Wall clock time and date at job start Mon Mar 30 2020 04:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46839 * 2 1 4 4 H 1.09007 * 109.46899 * 54.60645 * 3 2 1 5 5 C 1.50698 * 109.47106 * 174.60838 * 3 2 1 6 6 H 1.08003 * 119.99742 * 119.99930 * 5 3 2 7 7 C 1.37870 * 120.00367 * 299.99857 * 5 3 2 8 8 N 1.31527 * 119.99733 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00490 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47025 * 90.00199 * 9 7 5 11 11 H 1.48494 * 109.47234 * 210.00188 * 9 7 5 12 12 H 1.48500 * 109.47116 * 330.00236 * 9 7 5 13 13 N 1.46898 * 109.47319 * 294.61264 * 3 2 1 14 14 C 1.46898 * 111.00376 * 152.62829 * 13 3 2 15 15 H 1.08999 * 110.43654 * 33.41517 * 14 13 3 16 16 C 1.54989 * 110.48621 * 270.72633 * 14 13 3 17 17 C 1.55193 * 104.93117 * 238.83012 * 16 14 13 18 18 N 1.47093 * 103.52779 * 336.00815 * 17 16 14 19 19 C 1.45365 * 117.11759 * 162.96180 * 18 17 16 20 20 C 1.53638 * 108.39095 * 177.84643 * 19 18 17 21 21 C 1.52819 * 110.69529 * 57.03232 * 20 19 18 22 22 C 1.53660 * 110.62017 * 306.25748 * 21 20 19 23 23 C 1.48719 * 103.70231 * 42.23097 * 18 17 16 24 24 H 1.08997 * 110.34903 * 73.85496 * 23 18 17 25 25 H 1.08990 * 109.47188 * 61.85325 * 1 2 3 26 26 H 1.08998 * 109.46689 * 301.85271 * 1 2 3 27 27 H 1.09000 * 109.46411 * 181.85653 * 1 2 3 28 28 H 1.08992 * 109.47030 * 119.99830 * 2 1 3 29 29 H 1.08996 * 109.46971 * 240.00217 * 2 1 3 30 30 H 0.96996 * 119.99970 * 179.97438 * 8 7 5 31 31 H 1.00907 * 111.00167 * 28.66907 * 13 3 2 32 32 H 1.08995 * 110.35054 * 357.69102 * 16 14 13 33 33 H 1.09002 * 110.34694 * 119.96963 * 16 14 13 34 34 H 1.09000 * 110.61098 * 217.49477 * 17 16 14 35 35 H 1.09005 * 110.74639 * 94.57993 * 17 16 14 36 36 H 1.09004 * 109.78431 * 57.92696 * 19 18 17 37 37 H 1.09003 * 109.27197 * 297.46680 * 19 18 17 38 38 H 1.08997 * 109.22950 * 296.72408 * 20 19 18 39 39 H 1.08996 * 109.23187 * 177.35172 * 20 19 18 40 40 H 1.08998 * 109.24657 * 185.96267 * 21 20 19 41 41 H 1.08997 * 109.24531 * 66.55340 * 21 20 19 42 42 H 1.09004 * 109.83452 * 296.61062 * 22 21 20 43 43 H 1.08997 * 109.84039 * 175.64210 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5999 1.9835 0.8378 5 6 3.5411 1.4447 0.1335 6 1 4.1513 1.8876 -0.6398 7 6 4.1354 0.8814 1.2427 8 7 3.3922 0.3417 2.1842 9 14 5.9960 0.8835 1.4079 10 1 6.4292 2.1180 2.1104 11 1 6.4251 -0.3058 2.1868 12 1 6.6129 0.8399 0.0578 13 7 1.6594 2.0965 -1.2591 14 6 1.5246 3.5481 -1.0787 15 1 2.2396 3.9077 -0.3387 16 6 0.0771 3.9106 -0.6597 17 6 -0.4281 4.8781 -1.7629 18 7 0.8108 5.4461 -2.3162 19 6 0.7196 6.0991 -3.6117 20 6 2.1038 6.6614 -3.9697 21 6 3.1549 5.5521 -3.9657 22 6 3.1374 4.7948 -2.6288 23 6 1.7225 4.2752 -2.4133 24 1 1.4263 3.6319 -3.2419 25 1 -0.3633 0.4847 -0.9060 26 1 -0.3632 0.5423 0.8729 27 1 -0.3632 -1.0272 0.0333 28 1 1.8934 -0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 3.8103 -0.0549 2.9644 31 1 0.8104 1.6980 -1.6314 32 1 -0.5436 3.0152 -0.6276 33 1 0.0767 4.4082 0.3101 34 1 -1.0500 5.6619 -1.3305 35 1 -0.9775 4.3343 -2.5315 36 1 -0.0076 6.9099 -3.5659 37 1 0.4124 5.3698 -4.3613 38 1 2.3819 7.4221 -3.2402 39 1 2.0625 7.1134 -4.9606 40 1 4.1411 5.9910 -4.1171 41 1 2.9443 4.8547 -4.7765 42 1 3.4110 5.4698 -1.8177 43 1 3.8363 3.9594 -2.6676 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219245132.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:57 Heat of formation + Delta-G solvation = -7.916005 kcal Electronic energy + Delta-G solvation = -19944.995983 eV Core-core repulsion = 17217.038415 eV Total energy + Delta-G solvation = -2727.957568 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.73642 -36.36075 -34.40580 -32.50602 -31.53368 -29.85411 -28.77342 -26.79351 -25.10471 -22.85681 -22.66926 -21.36150 -19.98917 -19.79361 -19.16692 -16.13875 -15.71398 -15.26596 -14.83256 -14.49589 -14.33870 -13.71242 -13.58590 -13.31050 -13.11547 -12.76018 -12.32754 -12.21577 -12.11858 -11.76226 -11.32031 -11.06707 -11.03700 -10.90477 -10.81707 -10.62846 -10.51578 -10.30737 -10.15662 -10.00779 -9.90317 -9.64176 -9.44078 -9.03187 -8.31316 -8.14396 -7.16672 -5.92900 -3.96512 3.35000 3.41558 3.46091 4.16344 4.48590 4.85304 4.93812 5.04593 5.27616 5.30299 5.35963 5.41656 5.47253 5.59391 5.66154 5.71371 5.84087 5.92636 5.96742 6.02715 6.14951 6.16816 6.19998 6.25057 6.28058 6.30504 6.41114 6.46401 6.57501 6.65204 6.81852 6.84651 7.10691 7.17145 7.23971 7.47271 7.57640 7.81030 7.96881 8.36692 8.44328 8.79873 9.11773 9.68401 11.12480 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021392 B = 0.006906 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.616765 B = 4053.464673 C = 4999.097574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.221 3.779 4 H 0.004 0.996 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.679 5.679 14 C 0.102 3.898 15 H 0.091 0.909 16 C -0.151 4.151 17 C 0.050 3.950 18 N -0.533 5.533 19 C 0.060 3.940 20 C -0.112 4.112 21 C -0.120 4.120 22 C -0.100 4.100 23 C 0.080 3.920 24 H 0.049 0.951 25 H 0.034 0.966 26 H 0.042 0.958 27 H 0.036 0.964 28 H 0.099 0.901 29 H 0.040 0.960 30 H 0.258 0.742 31 H 0.316 0.684 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.033 0.967 36 H 0.067 0.933 37 H 0.027 0.973 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.885 8.586 -9.229 13.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.113 3.887 4 H 0.022 0.978 5 C -0.528 4.528 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.309 5.309 14 C -0.010 4.010 15 H 0.109 0.891 16 C -0.191 4.191 17 C -0.078 4.078 18 N -0.258 5.258 19 C -0.069 4.069 20 C -0.150 4.150 21 C -0.158 4.158 22 C -0.138 4.138 23 C -0.028 4.028 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.118 0.882 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.045 0.955 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.041 8.926 -8.969 13.621 hybrid contribution -0.321 -0.559 0.091 0.651 sum -5.362 8.367 -8.878 13.325 Atomic orbital electron populations 1.21889 0.99711 0.99558 0.99535 1.21790 0.91137 1.00591 1.03044 1.19143 0.95357 0.89734 0.84424 0.97844 1.21224 0.91279 1.36107 1.04216 0.92042 1.24952 0.97982 0.95737 0.95906 1.69875 1.34632 1.39623 1.09644 0.86576 0.85985 0.77296 0.78010 1.20906 1.21459 1.19930 1.60705 1.37050 1.00953 1.32193 1.22013 0.94103 0.89598 0.95242 0.89073 1.23363 0.98711 0.98571 0.98491 1.22720 0.91671 0.96840 0.96602 1.63464 1.10588 1.26172 1.25604 1.21876 0.97516 0.97833 0.89639 1.21562 0.94326 0.98464 1.00650 1.21604 0.98446 0.97452 0.98290 1.21417 0.96019 0.99816 0.96517 1.22353 0.93052 0.89517 0.97894 0.93290 0.94748 0.93858 0.94467 0.88237 0.94153 0.93165 0.86574 0.91682 0.91344 0.91038 0.94879 0.91425 0.95503 0.91424 0.92228 0.92229 0.92704 0.91336 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.72 37.16 0.36 -2.50 16 2 C -0.13 -2.96 5.35 -26.73 -0.14 -3.10 16 3 C 0.22 5.38 1.88 -68.87 -0.13 5.25 16 4 H 0.00 0.10 7.81 -51.93 -0.41 -0.30 16 5 C -0.49 -13.33 8.66 -34.44 -0.30 -13.63 16 6 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -25.45 11.29 55.43 0.63 -24.82 16 9 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 13 N -0.68 -14.07 6.08 -99.71 -0.61 -14.67 16 14 C 0.10 1.92 2.75 -66.53 -0.18 1.74 16 15 H 0.09 1.98 7.64 -51.93 -0.40 1.58 16 16 C -0.15 -2.47 6.71 -24.52 -0.16 -2.63 16 17 C 0.05 0.71 6.74 -2.56 -0.02 0.69 16 18 N -0.53 -7.90 4.83 -224.72 -1.08 -8.99 16 19 C 0.06 0.75 5.88 -4.32 -0.03 0.73 16 20 C -0.11 -1.31 6.07 -26.49 -0.16 -1.47 16 21 C -0.12 -1.54 5.95 -26.48 -0.16 -1.70 16 22 C -0.10 -1.57 5.66 -26.77 -0.15 -1.73 16 23 C 0.08 1.31 2.17 -66.95 -0.15 1.17 16 24 H 0.05 0.84 7.94 -51.93 -0.41 0.43 16 25 H 0.03 0.59 6.51 -51.93 -0.34 0.25 16 26 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 29 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.32 6.09 5.93 -39.29 -0.23 5.86 16 32 H 0.06 1.05 7.59 -51.93 -0.39 0.66 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.03 0.34 8.00 -51.93 -0.42 -0.08 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 325.21 15.07 4.90 4.90 Total: -1.00 -27.39 325.21 -10.44 -37.83 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.94 Total: 5.05 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -1.31 Total: -15.79 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: -1.07 Total: -48.48 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.39 -10.44 -37.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219245132.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.918 kcal (2) G-P(sol) polarization free energy of solvation -27.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds