Wall clock time and date at job start Mon Mar 30 2020 03:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48010 * 111.02939 * 2 1 4 4 C 1.53700 * 112.49839 * 192.28177 * 3 2 1 5 5 C 1.50798 * 112.03415 * 318.42059 * 4 3 2 6 6 C 1.53000 * 109.63522 * 212.30054 * 5 4 3 7 7 C 1.52995 * 109.63541 * 332.70322 * 5 4 3 8 8 N 1.47914 * 108.49124 * 92.60038 * 5 4 3 9 9 C 1.46902 * 110.99749 * 153.76820 * 8 5 4 10 10 C 1.52998 * 117.50284 * 278.69994 * 9 8 5 11 11 C 1.52997 * 117.49864 * 210.03853 * 9 8 5 12 12 C 1.40013 * 114.07142 * 280.05942 * 8 5 4 13 13 H 1.09005 * 108.96013 * 301.14778 * 12 8 5 14 14 C 1.50690 * 108.96137 * 182.39579 * 12 8 5 15 15 H 1.07996 * 120.00088 * 354.19825 * 14 12 8 16 16 C 1.37878 * 120.00154 * 174.19900 * 14 12 8 17 17 N 1.31518 * 119.99798 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00108 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47055 * 90.00575 * 18 16 14 20 20 H 1.48507 * 109.47077 * 210.00115 * 18 16 14 21 21 H 1.48502 * 109.47511 * 330.00211 * 18 16 14 22 22 C 1.44578 * 110.99527 * 232.22127 * 2 1 3 23 23 H 1.08999 * 109.47278 * 187.77879 * 1 2 3 24 24 H 1.09001 * 109.46958 * 307.77909 * 1 2 3 25 25 H 1.08998 * 109.47075 * 67.77024 * 1 2 3 26 26 H 1.09000 * 108.93282 * 71.45661 * 3 2 1 27 27 H 1.08999 * 108.79210 * 313.01193 * 3 2 1 28 28 H 1.09002 * 108.95017 * 197.79173 * 4 3 2 29 29 H 1.08993 * 108.95554 * 79.06077 * 4 3 2 30 30 H 1.08999 * 109.46817 * 60.00317 * 6 5 4 31 31 H 1.08998 * 109.47452 * 180.02562 * 6 5 4 32 32 H 1.09004 * 109.46866 * 300.00512 * 6 5 4 33 33 H 1.08998 * 109.47643 * 68.32380 * 7 5 4 34 34 H 1.09000 * 109.47184 * 188.33184 * 7 5 4 35 35 H 1.09003 * 109.46811 * 308.32473 * 7 5 4 36 36 H 1.09010 * 115.55053 * 64.37043 * 9 8 5 37 37 H 1.09005 * 117.49737 * 359.97438 * 10 9 8 38 38 H 1.09000 * 117.50292 * 145.01555 * 10 9 8 39 39 H 1.09003 * 117.49689 * 214.97824 * 11 9 8 40 40 H 1.08996 * 117.49952 * 359.97438 * 11 9 8 41 41 H 0.97004 * 119.99848 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.56962 * 100.53825 * 22 2 1 43 43 H 1.08996 * 109.67864 * 340.22677 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0001 1.3815 0.0000 4 6 3.5063 1.4326 -0.3021 5 6 4.2631 0.3386 0.4081 6 6 5.6668 0.8322 0.7642 7 6 3.5180 -0.0570 1.6845 8 7 4.3610 -0.8276 -0.4966 9 6 5.5406 -1.6432 -0.1782 10 6 6.8901 -1.1796 -0.7304 11 6 6.2005 -2.4094 -1.3264 12 6 3.2039 -1.6146 -0.5410 13 1 2.9838 -1.9777 0.4630 14 6 3.4490 -2.7949 -1.4452 15 1 4.3706 -2.8651 -2.0037 16 6 2.4965 -3.7853 -1.5595 17 7 1.3739 -3.6995 -0.8798 18 14 2.8000 -5.2480 -2.6810 19 1 3.4724 -6.3279 -1.9149 20 1 1.5034 -5.7470 -3.2056 21 1 3.6653 -4.8322 -3.8139 22 6 1.9870 -0.8269 -1.0669 23 1 -0.3634 -1.0182 0.1391 24 1 -0.3633 0.6296 0.8123 25 1 -0.3633 0.3888 -0.9513 26 1 1.8210 1.8293 0.9775 27 1 1.4691 1.9618 -0.7545 28 1 3.8986 2.3985 0.0161 29 1 3.6557 1.3267 -1.3765 30 1 5.5914 1.7021 1.4166 31 1 6.2116 0.0394 1.2769 32 1 6.1976 1.1065 -0.1474 33 1 2.5826 -0.5507 1.4211 34 1 4.1360 -0.7379 2.2697 35 1 3.3047 0.8359 2.2721 36 1 5.5343 -2.1157 0.8041 37 1 6.9026 -0.2695 -1.3303 38 1 7.7716 -1.3473 -0.1116 39 1 6.6287 -3.3857 -1.0994 40 1 5.7592 -2.3086 -2.3179 41 1 0.7036 -4.3961 -0.9605 42 1 2.2932 -0.1964 -1.9016 43 1 1.2168 -1.5232 -1.3985 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221596865.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:05 Heat of formation + Delta-G solvation = 73.885774 kcal Electronic energy + Delta-G solvation = -21153.338818 eV Core-core repulsion = 18428.928441 eV Total energy + Delta-G solvation = -2724.410376 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.76016 -36.58495 -34.37859 -33.40588 -31.21695 -28.89729 -27.00622 -26.57234 -25.40679 -23.97786 -21.86422 -21.47709 -20.54000 -19.03326 -17.56425 -16.55444 -15.26512 -15.13810 -14.69317 -14.52148 -14.12140 -14.00844 -13.43862 -12.85452 -12.49852 -12.40282 -12.05939 -11.89415 -11.40151 -11.32744 -11.17477 -11.05813 -11.00047 -10.74020 -10.56709 -10.47067 -10.38762 -10.11945 -9.96903 -9.78966 -9.67813 -9.35045 -8.93890 -8.51122 -8.32250 -7.13991 -6.82583 -5.91975 -3.94474 3.33396 3.40697 3.43456 4.45723 4.71250 4.81502 4.87320 5.40496 5.44701 5.58304 5.70838 5.80335 5.87305 5.87838 5.95172 6.03588 6.12122 6.18371 6.25398 6.29077 6.29737 6.35814 6.40335 6.52369 6.55453 6.60965 6.72746 6.76954 6.80028 6.86338 6.97864 7.00497 7.09105 7.36397 7.53123 7.87334 7.97466 8.05543 8.24144 8.28845 8.63343 8.93590 9.21811 9.71086 11.14356 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018245 B = 0.011601 C = 0.007733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.311312 B = 2412.922734 C = 3619.875083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.545 5.545 3 C 0.065 3.935 4 C -0.104 4.104 5 C 0.123 3.877 6 C -0.139 4.139 7 C -0.193 4.193 8 N -0.507 5.507 9 C 0.056 3.944 10 C -0.194 4.194 11 C -0.151 4.151 12 C 0.229 3.771 13 H 0.011 0.989 14 C -0.513 4.513 15 H 0.082 0.918 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.886 3.114 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.275 1.275 22 C 0.075 3.925 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.010 0.990 26 H 0.058 0.942 27 H 0.018 0.982 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.127 0.873 34 H 0.028 0.972 35 H 0.034 0.966 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.257 0.743 42 H 0.016 0.984 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.941 7.960 2.116 9.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.269 5.269 3 C -0.062 4.062 4 C -0.142 4.142 5 C 0.034 3.966 6 C -0.196 4.196 7 C -0.252 4.252 8 N -0.232 5.232 9 C -0.053 4.053 10 C -0.232 4.232 11 C -0.188 4.188 12 C 0.121 3.879 13 H 0.028 0.972 14 C -0.552 4.552 15 H 0.100 0.900 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.715 3.285 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.200 1.200 22 C -0.053 4.053 23 H 0.092 0.908 24 H 0.067 0.933 25 H 0.029 0.971 26 H 0.076 0.924 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.145 0.855 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.123 0.877 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.942 7.838 2.092 9.019 hybrid contribution -0.410 -0.794 -0.486 1.018 sum 3.532 7.044 1.606 8.041 Atomic orbital electron populations 1.22307 0.88739 1.02156 0.98164 1.60988 1.06055 1.10579 1.49322 1.22298 0.94920 0.89856 0.99152 1.21441 0.93775 0.97468 1.01555 1.20487 0.93490 0.91415 0.91195 1.22097 0.96884 0.99952 1.00669 1.22961 1.05054 1.00542 0.96607 1.59391 1.04361 1.09598 1.49813 1.21672 0.89009 0.99042 0.95541 1.23211 0.95419 0.99568 1.04969 1.23037 1.01899 0.94138 0.99722 1.18057 0.84264 0.89232 0.96377 0.97165 1.21895 1.03865 1.03550 1.25876 0.90026 1.24962 0.95359 0.97991 0.95934 1.69965 1.07506 1.33803 1.41680 0.86684 0.77349 0.83299 0.81169 1.20968 1.21583 1.19987 1.22190 0.99876 0.93734 0.89471 0.90801 0.93342 0.97108 0.92355 0.96372 0.92449 0.91357 0.93862 0.92582 0.92451 0.85550 0.95264 0.94655 0.91544 0.89218 0.90448 0.90216 0.87674 0.93354 0.96570 0.88497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.28 60.06 0.56 1.19 16 2 N -0.54 -10.98 2.11 -242.64 -0.51 -11.49 16 3 C 0.07 1.13 4.69 -2.85 -0.01 1.12 16 4 C -0.10 -1.79 4.78 -27.47 -0.13 -1.92 16 5 C 0.12 2.25 0.72 -132.15 -0.09 2.15 16 6 C -0.14 -2.17 6.81 37.16 0.25 -1.92 16 7 C -0.19 -3.69 6.73 37.15 0.25 -3.44 16 8 N -0.51 -10.67 3.93 -209.40 -0.82 -11.50 16 9 C 0.06 1.12 3.14 -67.71 -0.21 0.90 16 10 C -0.19 -3.20 8.13 -26.69 -0.22 -3.42 16 11 C -0.15 -2.86 8.36 -26.70 -0.22 -3.08 16 12 C 0.23 5.56 1.27 -71.80 -0.09 5.47 16 13 H 0.01 0.30 6.20 -51.93 -0.32 -0.02 16 14 C -0.51 -13.42 7.53 -34.44 -0.26 -13.68 16 15 H 0.08 2.09 3.62 -52.49 -0.19 1.90 16 16 C 0.06 1.56 5.17 -17.82 -0.09 1.47 16 17 N -0.89 -24.69 11.63 55.43 0.64 -24.05 16 18 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.08 1.75 4.63 -4.44 -0.02 1.73 16 23 H 0.07 1.47 8.07 -51.93 -0.42 1.05 16 24 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 25 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.06 0.93 7.60 -51.93 -0.39 0.54 16 27 H 0.02 0.30 8.03 -51.93 -0.42 -0.12 16 28 H 0.06 0.84 7.71 -51.93 -0.40 0.44 16 29 H 0.07 1.27 7.22 -51.93 -0.38 0.90 16 30 H 0.04 0.60 8.09 -51.93 -0.42 0.18 16 31 H 0.06 0.89 6.38 -51.93 -0.33 0.56 16 32 H 0.06 0.87 6.53 -51.93 -0.34 0.53 16 33 H 0.13 2.76 3.67 -51.93 -0.19 2.57 16 34 H 0.03 0.56 8.13 -51.93 -0.42 0.14 16 35 H 0.03 0.60 7.66 -51.93 -0.40 0.20 16 36 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 37 H 0.09 1.46 7.04 -51.93 -0.37 1.10 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.11 2.16 6.43 -51.93 -0.33 1.83 16 41 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.02 0.38 6.93 -51.93 -0.36 0.02 16 43 H 0.10 2.53 5.54 -51.93 -0.29 2.24 16 LS Contribution 303.60 15.07 4.58 4.58 Total: -1.00 -26.71 303.60 -8.64 -35.35 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.21 Total: 4.52 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -0.29 Total: -13.41 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.69 Total: -47.04 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.71 -8.64 -35.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221596865.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.239 kcal (2) G-P(sol) polarization free energy of solvation -26.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds