Wall clock time and date at job start Mon Mar 30 2020 04:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.48972 * 2 1 4 4 C 1.53056 * 109.48587 * 239.93701 * 2 1 3 5 5 N 1.46960 * 109.36304 * 298.43546 * 4 2 1 6 6 C 1.46956 * 110.87806 * 300.68121 * 5 4 2 7 7 H 1.09001 * 109.51078 * 299.34161 * 6 5 4 8 8 C 1.50701 * 109.48547 * 179.28918 * 6 5 4 9 9 H 1.08005 * 120.00008 * 240.10702 * 8 6 5 10 10 C 1.37878 * 120.00284 * 60.11168 * 8 6 5 11 11 N 1.31508 * 120.00112 * 179.97438 * 10 8 6 12 12 Si 1.86803 * 119.99841 * 359.97438 * 10 8 6 13 13 H 1.48498 * 109.47252 * 270.00632 * 12 10 8 14 14 H 1.48500 * 109.46882 * 30.00520 * 12 10 8 15 15 H 1.48494 * 109.46969 * 150.00351 * 12 10 8 16 16 C 1.53047 * 109.36918 * 59.32159 * 6 5 4 17 17 N 1.46948 * 109.48891 * 120.04870 * 2 1 3 18 18 C 1.46905 * 110.99929 * 296.77434 * 17 2 1 19 19 C 1.54267 * 110.03243 * 194.34498 * 18 17 2 20 20 C 1.54973 * 104.15986 * 217.13616 * 19 18 17 21 21 C 1.54894 * 102.77434 * 37.88668 * 20 19 18 22 22 C 1.53875 * 110.03084 * 77.12875 * 18 17 2 23 23 H 1.09007 * 109.46711 * 307.55965 * 1 2 3 24 24 H 1.08996 * 109.47199 * 67.55564 * 1 2 3 25 25 H 1.08998 * 109.47222 * 187.56141 * 1 2 3 26 26 H 1.08998 * 109.46493 * 172.49282 * 3 2 1 27 27 H 1.08996 * 109.46780 * 292.49488 * 3 2 1 28 28 H 1.08996 * 109.46790 * 52.49721 * 3 2 1 29 29 H 1.08999 * 109.48643 * 58.39805 * 4 2 1 30 30 H 1.08999 * 109.48654 * 178.47054 * 4 2 1 31 31 H 1.00899 * 111.00058 * 176.81234 * 5 4 2 32 32 H 0.97002 * 119.99950 * 179.97438 * 11 10 8 33 33 H 1.09003 * 109.49020 * 61.55994 * 16 6 5 34 34 H 1.08997 * 109.49298 * 181.62674 * 16 6 5 35 35 H 1.09003 * 110.01726 * 315.73465 * 18 17 2 36 36 H 1.08998 * 110.48805 * 335.78413 * 19 18 17 37 37 H 1.09000 * 110.48743 * 98.43035 * 19 18 17 38 38 H 1.09004 * 110.71734 * 279.57585 * 20 19 18 39 39 H 1.08990 * 110.92172 * 156.29545 * 20 19 18 40 40 H 1.09003 * 110.48381 * 203.40275 * 21 20 19 41 41 H 1.09002 * 110.48420 * 80.76702 * 21 20 19 42 42 H 1.09009 * 110.03199 * 238.56976 * 22 18 17 43 43 H 1.08996 * 110.03470 * 359.95333 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 6 2.0406 -0.7228 -1.2488 5 7 1.5808 -2.1184 -1.2262 6 6 2.0710 -2.8120 -0.0269 7 1 3.1610 -2.8125 -0.0267 8 6 1.5677 -4.2325 -0.0267 9 1 0.9459 -4.5850 0.7829 10 6 1.9012 -5.0823 -1.0601 11 7 1.4624 -6.3220 -1.0596 12 14 2.9763 -4.4725 -2.4608 13 1 2.1187 -3.9067 -3.5329 14 1 3.8968 -3.4218 -1.9569 15 1 3.7681 -5.6043 -3.0058 16 6 1.5605 -2.0893 1.2218 17 7 2.0203 -0.6937 1.1991 18 6 1.6135 0.0145 2.4202 19 6 2.4204 -0.5070 3.6272 20 6 1.4017 -0.5019 4.7950 21 6 0.0895 -0.9533 4.1068 22 6 0.1321 -0.2688 2.7251 23 1 -0.3633 0.6265 0.8147 24 1 -0.3633 0.3923 -0.9498 25 1 -0.3633 -1.0187 0.1352 26 1 3.1222 1.4448 0.1343 27 1 1.7911 1.9160 -0.9495 28 1 1.5719 1.9935 0.8153 29 1 1.6543 -0.2271 -2.1393 30 1 3.1302 -0.6992 -1.2626 31 1 1.8601 -2.6049 -2.0649 32 1 1.6967 -6.9197 -1.7868 33 1 0.4708 -2.1129 1.2357 34 1 1.9467 -2.5850 2.1124 35 1 1.7718 1.0863 2.3003 36 1 2.7787 -1.5189 3.4381 37 1 3.2549 0.1597 3.8450 38 1 1.2954 0.5006 5.2096 39 1 1.6947 -1.2098 5.5702 40 1 -0.7760 -0.6124 4.6750 41 1 0.0708 -2.0374 3.9951 42 1 -0.4285 0.6657 2.7539 43 1 -0.2852 -0.9310 1.9666 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221593866.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:27 Heat of formation + Delta-G solvation = -0.137430 kcal Electronic energy + Delta-G solvation = -20769.482923 eV Core-core repulsion = 18041.862659 eV Total energy + Delta-G solvation = -2727.620263 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.58321 -38.22802 -35.95541 -34.06101 -33.36611 -30.21029 -29.51485 -28.54360 -27.91997 -25.79345 -25.22126 -22.35484 -21.45198 -20.78227 -19.05655 -18.75139 -17.77598 -16.94043 -16.65450 -16.18197 -15.74820 -15.55276 -14.92238 -14.64650 -14.51932 -14.41039 -14.31276 -13.84940 -13.20249 -12.96921 -12.89412 -12.70477 -12.63477 -12.37831 -12.11176 -12.00552 -11.94494 -11.85217 -11.75689 -11.48747 -11.41722 -11.27898 -11.14205 -10.92328 -10.78637 -9.26698 -8.98941 -8.35911 -6.41105 1.20407 1.26582 1.33552 2.22423 2.91083 3.00287 3.57645 3.76679 3.79000 3.88661 4.13000 4.20305 4.23929 4.41242 4.48293 4.58623 4.63633 4.65004 4.72946 4.74398 4.78717 4.80825 4.85268 4.90779 4.95661 5.02251 5.05800 5.11667 5.13583 5.17704 5.26107 5.28030 5.35467 5.46261 5.54401 5.54894 5.63631 6.17119 6.24172 6.35268 6.41882 6.54586 6.72126 7.24700 8.80841 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024281 B = 0.008248 C = 0.006935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.886693 B = 3394.070220 C = 4036.806844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.107 3.893 3 C -0.130 4.130 4 C 0.056 3.944 5 N -0.689 5.689 6 C 0.191 3.809 7 H -0.015 1.015 8 C -0.510 4.510 9 H 0.038 0.962 10 C 0.021 3.979 11 N -0.941 5.941 12 Si 0.939 3.061 13 H -0.255 1.255 14 H -0.263 1.263 15 H -0.287 1.287 16 C 0.090 3.910 17 N -0.532 5.532 18 C 0.077 3.923 19 C -0.117 4.117 20 C -0.115 4.115 21 C -0.125 4.125 22 C -0.165 4.165 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.019 0.981 31 H 0.313 0.687 32 H 0.268 0.732 33 H 0.038 0.962 34 H 0.057 0.943 35 H 0.102 0.898 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.041 0.959 42 H 0.078 0.922 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.406 18.192 5.823 19.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.017 3.983 3 C -0.187 4.187 4 C -0.073 4.073 5 N -0.326 5.326 6 C 0.083 3.917 7 H 0.002 0.998 8 C -0.550 4.550 9 H 0.056 0.944 10 C -0.177 4.177 11 N -0.581 5.581 12 Si 0.765 3.235 13 H -0.180 1.180 14 H -0.188 1.188 15 H -0.214 1.214 16 C -0.038 4.038 17 N -0.255 5.255 18 C -0.031 4.031 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.163 4.163 22 C -0.204 4.204 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.037 0.963 31 H 0.134 0.866 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.332 18.183 5.978 19.143 hybrid contribution 0.379 -1.027 -1.036 1.507 sum 0.710 17.156 4.943 17.868 Atomic orbital electron populations 1.22546 0.96159 1.01379 1.02161 1.21128 0.93502 0.94480 0.89165 1.21835 1.01461 0.92499 1.02944 1.22219 0.96864 0.89752 0.98499 1.61191 1.64068 1.02558 1.04744 1.19398 0.92210 0.91489 0.88589 0.99783 1.21196 1.31493 0.94609 1.07656 0.94351 1.25783 0.96817 0.94710 1.00437 1.70019 1.47160 1.06819 1.34073 0.85948 0.79344 0.78037 0.80126 1.18006 1.18819 1.21430 1.21832 0.97580 0.87847 0.96534 1.62559 1.59019 1.01604 1.02342 1.22539 0.92527 0.98916 0.89101 1.22434 0.98192 1.00926 0.93973 1.22464 0.94004 1.02007 0.96793 1.22344 0.98745 0.99228 0.96007 1.23195 0.98223 1.01149 0.97816 0.90956 0.92336 0.93897 0.92234 0.90749 0.90909 0.89587 0.96250 0.86583 0.92306 0.94453 0.92503 0.88042 0.93368 0.90440 0.89709 0.91463 0.90587 0.93972 0.90384 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.88 6.60 71.98 0.48 -4.40 16 2 C 0.11 3.26 0.68 3.54 0.00 3.26 16 3 C -0.13 -2.89 7.97 71.98 0.57 -2.32 16 4 C 0.06 2.00 5.42 86.31 0.47 2.47 16 5 N -0.69 -30.96 5.93 -495.00 -2.94 -33.90 16 6 C 0.19 9.44 2.06 44.17 0.09 9.53 16 7 H -0.02 -0.80 7.20 -2.39 -0.02 -0.82 16 8 C -0.51 -30.07 9.34 25.60 0.24 -29.83 16 9 H 0.04 2.48 7.99 -2.91 -0.02 2.46 16 10 C 0.02 1.26 5.47 84.66 0.46 1.72 16 11 N -0.94 -59.24 13.96 21.45 0.30 -58.94 16 12 Si 0.94 45.26 24.66 68.60 1.69 46.95 16 13 H -0.25 -11.46 6.96 99.48 0.69 -10.76 16 14 H -0.26 -12.30 6.54 99.48 0.65 -11.65 16 15 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 16 C 0.09 3.79 3.77 86.31 0.33 4.12 16 17 N -0.53 -17.87 4.46 -817.11 -3.64 -21.51 16 18 C 0.08 2.04 2.64 45.64 0.12 2.16 16 19 C -0.12 -2.98 6.33 31.70 0.20 -2.78 16 20 C -0.11 -2.44 6.91 31.92 0.22 -2.22 16 21 C -0.13 -3.06 6.83 31.67 0.22 -2.84 16 22 C -0.17 -4.27 3.94 31.32 0.12 -4.15 16 23 H 0.07 1.82 5.46 -2.38 -0.01 1.81 16 24 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 25 H 0.04 1.59 5.28 -2.39 -0.01 1.57 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 1.37 6.43 -2.39 -0.02 1.36 16 29 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.02 0.71 8.14 -2.39 -0.02 0.70 16 31 H 0.31 14.48 4.00 -89.69 -0.36 14.13 16 32 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 33 H 0.04 1.66 4.40 -2.39 -0.01 1.65 16 34 H 0.06 2.49 6.50 -2.39 -0.02 2.47 16 35 H 0.10 2.28 5.71 -2.39 -0.01 2.26 16 36 H 0.05 1.50 6.42 -2.39 -0.02 1.49 16 37 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.08 1.68 7.56 -2.38 -0.02 1.66 16 43 H 0.06 1.99 3.48 -2.39 -0.01 1.98 16 Total: -1.00 -65.65 297.74 -0.50 -66.15 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.56 Total: 26.52 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 3.52 Total: -25.28 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -6.28 Total: -114.34 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.69 Total: 46.95 kcal Total: -65.65 -0.50 -66.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221593866.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.014 kcal (2) G-P(sol) polarization free energy of solvation -65.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds