Wall clock time and date at job start Mon Mar 30 2020 03:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99975 * 2 1 4 4 N 1.46900 * 109.47021 * 126.81932 * 3 2 1 5 5 C 1.48082 * 110.99893 * 48.76325 * 4 3 2 6 6 H 1.08999 * 108.93834 * 277.15787 * 5 4 3 7 7 C 1.50698 * 108.94860 * 35.87254 * 5 4 3 8 8 H 1.08000 * 119.99715 * 5.35957 * 7 5 4 9 9 C 1.37875 * 120.00134 * 185.35522 * 7 5 4 10 10 N 1.31511 * 119.99885 * 0.02562 * 9 7 5 11 11 Si 1.86801 * 120.00061 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46789 * 0.02562 * 11 9 7 13 13 H 1.48495 * 109.47025 * 120.00039 * 11 9 7 14 14 H 1.48499 * 109.47034 * 239.99868 * 11 9 7 15 15 C 1.46091 * 112.15425 * 156.47602 * 5 4 3 16 16 N 1.47991 * 112.07242 * 60.68602 * 15 5 4 17 17 C 1.46905 * 110.85028 * 156.41943 * 16 15 5 18 18 C 1.44172 * 109.96027 * 279.53490 * 16 15 5 19 19 C 1.54321 * 112.53106 * 94.43996 * 18 16 15 20 20 C 1.44173 * 110.99942 * 286.21761 * 4 3 2 21 21 C 1.53001 * 108.85445 * 96.71160 * 20 4 3 22 22 C 1.53001 * 108.77276 * 338.27320 * 20 4 3 23 23 H 1.07999 * 120.00181 * 180.02562 * 1 2 3 24 24 H 1.08005 * 119.99809 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.99506 * 180.02562 * 2 1 3 26 26 H 1.08995 * 109.47427 * 6.81921 * 3 2 1 27 27 H 1.09002 * 109.47125 * 246.81620 * 3 2 1 28 28 H 0.97002 * 120.00763 * 180.02562 * 10 9 7 29 29 H 1.09007 * 108.94622 * 181.37400 * 15 5 4 30 30 H 1.08999 * 108.94645 * 300.08484 * 15 5 4 31 31 H 1.08997 * 109.46688 * 178.56318 * 17 16 15 32 32 H 1.08999 * 109.46918 * 298.56319 * 17 16 15 33 33 H 1.09003 * 109.46980 * 58.56607 * 17 16 15 34 34 H 1.09000 * 108.85653 * 333.68311 * 18 16 15 35 35 H 1.09003 * 108.85647 * 215.18900 * 18 16 15 36 36 H 1.09004 * 109.02934 * 79.54828 * 19 18 16 37 37 H 1.09004 * 109.02904 * 198.38840 * 19 18 16 38 38 H 1.08996 * 109.47864 * 189.64470 * 21 20 4 39 39 H 1.09001 * 109.47122 * 309.65076 * 21 20 4 40 40 H 1.09002 * 109.46914 * 69.64369 * 21 20 4 41 41 H 1.08995 * 109.47358 * 304.64554 * 22 20 4 42 42 H 1.09004 * 109.46898 * 64.64466 * 22 20 4 43 43 H 1.09000 * 109.47125 * 184.64172 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0271 1.3141 1.1087 5 6 3.8240 0.0662 1.1294 6 1 3.2537 -0.7094 1.6405 7 6 4.0835 -0.3722 -0.2889 8 1 3.7753 0.2544 -1.1127 9 6 4.7145 -1.5733 -0.5347 10 7 5.0893 -2.3365 0.4685 11 14 5.0355 -2.1170 -2.2928 12 1 4.5202 -1.0878 -3.2311 13 1 6.4961 -2.2875 -2.4993 14 1 4.3458 -3.4077 -2.5454 15 6 5.1039 0.2411 1.8117 16 7 4.9302 0.6426 3.2254 17 6 6.1109 0.2800 4.0208 18 6 4.6673 2.0578 3.3064 19 6 3.1582 2.3774 3.3500 20 6 2.3579 1.4901 2.3735 21 6 2.1438 0.1176 3.0149 22 6 0.9938 2.1362 2.1231 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9354 -0.0004 25 1 1.8499 -0.9353 -0.0004 26 1 1.3616 2.1299 0.1220 27 1 2.5956 1.4175 -0.9447 28 1 5.5336 -3.1813 0.2957 29 1 5.6558 -0.6983 1.7750 30 1 5.6788 1.0092 1.2943 31 1 5.9698 0.6081 5.0506 32 1 6.2454 -0.8014 3.9992 33 1 6.9933 0.7645 3.6028 34 1 5.1062 2.5479 2.4373 35 1 5.1371 2.4524 4.2074 36 1 2.7894 2.2138 4.3626 37 1 3.0087 3.4237 3.0835 38 1 1.4919 0.2195 3.8824 39 1 1.6825 -0.5539 2.2907 40 1 3.1046 -0.2908 3.3283 41 1 1.1278 3.0644 1.5676 42 1 0.3693 1.4543 1.5458 43 1 0.5123 2.3501 3.0773 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221596951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:07 Heat of formation + Delta-G solvation = 77.581249 kcal Electronic energy + Delta-G solvation = -21226.424331 eV Core-core repulsion = 18502.174202 eV Total energy + Delta-G solvation = -2724.250129 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.89794 -36.31306 -34.02922 -32.80567 -31.14688 -28.77259 -28.53552 -26.55487 -25.50380 -24.37978 -22.98576 -21.63885 -19.66008 -18.93310 -17.17347 -16.77549 -15.59974 -14.96250 -14.51758 -14.38693 -14.19857 -13.72900 -13.45897 -12.89787 -12.51827 -12.48252 -12.28340 -11.81388 -11.50481 -11.40487 -11.30188 -11.13372 -11.04404 -10.80562 -10.60599 -10.54165 -10.14029 -10.06088 -9.97283 -9.90882 -9.77648 -9.26126 -8.86911 -8.47534 -8.31731 -7.29696 -6.91493 -6.07342 -4.10152 3.06860 3.25748 3.34984 3.38679 4.36779 4.86423 5.11552 5.28662 5.51381 5.56692 5.75092 5.87553 5.90815 5.96347 5.99376 6.02430 6.18502 6.21921 6.30514 6.33918 6.38625 6.45481 6.55962 6.60179 6.68194 6.71271 6.73445 6.80282 6.84540 7.07967 7.19285 7.42992 7.45020 7.50341 7.59137 7.78145 7.86401 8.04705 8.11518 8.24488 8.39405 8.74862 9.00007 9.53976 10.98990 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018174 B = 0.011554 C = 0.007952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.278544 B = 2422.826246 C = 3520.464142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.132 4.132 3 C 0.084 3.916 4 N -0.521 5.521 5 C 0.198 3.802 6 H 0.044 0.956 7 C -0.511 4.511 8 H 0.068 0.932 9 C 0.060 3.940 10 N -0.890 5.890 11 Si 0.890 3.110 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.072 3.928 16 N -0.541 5.541 17 C 0.032 3.968 18 C 0.068 3.932 19 C -0.088 4.088 20 C 0.121 3.879 21 C -0.179 4.179 22 C -0.168 4.168 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.132 0.868 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.261 0.739 29 H 0.104 0.896 30 H 0.015 0.985 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.013 0.987 34 H 0.039 0.961 35 H 0.041 0.959 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.026 0.974 39 H 0.050 0.950 40 H 0.104 0.896 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.583 5.976 4.262 8.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.151 4.151 3 C -0.044 4.044 4 N -0.244 5.244 5 C 0.092 3.908 6 H 0.062 0.938 7 C -0.550 4.550 8 H 0.086 0.914 9 C -0.142 4.142 10 N -0.529 5.529 11 Si 0.718 3.282 12 H -0.197 1.197 13 H -0.212 1.212 14 H -0.212 1.212 15 C -0.055 4.055 16 N -0.265 5.265 17 C -0.117 4.117 18 C -0.062 4.062 19 C -0.127 4.127 20 C 0.030 3.970 21 C -0.237 4.237 22 C -0.225 4.225 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.149 0.851 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.032 0.968 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.069 0.931 40 H 0.122 0.878 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.539 5.970 4.429 8.233 hybrid contribution 0.381 -0.632 -1.112 1.334 sum -3.157 5.338 3.318 7.034 Atomic orbital electron populations 1.23580 0.96274 1.00110 1.08042 1.24227 0.95556 1.02351 0.93004 1.21422 0.93421 0.93123 0.96393 1.62077 1.21770 1.40099 1.00428 1.18531 0.90694 0.86069 0.95499 0.93845 1.21505 1.37830 1.03659 0.92050 0.91437 1.24927 0.95745 0.96620 0.96875 1.69866 1.40708 1.12334 1.30001 0.86556 0.77882 0.78556 0.85190 1.19743 1.21152 1.21150 1.21454 1.00315 1.01020 0.82679 1.61690 1.35985 1.15180 1.13617 1.22343 0.91467 1.01221 0.96638 1.21689 0.96070 0.89331 0.99082 1.21970 0.95055 0.97905 0.97759 1.20503 0.91206 0.94430 0.90867 1.22838 1.03918 0.98011 0.98980 1.22594 0.98060 1.01022 1.00852 0.89835 0.89799 0.85068 0.91824 0.90048 0.92942 0.87807 0.96633 0.93020 0.91629 0.96804 0.94292 0.94042 0.93055 0.93040 0.95522 0.93070 0.87777 0.92912 0.90900 0.93928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.11 12.70 29.01 0.37 -3.74 16 2 C -0.13 -2.59 5.70 -36.03 -0.21 -2.79 16 3 C 0.08 1.63 4.83 -4.98 -0.02 1.61 16 4 N -0.52 -10.79 4.42 -218.00 -0.96 -11.75 16 5 C 0.20 4.63 0.73 -71.49 -0.05 4.58 16 6 H 0.04 1.13 4.16 -51.93 -0.22 0.91 16 7 C -0.51 -12.94 5.95 -34.44 -0.20 -13.15 16 8 H 0.07 1.72 5.50 -52.49 -0.29 1.44 16 9 C 0.06 1.55 5.28 -17.82 -0.09 1.46 16 10 N -0.89 -23.96 11.41 55.43 0.63 -23.32 16 11 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 14 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.07 1.66 4.19 -6.50 -0.03 1.63 16 16 N -0.54 -10.74 2.52 -247.48 -0.62 -11.36 16 17 C 0.03 0.55 9.24 60.07 0.55 1.11 16 18 C 0.07 1.22 5.29 -4.59 -0.02 1.20 16 19 C -0.09 -1.50 5.25 -25.35 -0.13 -1.64 16 20 C 0.12 2.24 0.68 -132.37 -0.09 2.15 16 21 C -0.18 -3.54 6.67 37.16 0.25 -3.30 16 22 C -0.17 -2.73 6.81 37.16 0.25 -2.48 16 23 H 0.08 1.35 8.06 -52.49 -0.42 0.93 16 24 H 0.08 1.29 7.07 -52.48 -0.37 0.91 16 25 H 0.13 3.02 5.98 -52.49 -0.31 2.70 16 26 H 0.06 1.11 4.85 -51.93 -0.25 0.86 16 27 H 0.08 1.69 6.23 -51.93 -0.32 1.37 16 28 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.10 2.68 5.64 -51.92 -0.29 2.39 16 30 H 0.02 0.38 7.36 -51.93 -0.38 0.00 16 31 H 0.05 0.78 7.94 -51.93 -0.41 0.36 16 32 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 33 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.04 0.76 7.16 -51.93 -0.37 0.39 16 35 H 0.04 0.66 7.46 -51.93 -0.39 0.27 16 36 H 0.05 0.83 7.98 -51.93 -0.41 0.41 16 37 H 0.05 0.82 7.98 -51.93 -0.41 0.40 16 38 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 39 H 0.05 1.08 5.25 -51.93 -0.27 0.81 16 40 H 0.10 2.27 4.66 -51.93 -0.24 2.02 16 41 H 0.05 0.82 7.14 -51.93 -0.37 0.45 16 42 H 0.07 1.20 3.57 -51.93 -0.19 1.01 16 43 H 0.04 0.63 8.13 -51.93 -0.42 0.21 16 LS Contribution 297.32 15.07 4.48 4.48 Total: -1.00 -25.53 297.32 -7.68 -33.21 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.76 Total: 6.54 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 0.57 Total: -13.35 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.95 Total: -46.43 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -25.53 -7.68 -33.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221596951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.796 kcal (2) G-P(sol) polarization free energy of solvation -25.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds