Wall clock time and date at job start Mon Mar 30 2020 04:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00243 * 2 1 4 4 N 1.46892 * 109.47136 * 124.99803 * 3 2 1 5 5 C 1.40011 * 111.00224 * 42.02947 * 4 3 2 6 6 C 1.54206 * 112.08483 * 188.09795 * 5 4 3 7 7 H 1.09006 * 109.56935 * 41.12548 * 6 5 4 8 8 C 1.50700 * 109.57684 * 161.37434 * 6 5 4 9 9 H 1.07995 * 119.99975 * 56.02778 * 8 6 5 10 10 C 1.37877 * 119.99892 * 236.02362 * 8 6 5 11 11 N 1.31509 * 120.00331 * 0.02562 * 10 8 6 12 12 Si 1.86803 * 119.99656 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47254 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47026 * 120.00373 * 12 10 8 15 15 H 1.48507 * 109.46997 * 240.00159 * 12 10 8 16 16 N 1.44571 * 108.85519 * 281.19464 * 6 5 4 17 17 C 1.46905 * 110.99573 * 220.34159 * 16 6 5 18 18 C 1.48066 * 113.86412 * 94.22198 * 16 6 5 19 19 C 1.53697 * 112.46746 * 318.31554 * 18 16 6 20 20 C 1.53008 * 108.95305 * 79.22997 * 19 18 16 21 21 C 1.52992 * 108.95638 * 197.96490 * 19 18 16 22 22 C 1.47915 * 111.00071 * 170.00094 * 4 3 2 23 23 H 1.08005 * 120.00211 * 179.97438 * 1 2 3 24 24 H 1.07997 * 120.00206 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.99859 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.47262 * 4.99644 * 3 2 1 27 27 H 1.08998 * 109.46924 * 245.00066 * 3 2 1 28 28 H 1.09002 * 108.95874 * 308.76601 * 5 4 3 29 29 H 1.09001 * 108.96273 * 67.51262 * 5 4 3 30 30 H 0.97001 * 120.00206 * 180.02562 * 11 10 8 31 31 H 1.08995 * 109.47007 * 299.06546 * 17 16 6 32 32 H 1.08998 * 109.47033 * 59.07030 * 17 16 6 33 33 H 1.08998 * 109.47031 * 179.06550 * 17 16 6 34 34 H 1.08999 * 108.88370 * 197.54696 * 18 16 6 35 35 H 1.08993 * 108.88462 * 79.08543 * 18 16 6 36 36 H 1.08995 * 109.46855 * 35.59379 * 20 19 18 37 37 H 1.08996 * 109.46724 * 155.59845 * 20 19 18 38 38 H 1.08999 * 109.46987 * 275.59500 * 20 19 18 39 39 H 1.09000 * 109.46979 * 60.00636 * 21 19 18 40 40 H 1.09003 * 109.47083 * 180.02562 * 21 19 18 41 41 H 1.08993 * 109.47641 * 300.00394 * 21 19 18 42 42 H 1.08995 * 109.62850 * 34.07280 * 22 4 3 43 43 H 1.08997 * 109.79705 * 273.57886 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3319 1.1345 5 6 3.6387 0.0971 1.2852 6 6 4.4704 0.0308 2.5821 7 1 3.9162 0.4989 3.3956 8 6 4.7539 -1.4086 2.9271 9 1 5.2444 -2.0494 2.2094 10 6 4.3872 -1.9073 4.1591 11 7 3.7895 -1.1271 5.0329 12 14 4.7392 -3.6912 4.5869 13 1 5.4154 -4.3509 3.4412 14 1 5.6200 -3.7493 5.7811 15 1 3.4626 -4.3915 4.8789 16 7 5.7166 0.7336 2.3744 17 6 6.8362 0.0157 2.9982 18 6 5.6858 2.1488 2.8089 19 6 4.3748 2.8529 2.4243 20 6 3.2869 2.4590 3.4255 21 6 4.5858 4.3667 2.4903 22 6 3.9189 2.4837 1.0350 23 1 -0.5401 -0.9353 -0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8500 -0.9354 0.0004 26 1 1.3587 2.1316 0.0895 27 1 2.6213 1.4025 -0.9314 28 1 2.8877 -0.6927 1.3054 29 1 4.2995 -0.0647 0.4336 30 1 3.5319 -1.4778 5.8998 31 1 6.6671 -0.0580 4.0724 32 1 6.9085 -0.9850 2.5722 33 1 7.7636 0.5574 2.8127 34 1 6.5191 2.6779 2.3467 35 1 5.8026 2.1879 3.8918 36 1 3.7270 2.3524 4.4169 37 1 2.5188 3.2319 3.4500 38 1 2.8400 1.5121 3.1226 39 1 5.3753 4.6542 1.7959 40 1 3.6603 4.8748 2.2193 41 1 4.8721 4.6499 3.5032 42 1 3.4012 3.3295 0.5826 43 1 4.7817 2.2141 0.4260 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221597706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:45 Heat of formation + Delta-G solvation = 57.622035 kcal Electronic energy + Delta-G solvation = -20706.535176 eV Core-core repulsion = 17981.419551 eV Total energy + Delta-G solvation = -2725.115625 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.55614 -36.11755 -34.73017 -32.61867 -32.05708 -28.71852 -26.79839 -26.17632 -26.12885 -24.86667 -23.41976 -21.81202 -19.71710 -18.38969 -17.94553 -16.61383 -15.54714 -15.37802 -14.62647 -14.37992 -14.26711 -13.86329 -13.37445 -12.86737 -12.74821 -12.65187 -12.34865 -12.00571 -11.82796 -11.39590 -11.30121 -11.10325 -11.05828 -10.92572 -10.67945 -10.45902 -10.24914 -10.09496 -10.03489 -9.84777 -9.50904 -9.42394 -9.15633 -8.66079 -8.56698 -7.24713 -6.68049 -6.06476 -4.09299 2.61263 3.25732 3.34885 3.38564 4.37516 4.74630 5.07233 5.25902 5.30910 5.41147 5.53576 5.56733 5.78498 5.82402 5.99772 6.01904 6.11364 6.17732 6.19811 6.25042 6.35418 6.48218 6.53149 6.53814 6.63473 6.75244 6.83592 6.88358 6.91919 6.97041 7.02746 7.10684 7.20969 7.40003 7.55427 7.78384 7.81983 7.93058 8.07573 8.24868 8.63990 8.88694 9.10551 9.54881 11.01214 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016688 B = 0.009924 C = 0.007248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.435995 B = 2820.658066 C = 3862.171398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.141 4.141 3 C 0.085 3.915 4 N -0.538 5.538 5 C 0.076 3.924 6 C 0.175 3.825 7 H 0.092 0.908 8 C -0.511 4.511 9 H 0.055 0.945 10 C 0.069 3.931 11 N -0.886 5.886 12 Si 0.888 3.112 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.283 1.283 16 N -0.559 5.559 17 C 0.066 3.934 18 C 0.075 3.925 19 C -0.061 4.061 20 C -0.145 4.145 21 C -0.135 4.135 22 C 0.084 3.916 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.115 0.885 26 H 0.068 0.932 27 H 0.033 0.967 28 H 0.072 0.928 29 H 0.004 0.996 30 H 0.261 0.739 31 H 0.020 0.980 32 H 0.070 0.930 33 H 0.021 0.979 34 H 0.046 0.954 35 H 0.022 0.978 36 H 0.039 0.961 37 H 0.030 0.970 38 H 0.113 0.887 39 H 0.047 0.953 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.609 6.724 -6.432 9.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.159 4.159 3 C -0.042 4.042 4 N -0.261 5.261 5 C -0.053 4.053 6 C 0.069 3.931 7 H 0.110 0.890 8 C -0.551 4.551 9 H 0.073 0.927 10 C -0.134 4.134 11 N -0.524 5.524 12 Si 0.716 3.284 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.209 1.209 16 N -0.284 5.284 17 C -0.082 4.082 18 C -0.053 4.053 19 C -0.062 4.062 20 C -0.202 4.202 21 C -0.193 4.193 22 C -0.043 4.043 23 H 0.112 0.888 24 H 0.110 0.890 25 H 0.133 0.867 26 H 0.086 0.914 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.022 0.978 30 H 0.071 0.929 31 H 0.039 0.961 32 H 0.088 0.912 33 H 0.040 0.960 34 H 0.064 0.936 35 H 0.040 0.960 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.131 0.869 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.859 6.786 -6.328 9.463 hybrid contribution 0.564 -1.131 0.525 1.368 sum -1.295 5.655 -5.803 8.205 Atomic orbital electron populations 1.23681 0.95807 1.01273 1.02781 1.23091 0.96015 0.98778 0.98027 1.21203 0.95190 0.95359 0.92469 1.59586 1.21494 1.05324 1.39698 1.21438 0.96117 0.88606 0.99177 1.19857 0.86481 0.93454 0.93297 0.89043 1.21085 1.38760 0.95509 0.99735 0.92723 1.24964 0.94540 0.97433 0.96444 1.69906 1.40201 1.35341 1.06977 0.86597 0.78052 0.85324 0.78416 1.19667 1.21058 1.20948 1.61174 1.07212 1.00191 1.59862 1.21852 0.90770 0.98372 0.97232 1.22352 0.95150 0.90828 0.96952 1.20296 0.95960 0.93776 0.96183 1.22324 0.97045 1.04004 0.96788 1.21913 1.00778 0.95504 1.01148 1.21678 0.94306 0.92154 0.96193 0.88819 0.88983 0.86744 0.91358 0.94868 0.91034 0.97790 0.92866 0.96132 0.91171 0.95989 0.93559 0.95951 0.94167 0.95082 0.86899 0.93353 0.92982 0.93023 0.92484 0.93825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.76 14.32 29.02 0.42 -2.35 16 2 C -0.14 -2.24 8.36 -36.03 -0.30 -2.54 16 3 C 0.08 1.36 5.61 -4.98 -0.03 1.33 16 4 N -0.54 -10.21 2.48 -241.21 -0.60 -10.81 16 5 C 0.08 1.67 3.85 -6.75 -0.03 1.64 16 6 C 0.18 4.27 2.20 -69.48 -0.15 4.11 16 7 H 0.09 2.42 3.09 -51.93 -0.16 2.25 16 8 C -0.51 -13.54 5.71 -34.44 -0.20 -13.73 16 9 H 0.05 1.47 7.35 -52.49 -0.39 1.08 16 10 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 11 N -0.89 -24.92 12.61 55.43 0.70 -24.22 16 12 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 13 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 N -0.56 -12.61 4.20 -235.88 -0.99 -13.60 16 17 C 0.07 1.47 8.48 60.07 0.51 1.98 16 18 C 0.08 1.51 4.47 -2.82 -0.01 1.49 16 19 C -0.06 -1.10 0.72 -155.25 -0.11 -1.21 16 20 C -0.14 -2.90 7.08 37.16 0.26 -2.64 16 21 C -0.14 -1.96 7.97 37.15 0.30 -1.66 16 22 C 0.08 1.47 4.61 -4.37 -0.02 1.45 16 23 H 0.09 1.20 8.06 -52.48 -0.42 0.78 16 24 H 0.09 1.17 7.84 -52.49 -0.41 0.75 16 25 H 0.11 1.93 6.48 -52.48 -0.34 1.59 16 26 H 0.07 1.00 7.79 -51.93 -0.40 0.60 16 27 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.07 1.63 5.25 -51.93 -0.27 1.36 16 29 H 0.00 0.09 8.07 -51.93 -0.42 -0.33 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.02 0.49 8.02 -51.93 -0.42 0.08 16 32 H 0.07 1.61 6.45 -51.93 -0.34 1.28 16 33 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 34 H 0.05 0.85 7.95 -51.93 -0.41 0.44 16 35 H 0.02 0.48 7.51 -51.93 -0.39 0.09 16 36 H 0.04 0.87 7.54 -51.93 -0.39 0.47 16 37 H 0.03 0.56 7.90 -51.93 -0.41 0.14 16 38 H 0.11 2.60 3.99 -51.93 -0.21 2.40 16 39 H 0.05 0.64 8.11 -51.93 -0.42 0.22 16 40 H 0.05 0.69 8.00 -51.93 -0.42 0.28 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.88 7.39 -51.93 -0.38 0.49 16 43 H 0.04 0.82 7.59 -51.93 -0.39 0.42 16 LS Contribution 316.00 15.07 4.76 4.76 Total: -1.00 -27.32 316.00 -8.00 -35.32 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.39 Total: 3.01 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 0.54 Total: -10.36 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -0.89 Total: -48.62 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.32 -8.00 -35.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221597706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.945 kcal (2) G-P(sol) polarization free energy of solvation -27.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds