Wall clock time and date at job start Mon Mar 30 2020 03:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47902 * 111.00393 * 2 1 4 4 C 1.50801 * 108.50039 * 153.79510 * 3 2 1 5 5 C 1.53698 * 112.10390 * 92.54810 * 4 3 2 6 6 C 1.52995 * 108.88419 * 197.78352 * 5 4 3 7 7 C 1.53000 * 108.87970 * 79.32454 * 5 4 3 8 8 N 1.48062 * 112.47015 * 318.55720 * 5 4 3 9 9 C 1.46898 * 110.99712 * 192.19659 * 8 5 4 10 10 C 1.53004 * 117.49809 * 265.38750 * 9 8 5 11 11 C 1.53002 * 117.49723 * 196.72949 * 9 8 5 12 12 C 1.44580 * 113.85413 * 318.31453 * 8 5 4 13 13 C 1.40018 * 110.99481 * 232.03407 * 2 1 3 14 14 H 1.09005 * 108.95885 * 67.42467 * 13 2 1 15 15 C 1.50699 * 108.96148 * 308.76831 * 13 2 1 16 16 H 1.08007 * 119.99945 * 328.38931 * 15 13 2 17 17 C 1.37881 * 120.00345 * 148.38359 * 15 13 2 18 18 N 1.31513 * 119.99650 * 4.80145 * 17 15 13 19 19 Si 1.86791 * 119.99902 * 184.79706 * 17 15 13 20 20 H 1.48498 * 109.47341 * 60.00721 * 19 17 15 21 21 H 1.48504 * 109.46817 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47762 * 299.99805 * 19 17 15 23 23 H 1.09004 * 109.47375 * 66.88561 * 1 2 3 24 24 H 1.08993 * 109.47876 * 186.88812 * 1 2 3 25 25 H 1.09004 * 109.46630 * 306.89511 * 1 2 3 26 26 H 1.09003 * 109.63818 * 273.50173 * 3 2 1 27 27 H 1.09005 * 109.63088 * 34.09265 * 3 2 1 28 28 H 1.08995 * 108.95863 * 213.23212 * 4 3 2 29 29 H 1.09008 * 108.95173 * 331.87559 * 4 3 2 30 30 H 1.08996 * 109.47437 * 190.91632 * 6 5 4 31 31 H 1.08998 * 109.47334 * 310.92142 * 6 5 4 32 32 H 1.09000 * 109.46968 * 70.91757 * 6 5 4 33 33 H 1.09000 * 109.47449 * 297.05414 * 7 5 4 34 34 H 1.09003 * 109.46881 * 57.05154 * 7 5 4 35 35 H 1.09000 * 109.47140 * 177.04666 * 7 5 4 36 36 H 1.09001 * 115.55338 * 51.06094 * 9 8 5 37 37 H 1.08998 * 117.49877 * 359.97438 * 10 9 8 38 38 H 1.09001 * 117.49723 * 145.02691 * 10 9 8 39 39 H 1.09005 * 117.49829 * 214.97815 * 11 9 8 40 40 H 1.09005 * 117.49860 * 359.97438 * 11 9 8 41 41 H 1.09001 * 109.57238 * 334.42146 * 12 8 5 42 42 H 1.08997 * 109.67629 * 214.09986 * 12 8 5 43 43 H 0.97000 * 120.00182 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3807 0.0000 4 6 3.3685 1.3676 0.6315 5 6 4.4848 1.1998 -0.4116 6 6 5.7642 0.7547 0.2996 7 6 4.7399 2.5497 -1.0851 8 7 4.1427 0.2027 -1.4512 9 6 5.3220 -0.1458 -2.2547 10 6 5.5362 0.6179 -3.5632 11 6 5.0826 -0.8438 -3.5950 12 6 3.4991 -0.9841 -0.9339 13 6 1.9707 -0.8042 -1.0306 14 1 1.7280 -0.3444 -1.9887 15 6 1.3129 -2.1582 -0.9595 16 1 1.0129 -2.5633 -0.0043 17 6 1.0940 -2.8799 -2.1138 18 7 1.5432 -2.4305 -3.2652 19 14 0.1597 -4.4957 -2.0419 20 1 -1.2039 -4.2557 -1.5051 21 1 0.0604 -5.0711 -3.4073 22 1 0.8803 -5.4454 -1.1564 23 1 -0.3634 0.4034 -0.9452 24 1 -0.3634 -1.0201 0.1232 25 1 -0.3633 0.6170 0.8219 26 1 2.0719 1.7452 -1.0247 27 1 1.3366 2.0274 0.5755 28 1 3.5211 2.3052 1.1658 29 1 3.4222 0.5436 1.3432 30 1 6.6050 0.8192 -0.3910 31 1 5.9476 1.4024 1.1569 32 1 5.6514 -0.2748 0.6396 33 1 3.8428 2.8655 -1.6176 34 1 4.9928 3.2916 -0.3276 35 1 5.5660 2.4538 -1.7898 36 1 6.2083 -0.4332 -1.6889 37 1 4.8017 1.3785 -3.8280 38 1 6.5633 0.8325 -3.8584 39 1 5.8115 -1.5901 -3.9111 40 1 4.0499 -1.0448 -3.8804 41 1 3.7845 -1.1295 0.1080 42 1 3.8025 -1.8513 -1.5202 43 1 1.3896 -2.9384 -4.0773 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221596510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:30 Heat of formation + Delta-G solvation = 46.868911 kcal Electronic energy + Delta-G solvation = -20813.532421 eV Core-core repulsion = 18087.950506 eV Total energy + Delta-G solvation = -2725.581916 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.42278 -36.65784 -34.98680 -32.70703 -31.37658 -29.17035 -27.46321 -26.91758 -24.65572 -23.55582 -22.29170 -21.55966 -20.58018 -19.12643 -17.80597 -16.44541 -15.83098 -14.93867 -14.77942 -14.44302 -13.98350 -13.73141 -13.44154 -13.15093 -12.64431 -12.37035 -12.13947 -11.89268 -11.65281 -11.26849 -11.19381 -11.11210 -10.98933 -10.81315 -10.76371 -10.65977 -10.43044 -10.35336 -9.98593 -9.72892 -9.65197 -9.61402 -9.33987 -8.85339 -8.40800 -7.26679 -6.82289 -5.95367 -3.99865 3.33454 3.38461 3.41276 4.39644 4.46979 4.51016 5.13016 5.26162 5.37411 5.47062 5.52329 5.58014 5.64044 5.78903 5.89987 5.96278 6.05184 6.10427 6.15027 6.18203 6.21953 6.35264 6.38004 6.46565 6.48107 6.58315 6.61131 6.67173 6.70043 6.77594 6.90846 6.97391 7.04929 7.13248 7.35414 7.79330 7.93098 8.08649 8.16356 8.27206 8.59963 8.94955 9.20393 9.66419 11.10563 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021231 B = 0.009201 C = 0.007192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.523577 B = 3042.428149 C = 3892.252500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.550 5.550 3 C 0.066 3.934 4 C -0.102 4.102 5 C 0.116 3.884 6 C -0.173 4.173 7 C -0.133 4.133 8 N -0.509 5.509 9 C 0.016 3.984 10 C -0.176 4.176 11 C -0.163 4.163 12 C 0.089 3.911 13 C 0.224 3.776 14 H 0.023 0.977 15 C -0.509 4.509 16 H 0.058 0.942 17 C 0.066 3.934 18 N -0.882 5.882 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.278 1.278 23 H 0.008 0.992 24 H 0.077 0.923 25 H 0.034 0.966 26 H 0.040 0.960 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.119 0.881 41 H 0.021 0.979 42 H 0.071 0.929 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.336 7.327 3.223 10.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.275 5.275 3 C -0.061 4.061 4 C -0.141 4.141 5 C 0.027 3.973 6 C -0.232 4.232 7 C -0.191 4.191 8 N -0.233 5.233 9 C -0.093 4.093 10 C -0.214 4.214 11 C -0.201 4.201 12 C -0.039 4.039 13 C 0.115 3.885 14 H 0.041 0.959 15 C -0.549 4.549 16 H 0.076 0.924 17 C -0.137 4.137 18 N -0.519 5.519 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.204 1.204 23 H 0.027 0.973 24 H 0.095 0.905 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.138 0.862 41 H 0.039 0.961 42 H 0.089 0.911 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.168 7.274 3.132 10.039 hybrid contribution -0.059 -1.017 -0.273 1.054 sum 6.109 6.257 2.859 9.201 Atomic orbital electron populations 1.22054 0.88278 1.02001 0.97170 1.59395 1.06782 1.09536 1.51806 1.21654 0.94450 0.90948 0.99091 1.21439 0.94293 1.01089 0.97249 1.21274 0.92926 0.92531 0.90535 1.22479 0.99036 1.01390 1.00297 1.21876 1.01720 0.95536 0.99918 1.60834 1.23468 1.15035 1.23968 1.22251 0.93983 1.04430 0.88659 1.22983 1.00611 0.96070 1.01697 1.23085 1.03992 0.93672 0.99326 1.22140 0.96266 0.89420 0.96031 1.18150 0.89675 0.91738 0.88964 0.95885 1.21110 1.38941 1.01949 0.92869 0.92428 1.24950 0.95583 0.97586 0.95601 1.69964 1.45156 1.38544 0.98277 0.86735 0.80639 0.84171 0.76856 1.20379 1.21494 1.20385 0.97327 0.90464 0.94742 0.94185 0.93080 0.92548 0.91189 0.92760 0.92995 0.92805 0.92352 0.93492 0.92797 0.90811 0.88850 0.90276 0.90125 0.86222 0.96099 0.91064 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.11 9.08 60.06 0.55 1.66 16 2 N -0.55 -12.16 4.15 -241.16 -1.00 -13.16 16 3 C 0.07 1.26 5.30 -4.38 -0.02 1.23 16 4 C -0.10 -1.73 4.11 -27.47 -0.11 -1.84 16 5 C 0.12 1.93 0.35 -130.60 -0.05 1.89 16 6 C -0.17 -2.59 7.32 37.15 0.27 -2.32 16 7 C -0.13 -1.95 8.12 37.16 0.30 -1.65 16 8 N -0.51 -9.93 3.68 -210.93 -0.78 -10.70 16 9 C 0.02 0.28 3.67 -67.71 -0.25 0.03 16 10 C -0.18 -2.82 9.07 -26.69 -0.24 -3.06 16 11 C -0.16 -3.00 9.77 -26.69 -0.26 -3.26 16 12 C 0.09 2.03 4.52 -4.44 -0.02 2.01 16 13 C 0.22 5.54 1.59 -71.79 -0.11 5.43 16 14 H 0.02 0.67 7.41 -51.93 -0.38 0.29 16 15 C -0.51 -13.66 6.51 -34.44 -0.22 -13.88 16 16 H 0.06 1.57 7.42 -52.48 -0.39 1.18 16 17 C 0.07 1.77 5.45 -17.82 -0.10 1.68 16 18 N -0.88 -24.59 12.90 55.43 0.71 -23.88 16 19 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 24 H 0.08 1.73 6.41 -51.93 -0.33 1.39 16 25 H 0.03 0.62 7.90 -51.93 -0.41 0.21 16 26 H 0.04 0.82 6.78 -51.93 -0.35 0.47 16 27 H 0.05 0.87 7.71 -51.93 -0.40 0.47 16 28 H 0.06 0.81 7.91 -51.93 -0.41 0.40 16 29 H 0.07 1.29 7.07 -51.92 -0.37 0.92 16 30 H 0.05 0.77 6.61 -51.93 -0.34 0.43 16 31 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 32 H 0.05 0.87 7.17 -51.93 -0.37 0.50 16 33 H 0.06 0.91 7.39 -51.93 -0.38 0.53 16 34 H 0.05 0.59 8.05 -51.93 -0.42 0.18 16 35 H 0.05 0.77 6.52 -51.93 -0.34 0.43 16 36 H 0.07 1.26 6.25 -51.93 -0.32 0.94 16 37 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.12 2.67 8.14 -51.93 -0.42 2.25 16 41 H 0.02 0.48 6.07 -51.93 -0.31 0.16 16 42 H 0.07 1.80 7.01 -51.93 -0.36 1.44 16 43 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 317.23 15.07 4.78 4.78 Total: -1.00 -27.08 317.23 -9.15 -36.23 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.58 Total: 2.77 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -0.27 Total: -12.10 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: -1.06 Total: -47.75 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.08 -9.15 -36.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221596510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.097 kcal (2) G-P(sol) polarization free energy of solvation -27.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds