Wall clock time and date at job start Mon Mar 30 2020 04:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.49000 * 2 1 4 4 C 1.53047 * 109.49198 * 120.04837 * 2 1 3 5 5 N 1.46960 * 109.36383 * 61.56194 * 4 2 1 6 6 C 1.46963 * 110.87905 * 59.32303 * 5 4 2 7 7 C 1.53047 * 109.36353 * 300.67715 * 6 5 4 8 8 H 1.08996 * 109.49134 * 298.43712 * 7 6 5 9 9 C 1.50700 * 109.50461 * 178.37891 * 7 6 5 10 10 H 1.08004 * 120.00074 * 245.79199 * 9 7 6 11 11 C 1.37877 * 119.99566 * 65.79737 * 9 7 6 12 12 N 1.31516 * 120.00558 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 119.99666 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47336 * 59.99808 * 13 11 9 15 15 H 1.48499 * 109.47346 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47259 * 299.99880 * 13 11 9 17 17 N 1.46960 * 109.36383 * 58.40389 * 7 6 5 18 18 C 1.46904 * 110.99719 * 176.81297 * 17 7 6 19 19 C 1.54262 * 110.03288 * 30.41696 * 18 17 7 20 20 C 1.54968 * 104.15750 * 217.13525 * 19 18 17 21 21 C 1.54888 * 102.77747 * 37.89124 * 20 19 18 22 22 C 1.53877 * 110.03006 * 273.19620 * 18 17 7 23 23 H 1.09006 * 109.46631 * 294.62637 * 1 2 3 24 24 H 1.08998 * 109.47113 * 54.62720 * 1 2 3 25 25 H 1.09000 * 109.47372 * 174.62734 * 1 2 3 26 26 H 1.08999 * 109.47187 * 187.53410 * 3 2 1 27 27 H 1.09002 * 109.47050 * 307.53857 * 3 2 1 28 28 H 1.09004 * 109.46753 * 67.53557 * 3 2 1 29 29 H 1.08996 * 109.49134 * 181.52870 * 4 2 1 30 30 H 1.08998 * 109.49103 * 301.59578 * 4 2 1 31 31 H 1.00902 * 110.99836 * 183.18981 * 5 4 2 32 32 H 1.09000 * 109.48662 * 180.70881 * 6 5 4 33 33 H 1.08992 * 109.50507 * 60.65745 * 6 5 4 34 34 H 0.96991 * 119.99878 * 180.02562 * 12 11 9 35 35 H 1.09000 * 110.01512 * 151.81080 * 18 17 7 36 36 H 1.08999 * 110.48978 * 335.78128 * 19 18 17 37 37 H 1.08996 * 110.48926 * 98.43219 * 19 18 17 38 38 H 1.08997 * 110.72472 * 279.57247 * 20 19 18 39 39 H 1.09000 * 110.92552 * 156.29269 * 20 19 18 40 40 H 1.08999 * 110.48983 * 203.40282 * 21 20 19 41 41 H 1.09004 * 110.60484 * 80.81510 * 21 20 19 42 42 H 1.08990 * 110.03247 * 238.57289 * 22 18 17 43 43 H 1.09003 * 110.02889 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0407 -0.7224 1.2489 5 7 1.5809 -2.1181 1.2267 6 6 2.0711 -2.8121 0.0276 7 6 1.5605 -2.0896 -1.2213 8 1 0.4708 -2.1133 -1.2351 9 6 2.0940 -2.7753 -2.4527 10 1 2.7864 -2.2589 -3.1011 11 6 1.6981 -4.0617 -2.7515 12 7 0.8553 -4.6907 -1.9617 13 14 2.3588 -4.9113 -4.2783 14 1 3.8386 -5.0020 -4.1931 15 1 1.7844 -6.2775 -4.3723 16 1 1.9793 -4.1302 -5.4829 17 7 2.0203 -0.6940 -1.1991 18 6 1.6133 0.0138 -2.4204 19 6 0.2889 -0.5707 -2.9534 20 6 0.4501 -0.5312 -4.4941 21 6 1.9413 -0.9001 -4.6921 22 6 2.6636 -0.1951 -3.5254 23 1 -0.3633 0.4283 0.9343 24 1 -0.3633 0.5949 -0.8379 25 1 -0.3634 -1.0231 -0.0962 26 1 3.1221 1.4449 -0.1347 27 1 1.5714 1.9937 -0.8149 28 1 1.7915 1.9158 0.9497 29 1 3.1303 -0.6988 1.2627 30 1 1.6546 -0.2265 2.1393 31 1 1.8604 -2.6042 2.0655 32 1 1.7072 -3.8395 0.0278 33 1 3.1611 -2.8124 0.0274 34 1 0.5771 -5.5958 -2.1718 35 1 1.4956 1.0775 -2.2134 36 1 0.1591 -1.5969 -2.6098 37 1 -0.5535 0.0466 -2.6413 38 1 0.2451 0.4682 -4.8779 39 1 -0.1965 -1.2671 -4.9722 40 1 2.3038 -0.5233 -5.6485 41 1 2.0809 -1.9794 -4.6308 42 1 3.0548 0.7672 -3.8553 43 1 3.4750 -0.8220 -3.1556 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221594948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:05 Heat of formation + Delta-G solvation = 29.459299 kcal Electronic energy + Delta-G solvation = -21397.829409 eV Core-core repulsion = 18671.492556 eV Total energy + Delta-G solvation = -2726.336853 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.78720 -36.49002 -33.77242 -32.68369 -31.02939 -28.21579 -27.51619 -26.53025 -25.91831 -25.13044 -22.77400 -20.78101 -19.64037 -18.96679 -17.15161 -16.73143 -15.54542 -15.28568 -14.60352 -14.34496 -13.95403 -13.60665 -13.17140 -12.98272 -12.70651 -12.51679 -12.28871 -11.81531 -11.69492 -11.33363 -11.07061 -10.96260 -10.72045 -10.63828 -10.44128 -10.25663 -10.21511 -10.08721 -10.01014 -9.77421 -9.71431 -9.29816 -9.06302 -8.57126 -8.43476 -7.54534 -6.94687 -5.99696 -3.99517 3.30782 3.36382 3.38836 4.40988 4.93340 5.08466 5.33741 5.40751 5.53710 5.56966 5.75826 5.76559 5.87293 6.02191 6.08137 6.18550 6.21036 6.30254 6.35708 6.42882 6.49130 6.49779 6.55750 6.61907 6.66038 6.75889 6.80692 6.81533 6.88965 6.95314 7.06052 7.14202 7.26962 7.36579 7.61234 7.74476 7.87344 7.97380 8.19202 8.27187 8.42106 8.72761 9.08745 9.62923 11.08520 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020676 B = 0.011591 C = 0.008617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.874074 B = 2414.998013 C = 3248.520293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.105 3.895 3 C -0.138 4.138 4 C 0.076 3.924 5 N -0.694 5.694 6 C 0.068 3.932 7 C 0.217 3.783 8 H 0.030 0.970 9 C -0.509 4.509 10 H 0.086 0.914 11 C 0.061 3.939 12 N -0.892 5.892 13 Si 0.880 3.120 14 H -0.278 1.278 15 H -0.290 1.290 16 H -0.274 1.274 17 N -0.522 5.522 18 C 0.096 3.904 19 C -0.162 4.162 20 C -0.112 4.112 21 C -0.126 4.126 22 C -0.104 4.104 23 H 0.040 0.960 24 H 0.045 0.955 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.025 0.975 30 H 0.058 0.942 31 H 0.323 0.677 32 H 0.095 0.905 33 H 0.010 0.990 34 H 0.260 0.740 35 H 0.058 0.942 36 H 0.120 0.880 37 H 0.037 0.963 38 H 0.044 0.956 39 H 0.053 0.947 40 H 0.038 0.962 41 H 0.089 0.911 42 H 0.037 0.963 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.812 8.304 1.552 8.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 C -0.196 4.196 4 C -0.054 4.054 5 N -0.324 5.324 6 C -0.061 4.061 7 C 0.110 3.890 8 H 0.047 0.953 9 C -0.547 4.547 10 H 0.104 0.896 11 C -0.140 4.140 12 N -0.531 5.531 13 Si 0.708 3.292 14 H -0.203 1.203 15 H -0.216 1.216 16 H -0.199 1.199 17 N -0.246 5.246 18 C -0.012 4.012 19 C -0.200 4.200 20 C -0.150 4.150 21 C -0.164 4.164 22 C -0.142 4.142 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.138 0.862 32 H 0.113 0.887 33 H 0.029 0.971 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.138 0.862 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.107 0.893 42 H 0.056 0.944 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.637 8.267 1.318 8.395 hybrid contribution 0.363 -0.666 -0.591 0.962 sum 1.000 7.600 0.727 7.700 Atomic orbital electron populations 1.22453 0.97100 1.03133 0.99854 1.20989 0.92746 0.92828 0.91989 1.21907 1.01446 0.95677 1.00537 1.21857 0.96726 0.90532 0.96262 1.60709 1.63849 1.02102 1.05734 1.22307 0.95620 0.99754 0.88413 1.19424 0.95074 0.81777 0.92694 0.95275 1.21661 1.26901 0.98463 1.07717 0.89619 1.24912 0.95216 0.97415 0.96480 1.69917 1.33118 1.12752 1.37311 0.86860 0.79339 0.78838 0.84117 1.20342 1.21583 1.19919 1.62690 1.58555 1.04104 0.99228 1.22052 0.93070 0.95733 0.90393 1.23415 0.96475 1.05125 0.94968 1.22262 0.96912 0.98793 0.97031 1.22576 0.94883 1.02770 0.96127 1.22191 0.99004 0.98275 0.94701 0.94082 0.93585 0.90663 0.92319 0.92764 0.93243 0.95701 0.92403 0.86163 0.88711 0.97149 0.93042 0.92416 0.86199 0.94402 0.93762 0.92868 0.94296 0.89309 0.94412 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 7.08 37.16 0.26 -2.76 16 2 C 0.11 1.90 0.68 -131.54 -0.09 1.81 16 3 C -0.14 -2.10 8.08 37.16 0.30 -1.80 16 4 C 0.08 1.36 5.43 -3.77 -0.02 1.34 16 5 N -0.69 -13.69 6.32 -113.64 -0.72 -14.41 16 6 C 0.07 1.57 5.82 -3.77 -0.02 1.55 16 7 C 0.22 5.07 0.89 -68.81 -0.06 5.01 16 8 H 0.03 0.78 4.20 -51.93 -0.22 0.56 16 9 C -0.51 -12.67 5.10 -34.44 -0.18 -12.84 16 10 H 0.09 2.11 2.92 -52.48 -0.15 1.96 16 11 C 0.06 1.58 5.33 -17.82 -0.10 1.49 16 12 N -0.89 -24.29 11.77 55.43 0.65 -23.64 16 13 Si 0.88 20.50 28.29 -169.99 -4.81 15.69 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 16 H -0.27 -6.24 6.98 56.52 0.39 -5.84 16 17 N -0.52 -10.70 4.12 -203.17 -0.84 -11.54 16 18 C 0.10 1.85 2.19 -66.59 -0.15 1.70 16 19 C -0.16 -3.23 4.47 -25.03 -0.11 -3.34 16 20 C -0.11 -2.07 6.91 -24.70 -0.17 -2.24 16 21 C -0.13 -2.41 6.14 -25.07 -0.15 -2.56 16 22 C -0.10 -1.97 5.65 -25.61 -0.14 -2.11 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.80 5.82 -51.93 -0.30 0.50 16 25 H 0.07 1.59 5.83 -51.93 -0.30 1.29 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.80 6.22 -51.93 -0.32 0.48 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.32 5.65 8.90 -39.29 -0.35 5.30 16 32 H 0.09 2.44 6.59 -51.93 -0.34 2.10 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.06 1.04 5.40 -51.93 -0.28 0.76 16 36 H 0.12 2.85 3.98 -51.93 -0.21 2.65 16 37 H 0.04 0.71 6.74 -51.93 -0.35 0.36 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 1.92 4.35 -51.93 -0.23 1.70 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 1.73 6.17 -51.93 -0.32 1.41 16 LS Contribution 292.30 15.07 4.40 4.40 Total: -1.00 -25.69 292.30 -8.68 -34.37 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.74 Total: 9.87 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -0.63 Total: -14.74 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.90 Total: -49.59 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.81 Total: 15.69 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -25.69 -8.68 -34.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221594948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.827 kcal (2) G-P(sol) polarization free energy of solvation -25.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds