Wall clock time and date at job start Mon Mar 30 2020 04:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50709 * 119.99966 * 2 1 4 4 N 1.46898 * 109.46896 * 125.25627 * 3 2 1 5 5 C 1.47683 * 110.96099 * 68.52896 * 4 3 2 6 6 C 1.50782 * 111.94811 * 84.99301 * 5 4 3 7 7 H 1.08994 * 109.73846 * 334.86471 * 6 5 4 8 8 C 1.50708 * 109.73476 * 214.21695 * 6 5 4 9 9 H 1.07991 * 120.00325 * 305.77078 * 8 6 5 10 10 C 1.37878 * 119.99384 * 125.76510 * 8 6 5 11 11 N 1.31514 * 119.99630 * 175.45215 * 10 8 6 12 12 Si 1.86795 * 120.00585 * 355.45167 * 10 8 6 13 13 H 1.48498 * 109.47177 * 275.31888 * 12 10 8 14 14 H 1.48502 * 109.47122 * 35.31819 * 12 10 8 15 15 H 1.48498 * 109.47619 * 155.31807 * 12 10 8 16 16 N 1.47690 * 108.14286 * 94.54797 * 6 5 4 17 17 C 1.46895 * 111.00181 * 152.02899 * 16 6 5 18 18 C 1.40085 * 114.56193 * 278.72440 * 16 6 5 19 19 C 1.54509 * 111.52019 * 61.44575 * 18 16 6 20 20 C 1.53006 * 109.55747 * 43.81329 * 19 18 16 21 21 C 1.52997 * 109.56348 * 164.03455 * 19 18 16 22 22 C 1.48064 * 111.00199 * 196.12455 * 4 3 2 23 23 H 1.08011 * 120.00213 * 359.97438 * 1 2 3 24 24 H 1.08003 * 120.00446 * 179.97438 * 1 2 3 25 25 H 1.07994 * 120.00022 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.46886 * 5.26047 * 3 2 1 27 27 H 1.08997 * 109.46790 * 245.25590 * 3 2 1 28 28 H 1.09001 * 109.00676 * 324.33556 * 5 4 3 29 29 H 1.08998 * 108.94389 * 205.60691 * 5 4 3 30 30 H 0.96998 * 120.00651 * 180.02562 * 11 10 8 31 31 H 1.08993 * 109.47475 * 54.59323 * 17 16 6 32 32 H 1.09003 * 109.47061 * 174.59583 * 17 16 6 33 33 H 1.09004 * 109.47046 * 294.59114 * 17 16 6 34 34 H 1.08997 * 109.06963 * 181.97570 * 18 16 6 35 35 H 1.09006 * 109.06903 * 300.91693 * 18 16 6 36 36 H 1.09006 * 109.46790 * 98.91577 * 20 19 18 37 37 H 1.08997 * 109.47260 * 218.91567 * 20 19 18 38 38 H 1.09001 * 109.47003 * 338.91943 * 20 19 18 39 39 H 1.08996 * 109.47141 * 59.99647 * 21 19 18 40 40 H 1.09004 * 109.47203 * 180.02562 * 21 19 18 41 41 H 1.09001 * 109.46718 * 300.00046 * 21 19 18 42 42 H 1.09002 * 108.78969 * 71.32959 * 22 4 3 43 43 H 1.09003 * 108.78990 * 313.11272 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0006 1.3295 1.1310 5 6 4.0914 0.3535 0.9343 6 6 5.2146 0.9231 0.1051 7 1 4.8337 1.7211 -0.5321 8 6 5.8199 -0.1630 -0.7466 9 1 6.1744 -1.0742 -0.2882 10 6 5.9207 0.0069 -2.1111 11 7 6.5290 -0.9005 -2.8435 12 14 5.1935 1.5256 -2.9197 13 1 3.7512 1.2993 -3.1911 14 1 5.3497 2.6917 -2.0136 15 1 5.9015 1.7933 -4.1974 16 7 6.2365 1.4636 1.0243 17 6 7.5709 1.4212 0.4117 18 6 5.9534 2.7417 1.5231 19 6 4.6454 2.7522 2.3455 20 6 4.6089 1.5302 3.2655 21 6 4.5792 4.0287 3.1864 22 6 3.4724 2.7070 1.3997 23 1 -0.5401 0.9354 0.0004 24 1 -0.5401 -0.9353 -0.0004 25 1 1.8499 -0.9353 -0.0004 26 1 1.3589 2.1314 0.0942 27 1 2.6176 1.4047 -0.9333 28 1 3.6925 -0.5285 0.4331 29 1 4.4831 0.0596 1.9080 30 1 6.6004 -0.7810 -3.8034 31 1 7.5466 1.9368 -0.5482 32 1 8.2884 1.9116 1.0696 33 1 7.8679 0.3835 0.2594 34 1 6.7768 3.0660 2.1594 35 1 5.8550 3.4359 0.6885 36 1 4.9209 1.8212 4.2686 37 1 3.5946 1.1327 3.3015 38 1 5.2852 0.7663 2.8818 39 1 4.6014 4.8981 2.5294 40 1 3.6562 4.0344 3.7662 41 1 5.4331 4.0626 3.8630 42 1 2.6521 3.2814 1.8300 43 1 3.7642 3.1685 0.4563 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221597757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:47 Heat of formation + Delta-G solvation = 57.398506 kcal Electronic energy + Delta-G solvation = -20835.531213 eV Core-core repulsion = 18110.405895 eV Total energy + Delta-G solvation = -2725.125318 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.92668 -35.96903 -34.91346 -32.83019 -32.14134 -29.31844 -27.37216 -26.46222 -26.23738 -24.96126 -23.14442 -21.97277 -19.76373 -18.60042 -18.16460 -17.28761 -15.69995 -15.18978 -15.03669 -14.80207 -14.24049 -13.91821 -13.82096 -13.07873 -12.90692 -12.81648 -12.23955 -12.21392 -11.97768 -11.74144 -11.44531 -11.36482 -11.30177 -11.07350 -10.86532 -10.55067 -10.47704 -10.31786 -10.24176 -9.94889 -9.81050 -9.32677 -9.22482 -9.07543 -8.71176 -7.64706 -7.00455 -6.21755 -4.19684 2.60850 3.13818 3.21698 3.24170 4.26535 4.51529 4.83300 5.06806 5.19776 5.21778 5.29537 5.53540 5.59275 5.80726 5.83814 5.90387 5.92470 6.01745 6.03100 6.14381 6.16947 6.21994 6.24967 6.33120 6.38446 6.43784 6.50867 6.62465 6.69123 6.76625 6.84264 6.94613 7.09485 7.12045 7.20838 7.34175 7.36093 7.67420 7.82167 8.19552 8.24447 8.71483 8.87717 9.42068 10.90849 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015412 B = 0.012091 C = 0.008169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.323676 B = 2315.265408 C = 3426.952860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.121 4.121 3 C 0.079 3.921 4 N -0.542 5.542 5 C 0.043 3.957 6 C 0.159 3.841 7 H 0.015 0.985 8 C -0.502 4.502 9 H 0.082 0.918 10 C 0.079 3.921 11 N -0.890 5.890 12 Si 0.866 3.134 13 H -0.273 1.273 14 H -0.272 1.272 15 H -0.288 1.288 16 N -0.557 5.557 17 C 0.061 3.939 18 C 0.083 3.917 19 C -0.064 4.064 20 C -0.144 4.144 21 C -0.131 4.131 22 C 0.072 3.928 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.113 0.887 26 H 0.065 0.935 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.265 0.735 31 H 0.012 0.988 32 H 0.032 0.968 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.001 0.999 36 H 0.031 0.969 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.138 6.852 8.199 12.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.139 4.139 3 C -0.049 4.049 4 N -0.266 5.266 5 C -0.083 4.083 6 C 0.053 3.947 7 H 0.032 0.968 8 C -0.541 4.541 9 H 0.100 0.900 10 C -0.125 4.125 11 N -0.527 5.527 12 Si 0.694 3.306 13 H -0.198 1.198 14 H -0.198 1.198 15 H -0.214 1.214 16 N -0.282 5.282 17 C -0.086 4.086 18 C -0.047 4.047 19 C -0.065 4.065 20 C -0.201 4.201 21 C -0.189 4.189 22 C -0.056 4.056 23 H 0.108 0.892 24 H 0.112 0.888 25 H 0.131 0.869 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.031 0.969 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.019 0.981 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.328 6.382 8.776 12.561 hybrid contribution 0.077 1.777 -2.180 2.813 sum -6.251 8.159 6.596 12.213 Atomic orbital electron populations 1.23642 0.95740 1.01133 1.04043 1.22952 0.95603 0.98699 0.96663 1.21154 0.95027 0.95399 0.93332 1.62288 1.18485 1.06775 1.39005 1.22809 0.89608 0.93894 1.02009 1.20041 0.89782 0.94798 0.90062 0.96751 1.20842 1.40093 1.02415 0.90752 0.90030 1.25024 0.94397 0.95672 0.97362 1.69874 1.41704 1.34881 1.06286 0.87066 0.80088 0.84520 0.78891 1.19837 1.19769 1.21378 1.59400 1.04208 1.22995 1.41574 1.21920 0.88722 1.02688 0.95298 1.21040 0.96306 0.91064 0.96329 1.20458 0.94217 0.96330 0.95478 1.22290 1.03536 0.97915 0.96343 1.21827 1.01494 0.96514 0.99094 1.21830 0.96512 0.89873 0.97384 0.89216 0.88787 0.86861 0.91643 0.94013 0.90959 0.88557 0.92493 0.96908 0.94906 0.90105 0.92477 0.98138 0.94981 0.91384 0.88864 0.93385 0.92622 0.92597 0.91953 0.95936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.87 14.32 29.02 0.42 -2.45 16 2 C -0.12 -1.97 9.20 -36.02 -0.33 -2.30 16 3 C 0.08 1.38 5.29 -4.97 -0.03 1.36 16 4 N -0.54 -9.79 3.65 -237.18 -0.87 -10.65 16 5 C 0.04 0.88 4.42 -4.51 -0.02 0.86 16 6 C 0.16 3.62 1.69 -69.54 -0.12 3.50 16 7 H 0.01 0.36 2.70 -51.93 -0.14 0.22 16 8 C -0.50 -13.25 6.41 -34.44 -0.22 -13.47 16 9 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 10 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 11 N -0.89 -26.05 13.96 55.43 0.77 -25.27 16 12 Si 0.87 21.43 27.02 -169.99 -4.59 16.84 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.27 -6.73 6.40 56.52 0.36 -6.37 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 N -0.56 -11.61 3.05 -241.36 -0.74 -12.35 16 17 C 0.06 1.29 8.65 60.06 0.52 1.81 16 18 C 0.08 1.53 3.96 -6.55 -0.03 1.50 16 19 C -0.06 -1.03 0.77 -154.85 -0.12 -1.15 16 20 C -0.14 -2.29 7.37 37.16 0.27 -2.02 16 21 C -0.13 -1.70 7.97 37.16 0.30 -1.40 16 22 C 0.07 1.22 4.18 -4.31 -0.02 1.20 16 23 H 0.09 1.13 7.84 -52.48 -0.41 0.72 16 24 H 0.09 1.15 8.06 -52.48 -0.42 0.73 16 25 H 0.11 1.92 6.88 -52.49 -0.36 1.56 16 26 H 0.07 1.03 7.65 -51.93 -0.40 0.63 16 27 H 0.04 0.85 7.37 -51.93 -0.38 0.47 16 28 H 0.07 1.55 5.81 -51.93 -0.30 1.25 16 29 H 0.10 1.92 4.19 -51.93 -0.22 1.70 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.01 0.28 8.12 -51.93 -0.42 -0.14 16 32 H 0.03 0.59 7.77 -51.93 -0.40 0.19 16 33 H 0.08 1.85 7.01 -51.93 -0.36 1.49 16 34 H 0.06 0.96 7.68 -51.93 -0.40 0.57 16 35 H 0.00 0.02 7.60 -51.93 -0.39 -0.38 16 36 H 0.03 0.45 7.72 -51.93 -0.40 0.05 16 37 H 0.07 1.11 6.59 -51.93 -0.34 0.77 16 38 H 0.09 1.68 4.63 -51.93 -0.24 1.44 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.66 8.10 -51.93 -0.42 0.24 16 41 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 42 H 0.06 0.95 7.70 -51.93 -0.40 0.55 16 43 H 0.02 0.43 6.41 -51.93 -0.33 0.10 16 LS Contribution 310.44 15.07 4.68 4.68 Total: -1.00 -27.59 310.44 -7.41 -35.00 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -7.20 Total: 2.24 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 0.53 Total: -10.48 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -0.83 Total: -48.27 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.59 Total: 16.84 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.59 -7.41 -35.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221597757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.394 kcal (2) G-P(sol) polarization free energy of solvation -27.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds