Wall clock time and date at job start Mon Mar 30 2020 03:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00032 * 2 1 4 4 C 1.52998 * 109.57715 * 59.84165 * 3 2 1 5 5 C 1.53117 * 109.52318 * 180.02562 * 3 2 1 6 6 C 1.53038 * 109.27580 * 177.56069 * 5 3 2 7 7 N 1.46855 * 109.52346 * 300.81540 * 6 5 3 8 8 C 1.46894 * 110.99847 * 185.84405 * 7 6 5 9 9 C 1.52999 * 109.47052 * 160.15261 * 8 7 6 10 10 C 1.50701 * 115.55266 * 61.01884 * 9 8 7 11 11 H 1.08001 * 120.00015 * 232.65397 * 10 9 8 12 12 C 1.37878 * 119.99858 * 52.64343 * 10 9 8 13 13 N 1.31509 * 119.99906 * 6.66534 * 12 10 9 14 14 Si 1.86800 * 120.00020 * 186.93659 * 12 10 9 15 15 H 1.48508 * 109.47155 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47114 * 119.99950 * 14 12 10 17 17 H 1.48495 * 109.47202 * 240.00380 * 14 12 10 18 18 C 1.53003 * 117.50102 * 206.68783 * 9 8 7 19 19 C 1.53003 * 117.49970 * 275.35111 * 9 8 7 20 20 C 1.46846 * 111.19363 * 61.74792 * 7 6 5 21 21 C 1.53036 * 109.52271 * 298.25304 * 20 7 6 22 22 H 1.08999 * 109.46790 * 299.99750 * 1 2 3 23 23 H 1.08987 * 109.47381 * 60.00087 * 1 2 3 24 24 H 1.09001 * 109.46939 * 180.02562 * 1 2 3 25 25 H 1.00900 * 111.00392 * 123.95458 * 2 1 3 26 26 H 1.08995 * 109.47552 * 180.16038 * 4 3 2 27 27 H 1.09005 * 109.47042 * 300.15919 * 4 3 2 28 28 H 1.09008 * 109.46957 * 60.15765 * 4 3 2 29 29 H 1.08996 * 109.50848 * 57.61801 * 5 3 2 30 30 H 1.08999 * 109.50322 * 297.49827 * 5 3 2 31 31 H 1.09009 * 109.46030 * 180.80643 * 6 5 3 32 32 H 1.08998 * 109.45940 * 60.83005 * 6 5 3 33 33 H 1.09000 * 109.47457 * 40.15029 * 8 7 6 34 34 H 1.09009 * 109.47338 * 280.14972 * 8 7 6 35 35 H 0.96998 * 119.99897 * 184.97206 * 13 12 10 36 36 H 1.09001 * 117.50055 * 215.00171 * 18 9 8 37 37 H 1.08998 * 117.49490 * 0.02824 * 18 9 8 38 38 H 1.08997 * 117.49227 * 359.96908 * 19 9 8 39 39 H 1.08995 * 117.50479 * 144.97479 * 19 9 8 40 40 H 1.09001 * 109.46653 * 58.27218 * 20 7 6 41 41 H 1.08997 * 109.46060 * 178.24648 * 20 7 6 42 42 H 1.09002 * 109.50839 * 299.24391 * 21 20 7 43 43 H 1.08997 * 109.53896 * 179.13637 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.5031 2.1095 1.2464 5 6 3.5261 1.3319 -0.0006 6 6 4.0683 2.7617 -0.0621 7 7 3.5773 3.4209 -1.2791 8 6 4.1880 4.7469 -1.4425 9 6 4.0638 5.1892 -2.9018 10 6 2.6561 5.3254 -3.4223 11 1 2.3654 4.8202 -4.3316 12 6 1.7394 6.0946 -2.7376 13 7 2.1243 6.8137 -1.7060 14 14 -0.0509 6.1095 -3.2706 15 1 -0.2252 5.2174 -4.4450 16 1 -0.9039 5.6292 -2.1539 17 1 -0.4470 7.4931 -3.6364 18 6 5.1118 6.1683 -3.4349 19 6 5.1350 4.7040 -3.8807 20 6 2.1118 3.5128 -1.2787 21 6 1.5111 2.1054 -1.2536 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8307 -0.5261 0.7813 26 1 1.8922 3.1276 1.2433 27 1 0.4133 2.1372 1.2456 28 1 1.8527 1.5896 2.1384 29 1 3.8754 0.7726 -0.8685 30 1 3.8780 0.8482 0.9105 31 1 5.1580 2.7365 -0.0772 32 1 3.7299 3.3163 0.8130 33 1 5.2412 4.6985 -1.1658 34 1 3.6763 5.4641 -0.8006 35 1 1.4683 7.2978 -1.1804 36 1 4.7830 6.9109 -4.1620 37 1 5.8899 6.4969 -2.7460 38 1 5.9284 4.0702 -3.4847 39 1 4.8216 4.4830 -4.9009 40 1 1.7826 4.0640 -0.3978 41 1 1.7803 4.0330 -2.1773 42 1 1.8286 1.5582 -2.1412 43 1 0.4234 2.1736 -1.2378 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168466301.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:27 Heat of formation + Delta-G solvation = 19.555736 kcal Electronic energy + Delta-G solvation = -20477.942883 eV Core-core repulsion = 17751.176579 eV Total energy + Delta-G solvation = -2726.766304 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.78623 -38.61392 -36.33533 -34.23707 -32.42357 -31.63385 -28.87383 -27.76466 -26.95582 -25.59224 -23.68647 -22.87553 -22.34179 -20.84232 -19.17737 -18.04447 -17.14720 -16.66800 -16.20705 -15.95464 -15.79022 -15.39549 -15.19605 -14.75360 -14.59635 -14.33754 -13.65521 -13.49062 -13.44442 -13.10127 -12.87971 -12.75230 -12.57984 -12.45251 -12.30728 -12.16729 -12.00454 -11.90955 -11.80427 -11.35756 -11.18623 -11.07606 -10.67982 -10.34676 -9.86133 -9.31535 -8.80790 -8.06195 -6.06868 1.35116 1.41313 1.49507 2.40818 3.06627 3.23380 3.35707 3.77439 3.79981 3.99477 4.20752 4.32261 4.43861 4.46501 4.49581 4.56483 4.63107 4.68323 4.73332 4.75744 4.81983 4.86441 4.94440 4.96066 5.04611 5.05728 5.07471 5.17061 5.23126 5.26455 5.34308 5.37970 5.58017 5.61696 5.65035 5.72128 5.90997 6.14213 6.48522 6.56898 6.59149 6.71380 6.90389 7.45945 8.96393 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.008915 C = 0.007013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.166296 B = 3140.124719 C = 3991.358709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.684 5.684 3 C 0.117 3.883 4 C -0.176 4.176 5 C -0.089 4.089 6 C 0.051 3.949 7 N -0.523 5.523 8 C 0.106 3.894 9 C 0.034 3.966 10 C -0.481 4.481 11 H 0.047 0.953 12 C 0.042 3.958 13 N -0.898 5.898 14 Si 0.918 3.082 15 H -0.266 1.266 16 H -0.276 1.276 17 H -0.284 1.284 18 C -0.195 4.195 19 C -0.180 4.180 20 C 0.047 3.953 21 C -0.095 4.095 22 H 0.027 0.973 23 H 0.054 0.946 24 H 0.082 0.918 25 H 0.348 0.652 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.018 0.982 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.258 0.742 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.071 0.929 40 H -0.004 1.004 41 H 0.106 0.894 42 H 0.060 0.940 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.547 -10.978 6.488 12.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.315 5.315 3 C 0.026 3.974 4 C -0.235 4.235 5 C -0.127 4.127 6 C -0.077 4.077 7 N -0.247 5.247 8 C -0.022 4.022 9 C 0.034 3.966 10 C -0.518 4.518 11 H 0.065 0.935 12 C -0.158 4.158 13 N -0.536 5.536 14 Si 0.743 3.257 15 H -0.190 1.190 16 H -0.202 1.202 17 H -0.211 1.211 18 C -0.234 4.234 19 C -0.217 4.217 20 C -0.081 4.081 21 C -0.134 4.134 22 H 0.045 0.955 23 H 0.072 0.928 24 H 0.100 0.900 25 H 0.166 0.834 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.036 0.964 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.015 0.985 41 H 0.123 0.877 42 H 0.079 0.921 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.435 -11.189 5.513 12.481 hybrid contribution -1.417 1.426 1.293 2.390 sum -1.851 -9.763 6.806 12.044 Atomic orbital electron populations 1.22278 0.87819 1.02338 1.00295 1.60554 1.08152 1.12805 1.49966 1.20864 0.95088 0.87938 0.93555 1.22535 1.01188 1.01095 0.98661 1.21466 0.93131 0.95463 1.02610 1.22193 0.99655 0.95102 0.90781 1.61770 1.06488 1.20638 1.35825 1.21344 0.95436 0.88682 0.96729 1.18933 0.89600 0.96980 0.91116 1.20582 0.95049 1.27410 1.08789 0.93500 1.25339 1.00913 0.93978 0.95584 1.70060 1.33990 1.30145 1.19369 0.86134 0.82718 0.77860 0.78949 1.19026 1.20157 1.21058 1.22822 1.04153 0.92243 1.04166 1.22762 1.03296 0.96037 0.99636 1.22587 0.87733 0.95620 1.02117 1.21598 0.98531 0.95351 0.97884 0.95492 0.92758 0.89975 0.83351 0.93659 0.92763 0.91178 0.91256 0.89891 0.90759 0.96401 0.93982 0.94420 0.93287 0.91816 0.90886 0.89725 0.91029 0.98546 0.87650 0.92106 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.92 127.69 1.27 1.75 16 2 N -0.68 -16.53 6.45 -492.62 -3.18 -19.70 16 3 C 0.12 3.35 0.71 3.61 0.00 3.35 16 4 C -0.18 -4.87 7.66 71.98 0.55 -4.32 16 5 C -0.09 -2.50 5.14 30.65 0.16 -2.34 16 6 C 0.05 1.73 5.18 86.32 0.45 2.18 16 7 N -0.52 -21.74 4.59 -896.34 -4.11 -25.85 16 8 C 0.11 4.89 4.77 86.30 0.41 5.30 16 9 C 0.03 1.68 1.76 -52.93 -0.09 1.59 16 10 C -0.48 -25.50 6.59 25.60 0.17 -25.33 16 11 H 0.05 2.56 7.82 -2.91 -0.02 2.54 16 12 C 0.04 2.22 3.68 84.66 0.31 2.53 16 13 N -0.90 -49.08 11.49 21.45 0.25 -48.83 16 14 Si 0.92 42.02 29.00 68.60 1.99 44.01 16 15 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 18 C -0.20 -8.97 9.94 30.62 0.30 -8.67 16 19 C -0.18 -7.82 9.95 30.62 0.30 -7.52 16 20 C 0.05 2.04 4.48 86.33 0.39 2.42 16 21 C -0.10 -3.43 4.58 30.65 0.14 -3.29 16 22 H 0.03 0.57 6.31 -2.39 -0.02 0.55 16 23 H 0.05 1.36 6.37 -2.39 -0.02 1.34 16 24 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.35 6.81 8.81 -89.69 -0.79 6.02 16 26 H 0.04 1.48 4.92 -2.39 -0.01 1.47 16 27 H 0.05 1.48 6.40 -2.38 -0.02 1.46 16 28 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 2.33 7.93 -2.38 -0.02 2.31 16 32 H 0.02 0.62 6.51 -2.39 -0.02 0.61 16 33 H 0.04 1.80 7.76 -2.39 -0.02 1.78 16 34 H 0.04 1.97 6.19 -2.38 -0.01 1.96 16 35 H 0.26 13.63 8.32 -92.71 -0.77 12.85 16 36 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 38 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 39 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.00 -0.17 6.51 -2.39 -0.02 -0.18 16 41 H 0.11 5.21 3.04 -2.39 -0.01 5.21 16 42 H 0.06 2.32 8.14 -2.39 -0.02 2.31 16 43 H 0.05 1.87 6.55 -2.39 -0.02 1.85 16 Total: -1.00 -55.92 313.94 -0.49 -56.41 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.20 Total: 26.30 kcal Atomic # 6 Polarization: -36.70 SS G_CDS: 4.36 Total: -32.34 kcal Atomic # 7 Polarization: -87.34 SS G_CDS: -7.04 Total: -94.38 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.99 Total: 44.01 kcal Total: -55.92 -0.49 -56.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168466301.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.969 kcal (2) G-P(sol) polarization free energy of solvation -55.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds