Wall clock time and date at job start Mon Mar 30 2020 04:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.50828 * 2 1 4 4 C 1.53056 * 109.49067 * 120.05778 * 2 1 3 5 5 N 1.46957 * 109.36272 * 178.37047 * 4 2 1 6 6 C 1.46907 * 110.99669 * 176.81142 * 5 4 2 7 7 C 1.54261 * 110.03003 * 297.16582 * 6 5 4 8 8 C 1.54895 * 104.19402 * 217.10419 * 7 6 5 9 9 C 1.54886 * 102.74636 * 37.94274 * 8 7 6 10 10 C 1.53868 * 110.03089 * 179.97438 * 6 5 4 11 11 C 1.46954 * 110.87842 * 300.67577 * 5 4 2 12 12 C 1.53046 * 109.36715 * 59.32473 * 11 5 4 13 13 H 1.09002 * 109.48705 * 61.56454 * 12 11 5 14 14 C 1.50701 * 109.49230 * 181.60810 * 12 11 5 15 15 H 1.07996 * 119.99629 * 0.02562 * 14 12 11 16 16 C 1.37871 * 120.00012 * 180.02562 * 14 12 11 17 17 N 1.31512 * 120.00415 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99977 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.47028 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47198 * 119.99985 * 18 16 14 21 21 H 1.48498 * 109.47389 * 240.00305 * 18 16 14 22 22 N 1.46953 * 109.36554 * 301.59781 * 12 11 5 23 23 H 1.08997 * 109.46636 * 299.94016 * 1 2 3 24 24 H 1.09002 * 109.47059 * 59.94346 * 1 2 3 25 25 H 1.09004 * 109.46803 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47283 * 180.02562 * 3 2 1 27 27 H 1.08991 * 109.47174 * 300.05556 * 3 2 1 28 28 H 1.09008 * 109.46659 * 60.05706 * 3 2 1 29 29 H 1.09000 * 109.48442 * 298.33466 * 4 2 1 30 30 H 1.09002 * 109.48876 * 58.39935 * 4 2 1 31 31 H 1.08996 * 110.01562 * 58.60559 * 6 5 4 32 32 H 1.08999 * 110.48869 * 335.78239 * 7 6 5 33 33 H 1.08997 * 110.49271 * 98.42952 * 7 6 5 34 34 H 1.08992 * 110.75763 * 279.62967 * 8 7 6 35 35 H 1.09006 * 110.75351 * 156.25517 * 8 7 6 36 36 H 1.08997 * 110.48537 * 203.37683 * 9 8 7 37 37 H 1.09002 * 110.48741 * 80.73907 * 9 8 7 38 38 H 1.09003 * 110.03457 * 238.56841 * 10 6 5 39 39 H 1.08996 * 110.03472 * 0.02562 * 10 6 5 40 40 H 1.09010 * 109.48735 * 179.29625 * 11 5 4 41 41 H 1.09004 * 109.49153 * 299.33283 * 11 5 4 42 42 H 0.96993 * 120.00693 * 179.97438 * 17 16 14 43 43 H 1.00903 * 111.00164 * 295.45407 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 2.0407 -0.7227 1.2488 5 7 3.5097 -0.7553 1.2264 6 6 4.0412 -1.3753 2.4476 7 6 3.6500 -0.5344 3.6803 8 6 4.8877 -0.6214 4.6076 9 6 6.0688 -0.5701 3.6069 10 6 5.5790 -1.3984 2.4006 11 6 3.9999 -1.4490 0.0273 12 6 3.4893 -0.7265 -1.2215 13 1 3.8756 0.2927 -1.2354 14 6 3.9577 -1.4584 -2.4528 15 1 4.5590 -2.3501 -2.3548 16 6 3.6185 -0.9896 -3.7042 17 7 2.8866 0.0965 -3.8235 18 14 4.1996 -1.8965 -5.2304 19 1 5.0034 -3.0785 -4.8279 20 1 3.0232 -2.3425 -6.0192 21 1 5.0349 -0.9890 -6.0575 22 7 2.0203 -0.6938 -1.1992 23 1 -0.3632 0.5129 0.8905 24 1 -0.3633 0.5147 -0.8895 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1310 1.4415 -0.0005 27 1 1.6771 1.9565 -0.8894 28 1 1.6787 1.9559 0.8906 29 1 1.7022 -0.1930 2.1393 30 1 1.6544 -1.7419 1.2627 31 1 3.6557 -2.3897 2.5491 32 1 3.4610 0.4997 3.3924 33 1 2.7751 -0.9607 4.1710 34 1 4.8907 -1.5604 5.1608 35 1 4.9209 0.2294 5.2883 36 1 6.9589 -1.0224 4.0439 37 1 6.2704 0.4583 3.3071 38 1 5.9396 -2.4240 2.4804 39 1 5.9310 -0.9493 1.4719 40 1 5.0900 -1.4491 0.0273 41 1 3.6363 -2.4767 0.0274 42 1 2.6482 0.4265 -4.7039 43 1 1.6369 -1.6252 -1.2602 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221594197.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:13 Heat of formation + Delta-G solvation = -1.576154 kcal Electronic energy + Delta-G solvation = -20276.781169 eV Core-core repulsion = 17549.098517 eV Total energy + Delta-G solvation = -2727.682651 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.40806 -37.23794 -33.43285 -33.16560 -30.74244 -28.71988 -27.28978 -26.73346 -26.41271 -25.05867 -22.82163 -20.90781 -19.98610 -19.08696 -18.02427 -16.59801 -15.90648 -15.32538 -14.52637 -14.44445 -14.11909 -13.92898 -13.32923 -13.21725 -13.11883 -12.74441 -12.18603 -11.64372 -11.54564 -11.23977 -11.16348 -11.06545 -10.95709 -10.92666 -10.87579 -10.66817 -10.57446 -10.52682 -10.42697 -10.21762 -10.14341 -9.73538 -9.53301 -8.83381 -8.34447 -7.69859 -6.68945 -5.82816 -3.96989 3.34901 3.43497 3.46200 4.38408 4.56074 4.73903 4.82469 5.10797 5.22790 5.54387 5.55716 5.63453 5.64468 5.69280 5.77369 5.83870 5.90969 5.91705 6.00746 6.02276 6.09322 6.14970 6.19675 6.28044 6.34222 6.39655 6.43066 6.45848 6.53067 6.64406 6.70642 6.78165 6.92654 7.06770 7.26333 7.49691 7.79286 7.83949 7.97900 8.30830 8.69141 9.02300 9.19641 9.71158 11.21076 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.023316 B = 0.007057 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.609120 B = 3966.906916 C = 4813.242051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.107 3.893 3 C -0.116 4.116 4 C 0.033 3.967 5 N -0.525 5.525 6 C 0.079 3.921 7 C -0.115 4.115 8 C -0.123 4.123 9 C -0.119 4.119 10 C -0.122 4.122 11 C 0.025 3.975 12 C 0.226 3.774 13 H 0.052 0.948 14 C -0.539 4.539 15 H 0.052 0.948 16 C 0.085 3.915 17 N -0.843 5.843 18 Si 0.880 3.120 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.285 1.285 22 N -0.637 5.637 23 H 0.044 0.956 24 H 0.063 0.937 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.031 0.969 29 H 0.062 0.938 30 H 0.017 0.983 31 H 0.030 0.970 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.014 0.986 42 H 0.254 0.746 43 H 0.316 0.684 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.257 -0.547 13.384 13.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.014 3.986 3 C -0.174 4.174 4 C -0.097 4.097 5 N -0.249 5.249 6 C -0.030 4.030 7 C -0.153 4.153 8 C -0.161 4.161 9 C -0.157 4.157 10 C -0.159 4.159 11 C -0.104 4.104 12 C 0.119 3.881 13 H 0.069 0.931 14 C -0.578 4.578 15 H 0.070 0.930 16 C -0.122 4.122 17 N -0.477 5.477 18 Si 0.708 3.292 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.212 1.212 22 N -0.266 5.266 23 H 0.063 0.937 24 H 0.082 0.918 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.032 0.968 42 H 0.064 0.936 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.288 0.642 12.811 12.830 hybrid contribution 0.109 -2.210 -0.108 2.215 sum 0.397 -1.568 12.703 12.805 Atomic orbital electron populations 1.21761 0.95482 1.00694 1.01109 1.20986 0.93240 0.95650 0.88717 1.21593 1.02206 0.94232 0.99334 1.22893 0.88211 0.98223 1.00421 1.62351 1.07690 1.53279 1.01565 1.22259 0.94787 0.95113 0.90820 1.22416 0.96955 1.01201 0.94683 1.22457 0.95312 1.00995 0.97325 1.22302 0.97272 1.00481 0.95600 1.22281 0.94609 0.99548 0.99507 1.23179 1.00193 0.95278 0.91736 1.19197 0.83719 0.96474 0.88740 0.93070 1.20954 1.34359 1.12097 0.90415 0.93012 1.24913 0.94279 0.94571 0.98387 1.70119 1.34413 1.20846 1.22367 0.86764 0.78456 0.80005 0.83968 1.20053 1.21168 1.21166 1.61140 1.10383 1.21110 1.33973 0.93670 0.91767 0.93851 0.91570 0.92651 0.94951 0.91998 0.96487 0.95240 0.90416 0.92632 0.92073 0.91889 0.92300 0.91479 0.92503 0.90027 0.91344 0.96768 0.93598 0.86724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.73 37.16 0.32 -1.91 16 2 C 0.11 2.06 0.95 -131.54 -0.12 1.93 16 3 C -0.12 -2.27 8.12 37.16 0.30 -1.97 16 4 C 0.03 0.58 4.14 -3.76 -0.02 0.57 16 5 N -0.52 -9.55 3.81 -225.15 -0.86 -10.41 16 6 C 0.08 1.23 2.67 -66.60 -0.18 1.05 16 7 C -0.11 -1.51 5.22 -25.07 -0.13 -1.65 16 8 C -0.12 -1.38 6.91 -24.74 -0.17 -1.55 16 9 C -0.12 -1.43 6.83 -25.05 -0.17 -1.60 16 10 C -0.12 -1.75 5.91 -25.59 -0.15 -1.90 16 11 C 0.03 0.53 4.50 -3.77 -0.02 0.51 16 12 C 0.23 5.55 2.07 -68.81 -0.14 5.40 16 13 H 0.05 1.41 6.34 -51.93 -0.33 1.08 16 14 C -0.54 -14.60 8.69 -34.44 -0.30 -14.90 16 15 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 16 C 0.09 2.35 5.39 -17.82 -0.10 2.26 16 17 N -0.84 -24.14 12.78 55.43 0.71 -23.43 16 18 Si 0.88 21.14 29.54 -169.99 -5.02 16.12 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 22 N -0.64 -14.75 5.32 -94.11 -0.50 -15.26 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.42 5.94 -51.93 -0.31 1.11 16 27 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.06 1.00 7.00 -51.93 -0.36 0.64 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 1.11 7.91 -51.93 -0.41 0.70 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 1.33 6.11 -51.93 -0.32 1.01 16 40 H 0.07 1.43 6.01 -51.92 -0.31 1.12 16 41 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.32 7.41 8.70 -39.29 -0.34 7.07 16 LS Contribution 320.94 15.07 4.84 4.84 Total: -1.00 -27.49 320.94 -9.55 -37.04 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -7.84 Total: 4.86 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -0.87 Total: -13.77 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.65 Total: -49.09 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.49 -9.55 -37.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221594197.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.467 kcal (2) G-P(sol) polarization free energy of solvation -27.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds