Wall clock time and date at job start Mon Mar 30 2020 04:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.50557 * 2 1 4 4 C 1.53055 * 109.48889 * 239.94959 * 2 1 3 5 5 N 1.46962 * 109.38054 * 298.42133 * 4 2 1 6 6 C 1.46893 * 111.01726 * 176.83041 * 5 4 2 7 7 C 1.54269 * 110.03353 * 58.44128 * 6 5 4 8 8 C 1.54959 * 104.16334 * 217.13368 * 7 6 5 9 9 C 1.54890 * 102.77545 * 37.88855 * 8 7 6 10 10 C 1.53874 * 110.03711 * 301.22563 * 6 5 4 11 11 C 1.46951 * 110.87992 * 300.71631 * 5 4 2 12 12 H 1.08999 * 109.48790 * 299.30474 * 11 5 4 13 13 C 1.50702 * 109.48952 * 179.26391 * 11 5 4 14 14 H 1.08001 * 119.99940 * 335.10102 * 13 11 5 15 15 C 1.37878 * 120.00111 * 155.10012 * 13 11 5 16 16 N 1.31514 * 119.99981 * 355.31188 * 15 13 11 17 17 Si 1.86792 * 120.00119 * 175.31558 * 15 13 11 18 18 H 1.48498 * 109.47391 * 59.99656 * 17 15 13 19 19 H 1.48512 * 109.47071 * 299.99800 * 17 15 13 20 20 H 1.48503 * 109.47259 * 180.02562 * 17 15 13 21 21 C 1.53055 * 109.38593 * 59.28689 * 11 5 4 22 22 N 1.46948 * 109.48948 * 120.05679 * 2 1 3 23 23 H 1.09003 * 109.47060 * 299.94724 * 1 2 3 24 24 H 1.09008 * 109.47224 * 59.94125 * 1 2 3 25 25 H 1.08996 * 109.47566 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47029 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47322 * 300.05176 * 3 2 1 28 28 H 1.08999 * 109.47224 * 60.05600 * 3 2 1 29 29 H 1.09003 * 109.49126 * 58.40031 * 4 2 1 30 30 H 1.08998 * 109.48786 * 178.44556 * 4 2 1 31 31 H 1.09004 * 110.01846 * 179.82908 * 6 5 4 32 32 H 1.09004 * 110.48681 * 335.78443 * 7 6 5 33 33 H 1.09002 * 110.48810 * 98.42043 * 7 6 5 34 34 H 1.08995 * 110.72031 * 279.57515 * 8 7 6 35 35 H 1.09004 * 110.76363 * 156.22250 * 8 7 6 36 36 H 1.08997 * 110.48452 * 203.40413 * 9 8 7 37 37 H 1.09003 * 110.48797 * 80.76199 * 9 8 7 38 38 H 1.09004 * 110.03132 * 238.57033 * 10 6 5 39 39 H 1.09001 * 110.02836 * 359.94763 * 10 6 5 40 40 H 0.97002 * 119.99943 * 5.30814 * 16 15 13 41 41 H 1.08991 * 109.48730 * 61.57561 * 21 11 5 42 42 H 1.08998 * 109.48723 * 181.62262 * 21 11 5 43 43 H 1.00900 * 110.99938 * 184.51541 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 6 2.0406 -0.7225 -1.2489 5 7 1.5813 -2.1184 -1.2269 6 6 1.9885 -2.8263 -2.4478 7 6 3.5238 -2.7879 -2.5938 8 6 3.7558 -2.6306 -4.1179 9 6 2.6143 -1.6730 -4.5411 10 6 1.4104 -2.1182 -3.6855 11 6 2.0711 -2.8120 -0.0275 12 1 3.1611 -2.8124 -0.0273 13 6 1.5678 -4.2325 -0.0275 14 1 0.6659 -4.4859 -0.5650 15 6 2.2588 -5.2087 0.6585 16 7 3.4049 -4.9206 1.2356 17 14 1.5672 -6.9404 0.7682 18 1 1.4167 -7.5009 -0.5987 19 1 0.2414 -6.9025 1.4364 20 1 2.4931 -7.7944 1.5547 21 6 1.5604 -2.0895 1.2214 22 7 2.0202 -0.6938 1.1990 23 1 -0.3633 0.5130 0.8905 24 1 -0.3634 0.5148 -0.8895 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1309 1.4415 -0.0005 27 1 1.6771 1.9565 -0.8895 28 1 1.6786 1.9560 0.8905 29 1 1.6544 -0.2266 -2.1395 30 1 3.1302 -0.6985 -1.2630 31 1 1.6425 -3.8594 -2.4130 32 1 3.9370 -1.9351 -2.0551 33 1 3.9646 -3.7176 -2.2340 34 1 3.6614 -3.5915 -4.6235 35 1 4.7295 -2.1825 -4.3162 36 1 2.3924 -1.7895 -5.6019 37 1 2.8803 -0.6399 -4.3172 38 1 0.7844 -2.8078 -4.2519 39 1 0.8268 -1.2497 -3.3802 40 1 3.7267 -4.0056 1.2450 41 1 0.4709 -2.1132 1.2352 42 1 1.9464 -2.5856 2.1118 43 1 3.0261 -0.6434 1.2600 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221595175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:33 Heat of formation + Delta-G solvation = -5.251084 kcal Electronic energy + Delta-G solvation = -20791.168536 eV Core-core repulsion = 18063.326527 eV Total energy + Delta-G solvation = -2727.842008 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.68404 -37.14286 -34.21400 -32.35519 -31.21173 -28.33778 -27.40819 -26.93646 -26.77586 -23.82547 -23.49168 -20.97588 -20.24057 -19.01593 -18.28502 -16.67348 -15.63351 -15.27514 -14.79202 -14.46991 -14.17020 -13.77005 -13.60794 -13.53850 -12.95993 -12.63914 -11.96533 -11.79284 -11.72869 -11.39127 -11.37990 -11.25824 -10.86511 -10.77504 -10.73511 -10.70782 -10.62527 -10.41217 -10.24031 -10.10937 -10.03403 -9.88285 -9.72934 -8.83176 -8.41055 -7.61286 -7.14928 -6.37243 -4.08584 3.41799 3.43784 3.61983 4.47940 4.67594 4.89388 5.06197 5.12254 5.25749 5.32853 5.40538 5.54421 5.58584 5.80639 5.89803 5.95117 5.99685 6.01401 6.05373 6.08971 6.16117 6.21989 6.24410 6.28288 6.29755 6.32628 6.48665 6.51591 6.57247 6.63886 6.71863 6.77626 6.82373 6.95698 7.09910 7.36374 7.63511 7.92868 8.02983 8.10668 8.38459 8.58373 8.85537 9.61864 10.98588 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016589 B = 0.010222 C = 0.007294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.507439 B = 2738.565062 C = 3837.833822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.111 3.889 3 C -0.136 4.136 4 C 0.025 3.975 5 N -0.517 5.517 6 C 0.097 3.903 7 C -0.150 4.150 8 C -0.122 4.122 9 C -0.123 4.123 10 C -0.122 4.122 11 C 0.170 3.830 12 H 0.004 0.996 13 C -0.579 4.579 14 H 0.055 0.945 15 C 0.021 3.979 16 N -0.911 5.911 17 Si 1.066 2.934 18 H -0.289 1.289 19 H -0.287 1.287 20 H -0.284 1.284 21 C 0.066 3.934 22 N -0.688 5.688 23 H 0.047 0.953 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.021 0.979 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.267 0.733 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.750 8.316 -7.159 11.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.019 3.981 3 C -0.194 4.194 4 C -0.105 4.105 5 N -0.240 5.240 6 C -0.012 4.012 7 C -0.189 4.189 8 C -0.160 4.160 9 C -0.161 4.161 10 C -0.160 4.160 11 C 0.062 3.938 12 H 0.022 0.978 13 C -0.619 4.619 14 H 0.073 0.927 15 C -0.183 4.183 16 N -0.547 5.547 17 Si 0.895 3.105 18 H -0.216 1.216 19 H -0.213 1.213 20 H -0.210 1.210 21 C -0.063 4.063 22 N -0.317 5.317 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.039 0.961 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.479 7.019 -6.139 9.649 hybrid contribution 1.260 1.109 -1.306 2.127 sum -1.220 8.129 -7.445 11.090 Atomic orbital electron populations 1.21694 0.93757 1.03043 0.99823 1.20903 0.96017 0.92559 0.88575 1.21799 1.00358 0.95753 1.01505 1.22855 0.96772 0.92314 0.98574 1.62373 1.58937 0.99758 1.02909 1.22156 0.91304 0.99173 0.88567 1.22955 0.99279 1.01727 0.94964 1.22444 0.97561 0.99106 0.96846 1.22352 0.96024 0.98854 0.98821 1.22296 0.97166 1.00457 0.96075 1.20051 0.93553 0.93952 0.86215 0.97817 1.21760 1.12652 0.92491 1.34947 0.92657 1.25769 0.94255 1.04645 0.93651 1.70820 1.18356 1.22378 1.43194 0.83571 0.75513 0.75051 0.76381 1.21585 1.21337 1.20952 1.22380 1.00628 0.84562 0.98732 1.60951 1.15300 1.17094 1.38350 0.93389 0.93606 0.90815 0.93384 0.92730 0.92081 0.91760 0.96071 0.88679 0.92342 0.91571 0.91820 0.92649 0.92431 0.92449 0.92271 0.91346 0.92158 0.91194 0.91594 0.85702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.12 37.16 0.30 -1.79 16 2 C 0.11 1.88 0.95 -131.55 -0.12 1.76 16 3 C -0.14 -1.90 8.73 37.16 0.32 -1.57 16 4 C 0.02 0.45 3.64 -3.76 -0.01 0.43 16 5 N -0.52 -10.57 3.81 -218.61 -0.83 -11.41 16 6 C 0.10 1.89 2.75 -66.60 -0.18 1.71 16 7 C -0.15 -2.83 5.19 -25.03 -0.13 -2.96 16 8 C -0.12 -1.84 6.91 -24.70 -0.17 -2.02 16 9 C -0.12 -1.72 6.83 -25.07 -0.17 -1.89 16 10 C -0.12 -1.95 5.91 -25.62 -0.15 -2.10 16 11 C 0.17 4.01 1.40 -68.81 -0.10 3.92 16 12 H 0.00 0.11 5.89 -51.93 -0.31 -0.19 16 13 C -0.58 -15.29 7.04 -34.44 -0.24 -15.53 16 14 H 0.06 1.51 7.56 -52.49 -0.40 1.11 16 15 C 0.02 0.58 5.45 -17.82 -0.10 0.49 16 16 N -0.91 -26.35 13.62 55.43 0.76 -25.59 16 17 Si 1.07 24.65 29.91 -169.99 -5.08 19.56 16 18 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 C 0.07 1.48 5.61 -3.76 -0.02 1.46 16 22 N -0.69 -13.10 6.35 -99.83 -0.63 -13.73 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 25 H 0.07 1.41 5.94 -51.93 -0.31 1.10 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 1.07 6.16 -51.93 -0.32 0.75 16 30 H 0.02 0.40 6.01 -51.93 -0.31 0.09 16 31 H 0.10 2.13 6.73 -51.93 -0.35 1.78 16 32 H 0.06 1.14 5.59 -51.93 -0.29 0.85 16 33 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.10 6.30 -51.93 -0.33 0.77 16 40 H 0.27 7.73 6.66 -40.82 -0.27 7.46 16 41 H 0.07 1.62 6.34 -51.93 -0.33 1.29 16 42 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 43 H 0.33 6.16 8.80 -39.29 -0.35 5.82 16 LS Contribution 313.24 15.07 4.72 4.72 Total: -1.00 -27.11 313.24 -9.28 -36.38 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -7.43 Total: 8.16 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -0.77 Total: -18.10 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.71 Total: -50.72 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.08 Total: 19.56 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.11 -9.28 -36.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221595175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.132 kcal (2) G-P(sol) polarization free energy of solvation -27.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds