Wall clock time and date at job start Mon Mar 30 2020 04:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.50342 * 2 1 4 4 C 1.53055 * 109.48852 * 120.05261 * 2 1 3 5 5 N 1.46953 * 109.36344 * 61.56998 * 4 2 1 6 6 C 1.46897 * 110.99918 * 183.18892 * 5 4 2 7 7 C 1.54270 * 110.02972 * 180.62889 * 6 5 4 8 8 C 1.54898 * 104.19254 * 217.10235 * 7 6 5 9 9 C 1.54890 * 102.74569 * 37.94626 * 8 7 6 10 10 C 1.53876 * 110.03229 * 63.46207 * 6 5 4 11 11 C 1.46961 * 110.88281 * 59.31842 * 5 4 2 12 12 C 1.53056 * 109.38036 * 300.67123 * 11 5 4 13 13 H 1.09003 * 109.48470 * 298.43886 * 12 11 5 14 14 C 1.50701 * 109.48550 * 178.37882 * 12 11 5 15 15 H 1.08002 * 120.00260 * 359.97438 * 14 12 11 16 16 C 1.37874 * 119.99704 * 179.97438 * 14 12 11 17 17 N 1.31514 * 120.00329 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 120.00005 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46748 * 89.99902 * 18 16 14 20 20 H 1.48498 * 109.47539 * 210.00335 * 18 16 14 21 21 H 1.48504 * 109.47036 * 330.00842 * 18 16 14 22 22 N 1.46955 * 109.48944 * 239.94830 * 2 1 3 23 23 H 1.08997 * 109.47133 * 299.94604 * 1 2 3 24 24 H 1.09003 * 109.46793 * 59.94702 * 1 2 3 25 25 H 1.08997 * 109.46773 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46472 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47227 * 300.04784 * 3 2 1 28 28 H 1.09000 * 109.46871 * 60.05623 * 3 2 1 29 29 H 1.08997 * 109.48868 * 301.60079 * 4 2 1 30 30 H 1.09004 * 109.48656 * 181.53357 * 4 2 1 31 31 H 1.09001 * 110.01960 * 302.06699 * 6 5 4 32 32 H 1.09002 * 110.48585 * 335.77970 * 7 6 5 33 33 H 1.09000 * 110.48760 * 98.42762 * 7 6 5 34 34 H 1.08999 * 110.75607 * 279.62883 * 8 7 6 35 35 H 1.09001 * 110.75095 * 156.25432 * 8 7 6 36 36 H 1.09001 * 110.48014 * 203.37926 * 9 8 7 37 37 H 1.08998 * 110.60040 * 80.79047 * 9 8 7 38 38 H 1.09004 * 110.02784 * 238.56409 * 10 6 5 39 39 H 1.08993 * 110.02967 * 359.95286 * 10 6 5 40 40 H 1.08997 * 109.48597 * 60.64909 * 11 5 4 41 41 H 1.08993 * 109.48771 * 180.69051 * 11 5 4 42 42 H 0.96997 * 120.00647 * 179.97438 * 17 16 14 43 43 H 1.00907 * 110.99422 * 175.48854 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4423 0.0000 4 6 2.0407 -0.7226 1.2489 5 7 1.5810 -2.1182 1.2265 6 6 1.9878 -2.8261 2.4477 7 6 1.5080 -4.2913 2.3937 8 6 1.1012 -4.6117 3.8536 9 6 0.4499 -3.2879 4.3252 10 6 1.3150 -2.1881 3.6757 11 6 2.0713 -2.8120 0.0274 12 6 1.5607 -2.0899 -1.2218 13 1 0.4710 -2.1137 -1.2356 14 6 2.0947 -2.7759 -2.4527 15 1 2.7347 -3.6404 -2.3544 16 6 1.7663 -2.3001 -3.7043 17 7 0.9874 -1.2472 -3.8241 18 14 2.4288 -3.1500 -5.2302 19 1 1.4807 -4.2104 -5.6571 20 1 2.5844 -2.1561 -6.3224 21 1 3.7478 -3.7596 -4.9239 22 7 2.0203 -0.6938 -1.1991 23 1 -0.3633 0.5130 0.8904 24 1 -0.3633 0.5147 -0.8895 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1309 1.4415 -0.0005 27 1 1.6771 1.9565 -0.8895 28 1 1.6786 1.9560 0.8905 29 1 1.6544 -0.2267 2.1394 30 1 3.1304 -0.6988 1.2627 31 1 3.0719 -2.7912 2.5556 32 1 0.6498 -4.3875 1.7287 33 1 2.3174 -4.9461 2.0708 34 1 1.9785 -4.8468 4.4563 35 1 0.3805 -5.4288 3.8832 36 1 0.4870 -3.2105 5.4118 37 1 -0.5797 -3.2206 3.9738 38 1 2.0726 -1.8444 4.3800 39 1 0.6873 -1.3528 3.3656 40 1 3.1613 -2.8120 0.0274 41 1 1.7077 -3.8395 0.0276 42 1 0.7566 -0.9122 -4.7046 43 1 3.0263 -0.6434 -1.2600 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221594136.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:10 Heat of formation + Delta-G solvation = -19.419815 kcal Electronic energy + Delta-G solvation = -20277.063240 eV Core-core repulsion = 17548.606830 eV Total energy + Delta-G solvation = -2728.456410 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.88183 -38.53823 -35.18007 -34.77120 -32.62518 -29.83871 -28.69178 -28.25902 -27.94802 -26.89267 -24.38359 -22.41785 -21.14980 -20.46935 -19.66642 -18.47720 -17.25771 -16.64640 -16.41078 -15.99876 -15.71914 -15.16372 -14.95411 -14.89862 -14.25007 -14.14897 -13.99357 -13.14802 -12.91936 -12.85916 -12.79038 -12.68641 -12.60174 -12.44926 -12.20884 -12.01481 -11.91001 -11.80926 -11.75019 -11.66818 -11.48288 -11.33275 -11.27958 -10.83169 -10.45041 -9.20522 -8.46038 -7.93325 -6.14833 1.43601 1.45004 1.53696 2.47674 3.02825 3.25794 3.65917 3.76993 3.83252 4.07600 4.16434 4.30660 4.31368 4.46245 4.50974 4.55577 4.59624 4.63634 4.70026 4.80422 4.81742 4.89425 4.94243 4.97992 5.02719 5.09088 5.12669 5.20170 5.22469 5.23500 5.28050 5.33461 5.51383 5.51663 5.60970 5.66120 5.77285 6.17299 6.33032 6.38916 6.71707 7.18086 7.20133 7.56967 9.08941 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.023097 B = 0.007084 C = 0.005817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.983303 B = 3951.765264 C = 4812.155848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.100 3.900 3 C -0.124 4.124 4 C 0.039 3.961 5 N -0.529 5.529 6 C 0.074 3.926 7 C -0.119 4.119 8 C -0.115 4.115 9 C -0.115 4.115 10 C -0.112 4.112 11 C 0.045 3.955 12 C 0.233 3.767 13 H 0.014 0.986 14 C -0.557 4.557 15 H 0.045 0.955 16 C 0.040 3.960 17 N -0.873 5.873 18 Si 0.945 3.055 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.273 1.273 22 N -0.654 5.654 23 H 0.064 0.936 24 H 0.031 0.969 25 H 0.040 0.960 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.015 0.985 31 H 0.025 0.975 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.003 0.997 41 H 0.060 0.940 42 H 0.254 0.746 43 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.941 -0.352 15.421 15.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.008 3.992 3 C -0.182 4.182 4 C -0.091 4.091 5 N -0.253 5.253 6 C -0.035 4.035 7 C -0.157 4.157 8 C -0.153 4.153 9 C -0.153 4.153 10 C -0.150 4.150 11 C -0.085 4.085 12 C 0.125 3.875 13 H 0.032 0.968 14 C -0.597 4.597 15 H 0.063 0.937 16 C -0.164 4.164 17 N -0.509 5.509 18 Si 0.771 3.229 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.198 1.198 22 N -0.283 5.283 23 H 0.083 0.917 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.021 0.979 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.188 0.026 14.869 14.871 hybrid contribution 1.856 -0.879 -0.708 2.172 sum 1.668 -0.853 14.162 14.285 Atomic orbital electron populations 1.21482 0.94380 1.00809 0.99678 1.21145 0.95816 0.94133 0.88104 1.21681 1.00293 0.94371 1.01877 1.22832 0.96163 0.89741 1.00371 1.62333 1.59396 1.01972 1.01599 1.22435 0.96188 0.94467 0.90365 1.22430 1.00459 0.94318 0.98443 1.22443 1.00755 0.97869 0.94211 1.22283 0.98726 0.93804 1.00451 1.22187 0.99165 0.98815 0.94849 1.22732 0.95146 0.98590 0.91990 1.18873 0.94671 0.84394 0.89562 0.96831 1.21264 1.32717 1.13719 0.91954 0.93670 1.25590 0.94736 0.94961 1.01093 1.70242 1.34770 1.22929 1.22910 0.85808 0.78776 0.78311 0.80019 1.20424 1.21133 1.19781 1.60949 1.13561 1.16893 1.36896 0.91745 0.94999 0.94095 0.93151 0.93299 0.90559 0.89363 0.96713 0.95659 0.92295 0.92613 0.90597 0.90695 0.89949 0.92101 0.90957 0.91479 0.97895 0.92127 0.93714 0.87263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.15 8.13 71.98 0.58 -3.56 16 2 C 0.10 3.81 0.95 3.54 0.00 3.81 16 3 C -0.12 -3.98 8.73 71.98 0.63 -3.35 16 4 C 0.04 1.32 4.07 86.31 0.35 1.67 16 5 N -0.53 -19.07 3.79 -866.22 -3.28 -22.35 16 6 C 0.07 2.18 2.67 45.64 0.12 2.31 16 7 C -0.12 -3.30 5.12 31.67 0.16 -3.14 16 8 C -0.12 -2.38 6.91 31.89 0.22 -2.16 16 9 C -0.12 -2.31 6.83 31.67 0.22 -2.10 16 10 C -0.11 -2.65 5.92 31.32 0.19 -2.46 16 11 C 0.05 1.96 4.53 86.31 0.39 2.35 16 12 C 0.23 11.87 2.07 44.17 0.09 11.96 16 13 H 0.01 0.80 6.35 -2.39 -0.02 0.79 16 14 C -0.56 -31.14 8.69 25.60 0.22 -30.92 16 15 H 0.05 2.51 7.74 -2.91 -0.02 2.49 16 16 C 0.04 2.27 5.39 84.65 0.46 2.72 16 17 N -0.87 -51.37 12.78 21.45 0.27 -51.10 16 18 Si 0.94 44.22 29.54 68.60 2.03 46.25 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 20 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 N -0.65 -31.03 5.32 -451.56 -2.40 -33.43 16 23 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.04 1.79 5.94 -2.39 -0.01 1.78 16 26 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.09 2.58 6.46 -2.39 -0.02 2.56 16 30 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 1.89 7.46 -2.39 -0.02 1.87 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.07 1.71 6.64 -2.39 -0.02 1.69 16 40 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.06 2.64 6.54 -2.39 -0.02 2.63 16 42 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 43 H 0.31 14.92 8.70 -89.69 -0.78 14.14 16 Total: -1.00 -60.60 320.87 0.44 -60.17 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.18 Total: 23.34 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 3.64 Total: -22.88 kcal Atomic # 7 Polarization: -101.46 SS G_CDS: -5.41 Total: -106.87 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -60.60 0.44 -60.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221594136.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.748 kcal (2) G-P(sol) polarization free energy of solvation -60.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds