Wall clock time and date at job start Mon Mar 30 2020 03:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.44189 * 110.99997 * 2 1 4 4 C 1.54317 * 112.61714 * 217.52650 * 3 2 1 5 5 C 1.54321 * 111.72369 * 318.91708 * 4 3 2 6 6 C 1.53006 * 108.85086 * 198.11518 * 5 4 3 7 7 C 1.53005 * 108.77159 * 79.67703 * 5 4 3 8 8 N 1.44178 * 112.60910 * 318.92281 * 5 4 3 9 9 C 1.46906 * 110.99900 * 217.52354 * 8 5 4 10 10 C 1.52998 * 117.49838 * 142.45755 * 9 8 5 11 11 C 1.52999 * 117.49554 * 73.79965 * 9 8 5 12 12 C 1.48079 * 109.89439 * 94.35578 * 8 5 4 13 13 H 1.08998 * 108.94615 * 40.32493 * 12 8 5 14 14 C 1.50704 * 108.87033 * 158.98636 * 12 8 5 15 15 H 1.07997 * 120.00045 * 8.28275 * 14 12 8 16 16 C 1.37876 * 119.99836 * 188.27743 * 14 12 8 17 17 N 1.31520 * 120.00222 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99879 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47137 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47147 * 120.00169 * 18 16 14 21 21 H 1.48503 * 109.47230 * 239.99860 * 18 16 14 22 22 C 1.46086 * 112.16103 * 279.63074 * 12 8 5 23 23 H 1.08997 * 109.47123 * 297.43833 * 1 2 3 24 24 H 1.08998 * 109.46837 * 57.43707 * 1 2 3 25 25 H 1.08994 * 109.46878 * 177.43615 * 1 2 3 26 26 H 1.08995 * 108.84984 * 96.71726 * 3 2 1 27 27 H 1.09002 * 108.85192 * 338.33460 * 3 2 1 28 28 H 1.09003 * 109.03313 * 198.33982 * 4 3 2 29 29 H 1.08996 * 108.97437 * 79.45670 * 4 3 2 30 30 H 1.09004 * 109.46706 * 178.02075 * 6 5 4 31 31 H 1.08996 * 109.47099 * 298.02332 * 6 5 4 32 32 H 1.08998 * 109.47055 * 58.02966 * 6 5 4 33 33 H 1.09001 * 109.46699 * 305.60242 * 7 5 4 34 34 H 1.08993 * 109.47054 * 65.60496 * 7 5 4 35 35 H 1.08996 * 109.46424 * 185.60449 * 7 5 4 36 36 H 1.08996 * 115.55085 * 288.13208 * 9 8 5 37 37 H 1.08999 * 117.49832 * 0.02562 * 10 9 8 38 38 H 1.08999 * 117.49686 * 145.02116 * 10 9 8 39 39 H 1.09002 * 117.49709 * 214.98170 * 11 9 8 40 40 H 1.08999 * 117.50237 * 359.97438 * 11 9 8 41 41 H 0.97000 * 120.00077 * 179.97438 * 17 16 14 42 42 H 1.08998 * 108.94980 * 181.37695 * 22 12 8 43 43 H 1.09011 * 108.94256 * 300.00145 * 22 12 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9857 1.3461 0.0000 4 6 3.2531 1.4953 -0.8677 5 6 4.2082 0.2955 -0.6949 6 6 5.5981 0.6939 -1.1954 7 6 3.6933 -0.8697 -1.5424 8 7 4.3129 -0.1364 0.6767 9 6 5.6864 -0.5491 0.9952 10 6 6.2236 -0.2030 2.3853 11 6 6.7356 0.5527 1.1565 12 6 3.3554 -1.2365 0.9331 13 1 3.3465 -1.9056 0.0728 14 6 3.8107 -2.0062 2.1461 15 1 4.6294 -1.6354 2.7450 16 6 3.1820 -3.1837 2.4914 17 7 2.1853 -3.6355 1.7618 18 14 3.7459 -4.1374 3.9953 19 1 4.8761 -3.4218 4.6402 20 1 2.6211 -4.2544 4.9577 21 1 4.1884 -5.4940 3.5840 22 6 1.9997 -0.7441 1.1651 23 1 -0.3633 0.4735 0.9120 24 1 -0.3633 0.5531 -0.8661 25 1 -0.3633 -1.0266 -0.0460 26 1 2.2246 1.6316 1.0244 27 1 1.2170 2.0185 -0.3808 28 1 3.7745 2.4087 -0.5813 29 1 2.9592 1.5676 -1.9148 30 1 6.2896 -0.1352 -1.0455 31 1 5.5462 0.9365 -2.2568 32 1 5.9485 1.5641 -0.6405 33 1 2.6563 -1.0792 -1.2802 34 1 3.7551 -0.6061 -2.5981 35 1 4.3019 -1.7537 -1.3523 36 1 6.0094 -1.4905 0.5508 37 1 5.5579 0.3306 3.0637 38 1 6.9004 -0.9165 2.8553 39 1 7.7490 0.3360 0.8186 40 1 6.4069 1.5837 1.0259 41 1 1.7433 -4.4641 2.0045 42 1 1.3459 -1.5914 1.3716 43 1 2.0065 -0.0846 2.0331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221596806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:01 Heat of formation + Delta-G solvation = 60.402683 kcal Electronic energy + Delta-G solvation = -21145.978754 eV Core-core repulsion = 18420.983707 eV Total energy + Delta-G solvation = -2724.995047 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.34358 -38.20564 -35.86938 -35.46276 -32.90651 -30.25581 -29.16522 -28.02303 -27.26616 -25.30622 -23.42565 -22.90657 -22.06360 -21.00025 -18.99542 -18.39148 -17.19539 -16.86334 -16.16565 -16.08519 -15.69712 -15.12959 -15.02797 -14.52414 -14.15253 -14.05843 -13.88495 -13.29216 -13.00798 -12.97373 -12.91582 -12.67733 -12.62600 -12.31051 -12.27836 -11.96397 -11.86557 -11.74874 -11.67307 -11.43632 -11.17591 -10.92685 -10.52662 -10.36739 -10.28038 -8.90304 -8.64133 -8.07102 -6.14128 1.38135 1.41597 1.51684 2.44163 3.12715 3.22537 3.30038 3.43905 4.09662 4.16790 4.28809 4.38551 4.40514 4.50782 4.52177 4.60535 4.64792 4.74578 4.85812 4.88922 4.94707 4.96763 4.98966 5.03345 5.08839 5.11684 5.14926 5.22009 5.29872 5.37013 5.42207 5.51951 5.58380 5.62949 5.78573 5.86526 6.02220 6.24073 6.49551 6.55469 6.62493 7.03606 7.12500 7.54771 9.00097 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018085 B = 0.011288 C = 0.007943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.908967 B = 2480.000220 C = 3524.460948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.546 5.546 3 C 0.066 3.934 4 C -0.084 4.084 5 C 0.111 3.889 6 C -0.146 4.146 7 C -0.167 4.167 8 N -0.501 5.501 9 C 0.037 3.963 10 C -0.171 4.171 11 C -0.148 4.148 12 C 0.208 3.792 13 H 0.011 0.989 14 C -0.523 4.523 15 H 0.077 0.923 16 C 0.012 3.988 17 N -0.921 5.921 18 Si 0.946 3.054 19 H -0.266 1.266 20 H -0.285 1.285 21 H -0.286 1.286 22 C 0.096 3.904 23 H 0.017 0.983 24 H 0.084 0.916 25 H 0.051 0.949 26 H 0.019 0.981 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.012 0.988 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.257 0.743 42 H 0.065 0.935 43 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.419 9.904 -4.769 11.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.270 5.270 3 C -0.063 4.063 4 C -0.122 4.122 5 C 0.021 3.979 6 C -0.203 4.203 7 C -0.225 4.225 8 N -0.225 5.225 9 C -0.073 4.073 10 C -0.209 4.209 11 C -0.185 4.185 12 C 0.101 3.899 13 H 0.029 0.971 14 C -0.562 4.562 15 H 0.095 0.905 16 C -0.186 4.186 17 N -0.561 5.561 18 Si 0.773 3.227 19 H -0.191 1.191 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.031 4.031 23 H 0.035 0.965 24 H 0.102 0.898 25 H 0.070 0.930 26 H 0.037 0.963 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.032 0.968 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 3.318 9.936 -4.901 11.565 hybrid contribution -0.243 -1.547 1.251 2.004 sum 3.075 8.389 -3.650 9.652 Atomic orbital electron populations 1.22386 0.87555 1.01377 1.00236 1.61645 1.07436 1.14902 1.42998 1.21753 0.97029 0.89014 0.98492 1.21977 0.94320 0.96674 0.99259 1.20730 0.95370 0.94382 0.87416 1.22395 0.95446 1.01828 1.00667 1.22650 1.03571 0.97456 0.98820 1.61645 1.03071 1.36903 1.20893 1.21660 0.89331 0.96102 1.00162 1.22926 1.02738 1.03386 0.91841 1.23315 0.97648 0.97052 1.00486 1.18240 0.88484 0.87495 0.95642 0.97146 1.22033 1.17011 1.05713 1.11468 0.90462 1.25637 0.95420 0.98453 0.99125 1.70044 1.23920 1.22051 1.40134 0.85679 0.78254 0.78492 0.80282 1.19057 1.21171 1.21243 1.20983 0.98467 0.95720 0.87945 0.96453 0.89751 0.93010 0.96266 0.91161 0.91054 0.91199 0.93153 0.92242 0.90698 0.89885 0.93149 0.96840 0.93202 0.90385 0.89653 0.87492 0.87917 0.93365 0.91698 0.98718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.11 9.24 127.69 1.18 2.29 16 2 N -0.55 -21.63 2.53 -936.62 -2.37 -24.00 16 3 C 0.07 2.25 5.28 87.26 0.46 2.71 16 4 C -0.08 -2.57 5.26 31.49 0.17 -2.41 16 5 C 0.11 3.96 0.80 4.49 0.00 3.96 16 6 C -0.15 -4.24 6.71 71.98 0.48 -3.76 16 7 C -0.17 -6.58 6.74 71.98 0.49 -6.09 16 8 N -0.50 -20.83 4.30 -814.21 -3.50 -24.33 16 9 C 0.04 1.43 2.25 44.91 0.10 1.53 16 10 C -0.17 -6.17 8.25 30.62 0.25 -5.92 16 11 C -0.15 -4.36 7.69 30.62 0.24 -4.13 16 12 C 0.21 10.35 1.39 41.82 0.06 10.40 16 13 H 0.01 0.62 4.56 -2.39 -0.01 0.61 16 14 C -0.52 -28.24 7.63 25.60 0.20 -28.04 16 15 H 0.08 4.08 4.71 -2.91 -0.01 4.07 16 16 C 0.01 0.65 5.29 84.65 0.45 1.10 16 17 N -0.92 -53.10 11.62 21.45 0.25 -52.86 16 18 Si 0.95 44.12 29.54 68.60 2.03 46.15 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 22 C 0.10 4.67 4.21 83.95 0.35 5.03 16 23 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.08 2.32 7.98 -2.39 -0.02 2.30 16 25 H 0.05 1.88 8.06 -2.39 -0.02 1.86 16 26 H 0.02 0.73 7.17 -2.39 -0.02 0.71 16 27 H 0.07 2.00 7.49 -2.39 -0.02 1.98 16 28 H 0.07 1.94 7.94 -2.39 -0.02 1.93 16 29 H 0.07 1.93 7.97 -2.39 -0.02 1.91 16 30 H 0.05 1.55 5.99 -2.38 -0.01 1.53 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.95 5.63 -2.39 -0.01 1.94 16 33 H 0.08 3.68 4.61 -2.39 -0.01 3.67 16 34 H 0.05 1.70 8.13 -2.39 -0.02 1.69 16 35 H 0.01 0.57 7.25 -2.39 -0.02 0.55 16 36 H 0.05 2.19 8.00 -2.39 -0.02 2.17 16 37 H 0.08 3.03 8.13 -2.39 -0.02 3.01 16 38 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 39 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.10 2.84 6.73 -2.39 -0.02 2.83 16 41 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 42 H 0.06 3.57 5.88 -2.39 -0.01 3.55 16 43 H -0.01 -0.28 7.37 -2.38 -0.02 -0.30 16 Total: -1.00 -59.46 304.50 1.80 -57.67 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.97 Total: 20.71 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 4.42 Total: -23.33 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -5.63 Total: -101.19 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -59.46 1.80 -57.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221596806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.069 kcal (2) G-P(sol) polarization free energy of solvation -59.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds