Wall clock time and date at job start Mon Mar 30 2020 03:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99908 * 2 1 4 4 N 1.46899 * 109.47196 * 124.99746 * 3 2 1 5 5 C 1.48082 * 110.99755 * 292.53583 * 4 3 2 6 6 C 1.46091 * 112.15352 * 156.47501 * 5 4 3 7 7 H 1.08999 * 108.94815 * 300.00372 * 6 5 4 8 8 C 1.50700 * 108.94773 * 181.37995 * 6 5 4 9 9 H 1.07995 * 119.99726 * 294.93938 * 8 6 5 10 10 C 1.37873 * 119.99868 * 114.92800 * 8 6 5 11 11 N 1.31510 * 120.00471 * 353.04997 * 10 8 6 12 12 Si 1.86808 * 119.99707 * 173.04003 * 10 8 6 13 13 H 1.48501 * 109.46980 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46851 * 120.00405 * 12 10 8 15 15 H 1.48498 * 109.47207 * 240.00519 * 12 10 8 16 16 N 1.48086 * 112.15429 * 60.68874 * 6 5 4 17 17 C 1.46902 * 110.99968 * 156.47373 * 16 6 5 18 18 C 1.44170 * 109.90738 * 279.65701 * 16 6 5 19 19 C 1.54323 * 112.61756 * 94.34181 * 18 16 6 20 20 C 1.44182 * 110.99824 * 169.99673 * 4 3 2 21 21 C 1.53000 * 108.85377 * 96.71074 * 20 4 3 22 22 C 1.52999 * 108.77023 * 338.26892 * 20 4 3 23 23 H 1.08003 * 120.00021 * 0.02562 * 1 2 3 24 24 H 1.07995 * 120.00121 * 180.02562 * 1 2 3 25 25 H 1.07994 * 119.99434 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47220 * 4.99251 * 3 2 1 27 27 H 1.09005 * 109.46620 * 244.99451 * 3 2 1 28 28 H 1.09004 * 108.94572 * 277.16078 * 5 4 3 29 29 H 1.08998 * 108.94498 * 35.87972 * 5 4 3 30 30 H 0.97003 * 120.00184 * 179.97438 * 11 10 8 31 31 H 1.08999 * 109.47101 * 176.35879 * 17 16 6 32 32 H 1.09001 * 109.47174 * 296.36170 * 17 16 6 33 33 H 1.09003 * 109.46853 * 56.36017 * 17 16 6 34 34 H 1.09000 * 108.86044 * 333.53197 * 18 16 6 35 35 H 1.09003 * 108.85432 * 215.14944 * 18 16 6 36 36 H 1.09002 * 109.02621 * 79.49031 * 19 18 16 37 37 H 1.08992 * 109.03224 * 198.41839 * 19 18 16 38 38 H 1.08993 * 109.47109 * 188.98692 * 21 20 4 39 39 H 1.09006 * 109.47132 * 308.98840 * 21 20 4 40 40 H 1.09002 * 109.47381 * 68.98553 * 21 20 4 41 41 H 1.08993 * 109.47434 * 296.95645 * 22 20 4 42 42 H 1.09000 * 109.47207 * 56.96668 * 22 20 4 43 43 H 1.09005 * 109.46511 * 176.95715 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2653 1.3815 2.4214 6 6 3.0664 0.8686 3.5301 7 1 3.3319 -0.1685 3.3249 8 6 2.2449 0.9203 4.7925 9 1 1.9351 1.8727 5.1964 10 6 1.8886 -0.2484 5.4314 11 7 2.1461 -1.4095 4.8703 12 14 1.0403 -0.1823 7.0944 13 1 0.8657 1.2340 7.5051 14 1 -0.2892 -0.8369 6.9982 15 1 1.8695 -0.8916 8.1017 16 7 4.3072 1.6515 3.7316 17 6 4.7984 1.5142 5.1092 18 6 5.3092 1.2363 2.7819 19 6 5.3237 2.1139 1.5126 20 6 3.8956 2.4548 1.0375 21 6 3.3503 3.6004 1.8925 22 6 3.9558 2.9127 -0.4212 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8499 -0.9353 0.0004 26 1 1.3585 2.1317 0.0894 27 1 2.6214 1.4025 -0.9314 28 1 1.9896 2.4148 2.6324 29 1 1.3578 0.7837 2.3361 30 1 1.8957 -2.2317 5.3200 31 1 5.7442 2.0461 5.2123 32 1 4.0675 1.9356 5.7993 33 1 4.9481 0.4590 5.3381 34 1 5.1149 0.2032 2.4935 35 1 6.2886 1.2887 3.2575 36 1 5.8574 3.0399 1.7269 37 1 5.8437 1.5801 0.7172 38 1 3.9309 4.5032 1.7034 39 1 2.3060 3.7797 1.6365 40 1 3.4253 3.3344 2.9469 41 1 4.3682 2.1130 -1.0363 42 1 2.9514 3.1563 -0.7673 43 1 4.5909 3.7952 -0.4989 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221596710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:38 Heat of formation + Delta-G solvation = 64.064450 kcal Electronic energy + Delta-G solvation = -20782.590130 eV Core-core repulsion = 18057.753869 eV Total energy + Delta-G solvation = -2724.836261 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.76275 -36.16060 -34.14923 -32.74507 -31.43287 -29.04018 -28.64354 -26.92770 -24.82757 -24.55259 -23.02348 -21.89917 -19.36505 -18.99880 -17.63250 -16.57788 -15.90015 -15.18361 -14.63042 -14.56495 -14.10669 -13.75657 -13.23462 -13.01368 -12.59341 -12.55897 -12.28569 -12.15979 -11.68749 -11.47029 -11.25661 -11.18453 -10.98776 -10.82728 -10.66578 -10.52872 -10.36770 -10.24685 -10.15480 -9.71533 -9.62478 -9.51359 -8.97168 -8.77889 -8.52139 -7.36308 -6.85472 -6.06903 -4.10846 2.73052 3.25735 3.34961 3.38916 4.36489 4.71367 5.06817 5.31776 5.37352 5.44475 5.52371 5.60996 5.69859 5.81953 5.95207 6.02764 6.07291 6.15689 6.20312 6.28106 6.33024 6.37899 6.41652 6.48986 6.59009 6.69166 6.78994 6.81699 6.87760 6.94757 7.06617 7.12648 7.17740 7.29704 7.54506 7.75436 7.83558 8.01204 8.06031 8.17310 8.43966 8.80551 9.07226 9.54002 11.00159 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019844 B = 0.009246 C = 0.007120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.690227 B = 3027.584917 C = 3931.772238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C 0.076 3.924 4 N -0.526 5.526 5 C 0.070 3.930 6 C 0.193 3.807 7 H 0.052 0.948 8 C -0.511 4.511 9 H 0.057 0.943 10 C 0.069 3.931 11 N -0.885 5.885 12 Si 0.888 3.112 13 H -0.271 1.271 14 H -0.285 1.285 15 H -0.284 1.284 16 N -0.540 5.540 17 C 0.056 3.944 18 C 0.065 3.935 19 C -0.086 4.086 20 C 0.121 3.879 21 C -0.182 4.182 22 C -0.157 4.157 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.110 0.890 26 H 0.028 0.972 27 H 0.082 0.918 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.261 0.739 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.016 0.984 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.035 0.965 39 H 0.036 0.964 40 H 0.114 0.886 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.456 5.557 -8.037 10.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.145 4.145 3 C -0.052 4.052 4 N -0.250 5.250 5 C -0.056 4.056 6 C 0.088 3.912 7 H 0.070 0.930 8 C -0.551 4.551 9 H 0.076 0.924 10 C -0.134 4.134 11 N -0.523 5.523 12 Si 0.715 3.285 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.210 1.210 16 N -0.265 5.265 17 C -0.092 4.092 18 C -0.065 4.065 19 C -0.125 4.125 20 C 0.031 3.969 21 C -0.241 4.241 22 C -0.214 4.214 23 H 0.107 0.893 24 H 0.112 0.888 25 H 0.128 0.872 26 H 0.046 0.954 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.035 0.965 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.133 0.867 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.619 5.422 -8.111 10.102 hybrid contribution -0.802 -0.264 1.060 1.355 sum 1.817 5.157 -7.051 8.923 Atomic orbital electron populations 1.23694 0.95998 1.01169 1.03375 1.22923 0.95445 0.98907 0.97211 1.21436 0.94223 0.93884 0.95610 1.61953 1.18288 1.42007 1.02724 1.21553 0.96783 1.00402 0.86883 1.18489 0.86483 0.93557 0.92652 0.92995 1.21053 1.33060 0.92496 1.08471 0.92446 1.24983 0.95343 0.95590 0.97511 1.69954 1.47176 0.97336 1.37789 0.86606 0.79212 0.78266 0.84375 1.19575 1.21072 1.20959 1.61789 1.05307 1.57170 1.02254 1.21985 0.97222 0.98544 0.91419 1.21649 0.94408 0.97382 0.93052 1.21970 0.94714 0.98938 0.96926 1.20548 0.93836 0.89509 0.93022 1.22834 0.98331 0.97019 1.05868 1.22393 1.01253 1.00628 0.97164 0.89285 0.88849 0.87202 0.95414 0.90035 0.93765 0.91810 0.92912 0.95239 0.91069 0.96487 0.94519 0.94302 0.92924 0.93097 0.94572 0.94529 0.86739 0.92456 0.92676 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.17 14.25 29.01 0.41 -2.76 16 2 C -0.13 -2.12 8.52 -36.03 -0.31 -2.43 16 3 C 0.08 1.25 4.09 -4.98 -0.02 1.23 16 4 N -0.53 -9.98 4.22 -224.58 -0.95 -10.92 16 5 C 0.07 1.55 3.83 -6.45 -0.02 1.53 16 6 C 0.19 4.72 2.05 -71.49 -0.15 4.57 16 7 H 0.05 1.48 6.14 -51.93 -0.32 1.16 16 8 C -0.51 -13.46 6.03 -34.44 -0.21 -13.67 16 9 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 10 C 0.07 1.87 5.45 -17.82 -0.10 1.77 16 11 N -0.88 -25.12 12.62 55.43 0.70 -24.42 16 12 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 13 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 N -0.54 -11.71 2.48 -240.68 -0.60 -12.31 16 17 C 0.06 1.21 8.55 60.07 0.51 1.72 16 18 C 0.07 1.28 5.28 -4.59 -0.02 1.26 16 19 C -0.09 -1.46 5.26 -25.35 -0.13 -1.59 16 20 C 0.12 2.06 0.80 -132.36 -0.11 1.96 16 21 C -0.18 -3.21 6.75 37.16 0.25 -2.96 16 22 C -0.16 -2.19 6.90 37.16 0.26 -1.93 16 23 H 0.09 1.30 7.84 -52.48 -0.41 0.89 16 24 H 0.09 1.35 8.06 -52.49 -0.42 0.93 16 25 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 26 H 0.03 0.46 7.52 -51.93 -0.39 0.07 16 27 H 0.08 1.20 5.52 -51.93 -0.29 0.91 16 28 H 0.04 0.99 4.58 -51.93 -0.24 0.75 16 29 H 0.06 1.54 6.78 -51.93 -0.35 1.19 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.03 0.54 7.87 -51.93 -0.41 0.13 16 32 H 0.07 1.58 6.81 -51.93 -0.35 1.23 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.04 0.81 7.17 -51.93 -0.37 0.44 16 35 H 0.04 0.71 7.42 -51.93 -0.39 0.32 16 36 H 0.05 0.83 7.98 -51.93 -0.41 0.42 16 37 H 0.05 0.80 7.96 -51.93 -0.41 0.38 16 38 H 0.04 0.57 8.13 -51.93 -0.42 0.15 16 39 H 0.04 0.64 7.24 -51.93 -0.38 0.26 16 40 H 0.11 2.33 4.63 -51.93 -0.24 2.08 16 41 H 0.06 0.77 7.53 -51.93 -0.39 0.38 16 42 H 0.05 0.74 6.25 -51.93 -0.32 0.41 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 313.74 15.07 4.73 4.73 Total: -1.00 -27.07 313.74 -8.10 -35.17 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.33 Total: 3.20 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 0.37 Total: -11.31 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -0.85 Total: -47.65 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.07 -8.10 -35.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221596710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.239 kcal (2) G-P(sol) polarization free energy of solvation -27.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds