Wall clock time and date at job start Mon Mar 30 2020 04:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.48546 * 2 1 4 4 C 1.53052 * 109.48996 * 239.96205 * 2 1 3 5 5 N 1.46958 * 109.36197 * 181.65333 * 4 2 1 6 6 C 1.46904 * 110.99394 * 183.16482 * 5 4 2 7 7 C 1.54272 * 110.03183 * 164.81087 * 6 5 4 8 8 C 1.54879 * 104.19701 * 217.10487 * 7 6 5 9 9 C 1.54891 * 102.75146 * 37.94263 * 8 7 6 10 10 C 1.53869 * 110.03623 * 47.64793 * 6 5 4 11 11 C 1.46948 * 110.90350 * 59.28312 * 5 4 2 12 12 H 1.09002 * 109.49190 * 60.65671 * 11 5 4 13 13 C 1.50701 * 109.51006 * 180.71044 * 11 5 4 14 14 H 1.08001 * 119.99948 * 54.66225 * 13 11 5 15 15 C 1.37876 * 120.00531 * 234.66023 * 13 11 5 16 16 N 1.31508 * 120.00411 * 184.09387 * 15 13 11 17 17 Si 1.86801 * 119.99793 * 4.09995 * 15 13 11 18 18 H 1.48496 * 109.47202 * 93.77994 * 17 15 13 19 19 H 1.48502 * 109.47243 * 213.78699 * 17 15 13 20 20 H 1.48512 * 109.47005 * 333.78359 * 17 15 13 21 21 C 1.53055 * 109.36478 * 300.69304 * 11 5 4 22 22 N 1.46949 * 109.36525 * 58.39996 * 21 11 5 23 23 H 1.08993 * 109.47501 * 59.99922 * 1 2 3 24 24 H 1.09001 * 109.47446 * 299.99314 * 1 2 3 25 25 H 1.09011 * 109.46746 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47081 * 60.00300 * 3 2 1 27 27 H 1.08998 * 109.46878 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47074 * 300.00107 * 3 2 1 29 29 H 1.08999 * 109.48575 * 301.59371 * 4 2 1 30 30 H 1.08991 * 109.49271 * 61.65889 * 4 2 1 31 31 H 1.08999 * 110.02110 * 286.25033 * 6 5 4 32 32 H 1.09001 * 110.48378 * 335.78533 * 7 6 5 33 33 H 1.09002 * 110.48739 * 98.42059 * 7 6 5 34 34 H 1.08998 * 110.75670 * 279.62378 * 8 7 6 35 35 H 1.09006 * 110.91683 * 156.32942 * 8 7 6 36 36 H 1.09000 * 110.48949 * 203.37996 * 9 8 7 37 37 H 1.08998 * 110.59662 * 80.79008 * 9 8 7 38 38 H 1.09000 * 110.03407 * 238.56936 * 10 6 5 39 39 H 1.09004 * 110.03026 * 359.97438 * 10 6 5 40 40 H 0.96998 * 120.00378 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.48602 * 298.42965 * 21 11 5 42 42 H 1.09003 * 109.48784 * 178.37211 * 21 11 5 43 43 H 1.00900 * 111.00244 * 176.81246 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4424 0.0000 4 6 2.0406 -0.7222 -1.2490 5 7 3.5097 -0.7553 -1.2263 6 6 4.0411 -1.3754 -2.4475 7 6 5.5460 -1.0654 -2.5857 8 6 5.7542 -0.8642 -4.1072 9 6 4.4638 -0.1210 -4.5336 10 6 3.3531 -0.7750 -3.6859 11 6 4.0000 -1.4489 -0.0272 12 1 3.6361 -2.4763 -0.0270 13 6 5.5070 -1.4493 -0.0269 14 1 6.0473 -0.5182 -0.1132 15 6 6.1961 -2.6384 0.0834 16 7 7.5087 -2.6327 0.1648 17 14 5.2653 -4.2576 0.1173 18 1 5.1852 -4.8114 -1.2582 19 1 5.9766 -5.2192 0.9976 20 1 3.8940 -4.0294 0.6397 21 6 3.4893 -0.7261 1.2216 22 7 2.0204 -0.6936 1.1992 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.6772 1.9563 0.8900 27 1 3.1303 1.4421 -0.0005 28 1 1.6771 1.9563 -0.8899 29 1 1.6545 -1.7414 -1.2631 30 1 1.7022 -0.1925 -2.1394 31 1 3.8824 -2.4534 -2.4181 32 1 5.7994 -0.1551 -2.0424 33 1 6.1428 -1.9038 -2.2265 34 1 5.8330 -1.8246 -4.6166 35 1 6.6348 -0.2520 -4.3020 36 1 4.2708 -0.2703 -5.5959 37 1 4.5409 0.9422 -4.3065 38 1 2.8612 -1.5617 -4.2580 39 1 2.6246 -0.0238 -3.3809 40 1 7.9935 -3.4693 0.2420 41 1 3.8755 0.2931 1.2353 42 1 3.8279 -1.2556 2.1122 43 1 1.6553 -0.2677 2.0379 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221595221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:36 Heat of formation + Delta-G solvation = 8.327502 kcal Electronic energy + Delta-G solvation = -20852.624935 eV Core-core repulsion = 18125.371738 eV Total energy + Delta-G solvation = -2727.253196 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.38669 -37.06305 -33.99793 -32.48918 -31.57772 -28.54550 -27.47700 -26.94220 -26.70379 -24.03557 -23.46292 -20.56071 -19.79478 -18.83525 -17.88459 -17.09830 -15.77508 -15.04445 -14.62960 -14.44943 -14.14042 -13.96659 -13.47361 -13.13314 -12.94144 -12.71608 -12.46244 -12.26192 -11.89268 -11.57774 -11.26886 -11.01135 -10.94056 -10.88946 -10.66694 -10.46714 -10.30596 -10.14153 -10.02434 -9.86132 -9.71709 -9.59549 -9.53099 -8.95468 -8.46273 -7.81115 -7.10529 -6.11107 -4.06028 3.25430 3.35442 3.40286 4.38675 4.72053 4.76147 5.19710 5.26814 5.31544 5.38671 5.46623 5.58857 5.65015 5.86329 5.95701 6.03207 6.10391 6.12610 6.19275 6.21259 6.26258 6.32850 6.36252 6.36874 6.39318 6.49833 6.51196 6.54875 6.66310 6.76514 6.78300 6.86095 6.98042 7.16899 7.37108 7.50795 7.65882 7.79995 7.96277 8.15946 8.29565 8.66982 8.98531 9.52573 11.00378 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.011836 C = 0.008113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.322276 B = 2365.144148 C = 3450.567012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.112 3.888 3 C -0.167 4.167 4 C 0.059 3.941 5 N -0.524 5.524 6 C 0.101 3.899 7 C -0.082 4.082 8 C -0.137 4.137 9 C -0.116 4.116 10 C -0.129 4.129 11 C 0.174 3.826 12 H 0.021 0.979 13 C -0.488 4.488 14 H 0.082 0.918 15 C 0.077 3.923 16 N -0.892 5.892 17 Si 0.858 3.142 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.257 1.257 21 C 0.071 3.929 22 N -0.689 5.689 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.077 0.923 28 H 0.049 0.951 29 H 0.023 0.977 30 H 0.070 0.930 31 H 0.023 0.977 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.263 0.737 41 H 0.034 0.966 42 H 0.066 0.934 43 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.070 4.649 -4.143 11.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.020 3.980 3 C -0.226 4.226 4 C -0.070 4.070 5 N -0.250 5.250 6 C -0.007 4.007 7 C -0.120 4.120 8 C -0.175 4.175 9 C -0.154 4.154 10 C -0.167 4.167 11 C 0.068 3.932 12 H 0.039 0.961 13 C -0.528 4.528 14 H 0.100 0.900 15 C -0.126 4.126 16 N -0.529 5.529 17 Si 0.686 3.314 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.182 1.182 21 C -0.058 4.058 22 N -0.319 5.319 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.084 0.916 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.790 4.364 -4.372 11.576 hybrid contribution -0.547 -0.932 0.240 1.107 sum -10.337 3.433 -4.132 11.650 Atomic orbital electron populations 1.21794 0.94824 1.01793 1.00999 1.20896 0.93453 0.92026 0.91613 1.22372 1.03712 0.96427 1.00121 1.22219 0.90935 0.97864 0.95936 1.62619 1.04431 1.54984 1.02957 1.21919 0.95995 0.94586 0.88236 1.22484 0.94075 1.04030 0.91393 1.22696 0.96556 0.98972 0.99284 1.22249 0.95757 0.99570 0.97775 1.22466 0.98199 0.99673 0.96364 1.19983 0.95576 0.92154 0.85474 0.96128 1.20824 0.88057 0.94961 1.48933 0.90047 1.24982 0.94614 0.98339 0.94653 1.69884 1.06202 1.27009 1.49850 0.87130 0.81113 0.84687 0.78486 1.20417 1.21456 1.18194 1.22246 0.84143 0.99511 0.99915 1.60900 1.10927 1.56686 1.03426 0.92659 0.93087 0.92355 0.94263 0.90380 0.93167 0.95887 0.91234 0.95900 0.90283 0.90047 0.92906 0.92478 0.93194 0.92047 0.93158 0.91062 0.92650 0.94751 0.91564 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.75 37.16 0.32 -1.47 16 2 C 0.11 1.80 0.94 -131.54 -0.12 1.68 16 3 C -0.17 -2.59 8.11 37.16 0.30 -2.29 16 4 C 0.06 1.06 3.89 -3.77 -0.01 1.05 16 5 N -0.52 -10.77 3.74 -218.62 -0.82 -11.59 16 6 C 0.10 2.05 2.64 -66.59 -0.18 1.87 16 7 C -0.08 -1.74 4.45 -25.07 -0.11 -1.86 16 8 C -0.14 -2.39 6.91 -24.74 -0.17 -2.56 16 9 C -0.12 -1.79 6.83 -25.07 -0.17 -1.96 16 10 C -0.13 -2.14 5.94 -25.62 -0.15 -2.29 16 11 C 0.17 4.02 1.89 -68.81 -0.13 3.89 16 12 H 0.02 0.53 4.32 -51.93 -0.22 0.31 16 13 C -0.49 -12.68 5.65 -34.44 -0.19 -12.88 16 14 H 0.08 2.34 7.17 -52.49 -0.38 1.96 16 15 C 0.08 2.08 4.26 -17.82 -0.08 2.00 16 16 N -0.89 -25.65 13.96 55.43 0.77 -24.88 16 17 Si 0.86 21.13 27.53 -169.99 -4.68 16.45 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.26 -6.31 6.00 56.52 0.34 -5.97 16 21 C 0.07 1.47 5.60 -3.77 -0.02 1.45 16 22 N -0.69 -12.25 6.34 -99.83 -0.63 -12.89 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 1.42 5.94 -51.93 -0.31 1.11 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 1.13 5.56 -51.93 -0.29 0.84 16 31 H 0.02 0.51 8.09 -51.93 -0.42 0.09 16 32 H 0.08 1.83 6.76 -51.93 -0.35 1.48 16 33 H 0.08 2.00 6.13 -51.93 -0.32 1.68 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.07 1.13 5.48 -51.93 -0.28 0.85 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.03 0.72 6.35 -51.93 -0.33 0.39 16 42 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.33 5.04 8.81 -39.29 -0.35 4.70 16 LS Contribution 308.28 15.07 4.65 4.65 Total: -1.00 -27.19 308.28 -8.94 -36.14 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -7.52 Total: 5.48 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -0.72 Total: -13.36 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.68 Total: -49.35 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.68 Total: 16.45 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.19 -8.94 -36.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221595221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.463 kcal (2) G-P(sol) polarization free energy of solvation -27.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds