Wall clock time and date at job start Mon Mar 30 2020 04:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.48546 * 2 1 4 4 C 1.53052 * 109.48996 * 239.96205 * 2 1 3 5 5 N 1.46958 * 109.36197 * 181.65333 * 4 2 1 6 6 C 1.46904 * 110.99394 * 183.16482 * 5 4 2 7 7 C 1.54272 * 110.03183 * 164.81087 * 6 5 4 8 8 C 1.54879 * 104.19701 * 217.10487 * 7 6 5 9 9 C 1.54891 * 102.75146 * 37.94263 * 8 7 6 10 10 C 1.53869 * 110.03623 * 47.64793 * 6 5 4 11 11 C 1.46948 * 110.90350 * 59.28312 * 5 4 2 12 12 H 1.09002 * 109.49190 * 60.65671 * 11 5 4 13 13 C 1.50701 * 109.51006 * 180.71044 * 11 5 4 14 14 H 1.08001 * 119.99948 * 54.66225 * 13 11 5 15 15 C 1.37876 * 120.00531 * 234.66023 * 13 11 5 16 16 N 1.31508 * 120.00411 * 184.09387 * 15 13 11 17 17 Si 1.86801 * 119.99793 * 4.09995 * 15 13 11 18 18 H 1.48496 * 109.47202 * 93.77994 * 17 15 13 19 19 H 1.48502 * 109.47243 * 213.78699 * 17 15 13 20 20 H 1.48512 * 109.47005 * 333.78359 * 17 15 13 21 21 C 1.53055 * 109.36478 * 300.69304 * 11 5 4 22 22 N 1.46949 * 109.36525 * 58.39996 * 21 11 5 23 23 H 1.08993 * 109.47501 * 59.99922 * 1 2 3 24 24 H 1.09001 * 109.47446 * 299.99314 * 1 2 3 25 25 H 1.09011 * 109.46746 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47081 * 60.00300 * 3 2 1 27 27 H 1.08998 * 109.46878 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47074 * 300.00107 * 3 2 1 29 29 H 1.08999 * 109.48575 * 301.59371 * 4 2 1 30 30 H 1.08991 * 109.49271 * 61.65889 * 4 2 1 31 31 H 1.08999 * 110.02110 * 286.25033 * 6 5 4 32 32 H 1.09001 * 110.48378 * 335.78533 * 7 6 5 33 33 H 1.09002 * 110.48739 * 98.42059 * 7 6 5 34 34 H 1.08998 * 110.75670 * 279.62378 * 8 7 6 35 35 H 1.09006 * 110.91683 * 156.32942 * 8 7 6 36 36 H 1.09000 * 110.48949 * 203.37996 * 9 8 7 37 37 H 1.08998 * 110.59662 * 80.79008 * 9 8 7 38 38 H 1.09000 * 110.03407 * 238.56936 * 10 6 5 39 39 H 1.09004 * 110.03026 * 359.97438 * 10 6 5 40 40 H 0.96998 * 120.00378 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.48602 * 298.42965 * 21 11 5 42 42 H 1.09003 * 109.48784 * 178.37211 * 21 11 5 43 43 H 1.00900 * 111.00244 * 176.81246 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4424 0.0000 4 6 2.0406 -0.7222 -1.2490 5 7 3.5097 -0.7553 -1.2263 6 6 4.0411 -1.3754 -2.4475 7 6 5.5460 -1.0654 -2.5857 8 6 5.7542 -0.8642 -4.1072 9 6 4.4638 -0.1210 -4.5336 10 6 3.3531 -0.7750 -3.6859 11 6 4.0000 -1.4489 -0.0272 12 1 3.6361 -2.4763 -0.0270 13 6 5.5070 -1.4493 -0.0269 14 1 6.0473 -0.5182 -0.1132 15 6 6.1961 -2.6384 0.0834 16 7 7.5087 -2.6327 0.1648 17 14 5.2653 -4.2576 0.1173 18 1 5.1852 -4.8114 -1.2582 19 1 5.9766 -5.2192 0.9976 20 1 3.8940 -4.0294 0.6397 21 6 3.4893 -0.7261 1.2216 22 7 2.0204 -0.6936 1.1992 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.6772 1.9563 0.8900 27 1 3.1303 1.4421 -0.0005 28 1 1.6771 1.9563 -0.8899 29 1 1.6545 -1.7414 -1.2631 30 1 1.7022 -0.1925 -2.1394 31 1 3.8824 -2.4534 -2.4181 32 1 5.7994 -0.1551 -2.0424 33 1 6.1428 -1.9038 -2.2265 34 1 5.8330 -1.8246 -4.6166 35 1 6.6348 -0.2520 -4.3020 36 1 4.2708 -0.2703 -5.5959 37 1 4.5409 0.9422 -4.3065 38 1 2.8612 -1.5617 -4.2580 39 1 2.6246 -0.0238 -3.3809 40 1 7.9935 -3.4693 0.2420 41 1 3.8755 0.2931 1.2353 42 1 3.8279 -1.2556 2.1122 43 1 1.6553 -0.2677 2.0379 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221595221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:35 Heat of formation + Delta-G solvation = -10.126037 kcal Electronic energy + Delta-G solvation = -20853.425140 eV Core-core repulsion = 18125.371738 eV Total energy + Delta-G solvation = -2728.053402 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.93598 -38.50652 -35.69420 -34.28238 -33.23942 -30.15585 -29.05161 -28.26889 -28.04439 -25.74708 -25.05327 -22.20501 -21.30138 -20.38475 -19.44996 -19.10310 -17.37958 -16.50455 -16.11638 -16.03139 -15.84469 -15.59429 -14.92801 -14.83227 -14.52874 -14.31440 -13.98603 -13.93794 -13.03302 -12.92202 -12.80892 -12.75020 -12.44183 -12.38624 -12.04714 -11.97508 -11.89695 -11.73750 -11.71334 -11.56025 -11.28047 -11.22058 -11.13871 -10.85163 -10.53395 -9.28337 -8.81057 -8.26166 -6.21268 1.23762 1.29693 1.37548 2.30544 2.96466 3.30949 3.44968 3.83226 3.95337 3.99682 4.17587 4.28144 4.31625 4.54354 4.60337 4.63416 4.66158 4.76392 4.79180 4.80080 4.86902 4.94308 4.98091 4.99619 5.04623 5.06589 5.10922 5.18844 5.23299 5.25739 5.34146 5.37440 5.48950 5.61493 5.63909 5.67198 5.85890 6.16744 6.26136 6.48540 6.71007 6.74174 6.86657 7.39230 8.89393 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.011836 C = 0.008113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.322276 B = 2365.144148 C = 3450.567012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.107 3.893 3 C -0.159 4.159 4 C 0.057 3.943 5 N -0.526 5.526 6 C 0.096 3.904 7 C -0.080 4.080 8 C -0.132 4.132 9 C -0.106 4.106 10 C -0.120 4.120 11 C 0.178 3.822 12 H 0.001 0.999 13 C -0.470 4.470 14 H 0.043 0.957 15 C 0.034 3.966 16 N -0.934 5.934 17 Si 0.909 3.091 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.254 1.254 21 C 0.080 3.920 22 N -0.691 5.691 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.009 0.991 30 H 0.096 0.904 31 H -0.003 1.003 32 H 0.050 0.950 33 H 0.037 0.963 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.263 0.737 41 H 0.028 0.972 42 H 0.054 0.946 43 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.174 5.612 -5.459 15.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.016 3.984 3 C -0.218 4.218 4 C -0.071 4.071 5 N -0.251 5.251 6 C -0.013 4.013 7 C -0.118 4.118 8 C -0.170 4.170 9 C -0.143 4.143 10 C -0.158 4.158 11 C 0.070 3.930 12 H 0.019 0.981 13 C -0.509 4.509 14 H 0.061 0.939 15 C -0.164 4.164 16 N -0.575 5.575 17 Si 0.736 3.264 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.178 1.178 21 C -0.050 4.050 22 N -0.323 5.323 23 H 0.095 0.905 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.027 0.973 30 H 0.114 0.886 31 H 0.015 0.985 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.072 0.928 41 H 0.046 0.954 42 H 0.073 0.927 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.926 5.342 -5.685 15.098 hybrid contribution 0.423 -1.155 0.643 1.388 sum -12.503 4.187 -5.042 14.116 Atomic orbital electron populations 1.21727 0.91735 1.02130 1.02949 1.21075 0.95677 0.91876 0.89800 1.22262 1.01453 0.96213 1.01883 1.22390 0.88622 0.97802 0.98281 1.62505 1.06592 1.53987 1.02032 1.22001 0.95695 0.93468 0.90126 1.22230 0.94617 1.00741 0.94181 1.22635 0.98466 0.99968 0.95971 1.22214 0.93485 0.99284 0.99354 1.22411 0.98496 1.00350 0.94524 1.19825 0.93522 0.91786 0.87835 0.98131 1.20805 0.89763 0.93162 1.47177 0.93867 1.25486 0.95022 1.00943 0.94975 1.69994 1.07603 1.27544 1.52364 0.86314 0.80112 0.81648 0.78300 1.20422 1.21218 1.17834 1.21917 0.86526 0.98503 0.98042 1.60801 1.08520 1.57814 1.05150 0.90529 0.91385 0.92842 0.92529 0.93713 0.91412 0.97253 0.88644 0.98469 0.93109 0.94381 0.92283 0.91809 0.90015 0.91533 0.91405 0.89778 0.92778 0.95403 0.92732 0.83867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.75 71.98 0.63 -2.18 16 2 C 0.11 3.15 0.94 3.53 0.00 3.15 16 3 C -0.16 -4.47 8.11 71.98 0.58 -3.88 16 4 C 0.06 1.92 3.89 86.31 0.34 2.26 16 5 N -0.53 -21.53 3.74 -845.57 -3.16 -24.69 16 6 C 0.10 3.87 2.64 45.64 0.12 3.99 16 7 C -0.08 -3.50 4.45 31.67 0.14 -3.36 16 8 C -0.13 -4.51 6.91 31.88 0.22 -4.29 16 9 C -0.11 -2.94 6.83 31.67 0.22 -2.72 16 10 C -0.12 -3.64 5.94 31.32 0.19 -3.45 16 11 C 0.18 8.38 1.89 44.18 0.08 8.46 16 12 H 0.00 0.06 4.32 -2.39 -0.01 0.05 16 13 C -0.47 -25.68 5.65 25.60 0.14 -25.53 16 14 H 0.04 2.66 7.17 -2.91 -0.02 2.64 16 15 C 0.03 1.94 4.26 84.66 0.36 2.30 16 16 N -0.93 -56.56 13.96 21.45 0.30 -56.26 16 17 Si 0.91 45.17 27.53 68.60 1.89 47.06 16 18 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 19 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 20 H -0.25 -12.37 6.00 99.48 0.60 -11.77 16 21 C 0.08 3.34 5.60 86.31 0.48 3.83 16 22 N -0.69 -23.41 6.34 -469.76 -2.98 -26.38 16 23 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.04 1.56 5.94 -2.39 -0.01 1.55 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.10 2.73 5.56 -2.39 -0.01 2.71 16 31 H 0.00 -0.12 8.09 -2.39 -0.02 -0.14 16 32 H 0.05 2.48 6.76 -2.39 -0.02 2.46 16 33 H 0.04 1.97 6.13 -2.39 -0.01 1.95 16 34 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.08 2.34 5.48 -2.39 -0.01 2.32 16 40 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 41 H 0.03 1.19 6.35 -2.39 -0.02 1.18 16 42 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.34 9.79 8.81 -89.69 -0.79 8.99 16 Total: -1.00 -62.36 308.28 -0.36 -62.72 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.08 Total: 18.97 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: 3.51 Total: -21.42 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -5.84 Total: -107.33 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.89 Total: 47.06 kcal Total: -62.36 -0.36 -62.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221595221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.595 kcal (2) G-P(sol) polarization free energy of solvation -62.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds