C 0.00 -0.01 4.94 -67.72 -0.33 -0.34 16 22 C -0.16 -1.95 10.46 -26.73 -0.28 -2.23 16 23 C -0.17 -2.27 10.09 -26.73 -0.27 -2.54 16 24 C 0.02 0.43 4.91 -2.08 -0.01 0.42 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.92 7.86 -51.93 -0.41 0.51 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 2.37 5.98 -51.93 -0.31 2.06 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.33 6.67 7.70 -39.29 -0.30 6.37 16 32 H 0.07 0.96 7.86 -51.93 -0.41 0.55 16 33 H 0.08 1.16 7.95 -51.93 -0.41 0.75 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.56 8.10 -51.93 -0.42 0.14 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.12 7.88 -51.93 -0.41 0.71 16 38 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 42 H 0.04 0.83 7.14 -51.93 -0.37 0.46 16 43 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 335.49 15.07 5.06 5.06 Total: -1.00 -26.30 335.49 -10.36 -36.66 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.95 Total: 7.61 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -1.41 Total: -18.29 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -1.04 Total: -46.99 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -26.30 -10.36 -36.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164868822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.191 kcal (2) G-P(sol) polarization free energy of solvation -26.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds