Wall clock time and date at job start Mon Mar 30 2020 04:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50709 * 119.99966 * 2 1 4 4 N 1.46898 * 109.46896 * 125.25627 * 3 2 1 5 5 C 1.47683 * 110.96099 * 68.52896 * 4 3 2 6 6 C 1.50782 * 111.94811 * 84.99301 * 5 4 3 7 7 H 1.08994 * 109.73846 * 334.86471 * 6 5 4 8 8 C 1.50708 * 109.73476 * 214.21695 * 6 5 4 9 9 H 1.07991 * 120.00325 * 305.77078 * 8 6 5 10 10 C 1.37878 * 119.99384 * 125.76510 * 8 6 5 11 11 N 1.31514 * 119.99630 * 175.45215 * 10 8 6 12 12 Si 1.86795 * 120.00585 * 355.45167 * 10 8 6 13 13 H 1.48498 * 109.47177 * 275.31888 * 12 10 8 14 14 H 1.48502 * 109.47122 * 35.31819 * 12 10 8 15 15 H 1.48498 * 109.47619 * 155.31807 * 12 10 8 16 16 N 1.47690 * 108.14286 * 94.54797 * 6 5 4 17 17 C 1.46895 * 111.00181 * 152.02899 * 16 6 5 18 18 C 1.40085 * 114.56193 * 278.72440 * 16 6 5 19 19 C 1.54509 * 111.52019 * 61.44575 * 18 16 6 20 20 C 1.53006 * 109.55747 * 43.81329 * 19 18 16 21 21 C 1.52997 * 109.56348 * 164.03455 * 19 18 16 22 22 C 1.48064 * 111.00199 * 196.12455 * 4 3 2 23 23 H 1.08011 * 120.00213 * 359.97438 * 1 2 3 24 24 H 1.08003 * 120.00446 * 179.97438 * 1 2 3 25 25 H 1.07994 * 120.00022 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.46886 * 5.26047 * 3 2 1 27 27 H 1.08997 * 109.46790 * 245.25590 * 3 2 1 28 28 H 1.09001 * 109.00676 * 324.33556 * 5 4 3 29 29 H 1.08998 * 108.94389 * 205.60691 * 5 4 3 30 30 H 0.96998 * 120.00651 * 180.02562 * 11 10 8 31 31 H 1.08993 * 109.47475 * 54.59323 * 17 16 6 32 32 H 1.09003 * 109.47061 * 174.59583 * 17 16 6 33 33 H 1.09004 * 109.47046 * 294.59114 * 17 16 6 34 34 H 1.08997 * 109.06963 * 181.97570 * 18 16 6 35 35 H 1.09006 * 109.06903 * 300.91693 * 18 16 6 36 36 H 1.09006 * 109.46790 * 98.91577 * 20 19 18 37 37 H 1.08997 * 109.47260 * 218.91567 * 20 19 18 38 38 H 1.09001 * 109.47003 * 338.91943 * 20 19 18 39 39 H 1.08996 * 109.47141 * 59.99647 * 21 19 18 40 40 H 1.09004 * 109.47203 * 180.02562 * 21 19 18 41 41 H 1.09001 * 109.46718 * 300.00046 * 21 19 18 42 42 H 1.09002 * 108.78969 * 71.32959 * 22 4 3 43 43 H 1.09003 * 108.78990 * 313.11272 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0006 1.3295 1.1310 5 6 4.0914 0.3535 0.9343 6 6 5.2146 0.9231 0.1051 7 1 4.8337 1.7211 -0.5321 8 6 5.8199 -0.1630 -0.7466 9 1 6.1744 -1.0742 -0.2882 10 6 5.9207 0.0069 -2.1111 11 7 6.5290 -0.9005 -2.8435 12 14 5.1935 1.5256 -2.9197 13 1 3.7512 1.2993 -3.1911 14 1 5.3497 2.6917 -2.0136 15 1 5.9015 1.7933 -4.1974 16 7 6.2365 1.4636 1.0243 17 6 7.5709 1.4212 0.4117 18 6 5.9534 2.7417 1.5231 19 6 4.6454 2.7522 2.3455 20 6 4.6089 1.5302 3.2655 21 6 4.5792 4.0287 3.1864 22 6 3.4724 2.7070 1.3997 23 1 -0.5401 0.9354 0.0004 24 1 -0.5401 -0.9353 -0.0004 25 1 1.8499 -0.9353 -0.0004 26 1 1.3589 2.1314 0.0942 27 1 2.6176 1.4047 -0.9333 28 1 3.6925 -0.5285 0.4331 29 1 4.4831 0.0596 1.9080 30 1 6.6004 -0.7810 -3.8034 31 1 7.5466 1.9368 -0.5482 32 1 8.2884 1.9116 1.0696 33 1 7.8679 0.3835 0.2594 34 1 6.7768 3.0660 2.1594 35 1 5.8550 3.4359 0.6885 36 1 4.9209 1.8212 4.2686 37 1 3.5946 1.1327 3.3015 38 1 5.2852 0.7663 2.8818 39 1 4.6014 4.8981 2.5294 40 1 3.6562 4.0344 3.7662 41 1 5.4331 4.0626 3.8630 42 1 2.6521 3.2814 1.8300 43 1 3.7642 3.1685 0.4563 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221597757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:47 Heat of formation + Delta-G solvation = 40.178096 kcal Electronic energy + Delta-G solvation = -20836.277946 eV Core-core repulsion = 18110.405895 eV Total energy + Delta-G solvation = -2725.872051 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.44721 -37.44727 -36.43787 -34.54891 -33.79690 -30.98341 -28.83912 -27.96079 -27.58287 -26.54339 -24.85792 -23.47733 -21.26504 -20.09437 -19.55012 -19.33124 -17.21587 -16.66846 -16.63943 -16.43371 -15.99817 -15.41392 -15.23874 -14.89381 -14.43342 -14.12566 -13.95220 -13.66992 -13.33432 -13.16844 -13.02904 -12.97768 -12.74979 -12.55288 -12.41438 -12.15295 -12.06931 -11.95422 -11.74209 -11.59738 -11.26191 -11.15694 -10.83881 -10.79484 -10.30116 -9.22613 -8.70235 -8.39651 -6.38640 1.12839 1.16235 1.21470 1.41717 2.16856 2.86838 3.12722 3.44737 3.74021 3.92807 3.97117 4.24231 4.27931 4.44331 4.49526 4.51923 4.60065 4.66652 4.67471 4.70085 4.74792 4.79512 4.85199 4.90486 5.04599 5.07321 5.10483 5.18226 5.28755 5.36595 5.38012 5.39394 5.49059 5.63041 5.77174 5.84154 5.89464 6.08488 6.21615 6.31497 6.41295 6.67326 6.96392 7.25134 8.76720 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015412 B = 0.012091 C = 0.008169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.323676 B = 2315.265408 C = 3426.952860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.158 4.158 3 C 0.081 3.919 4 N -0.533 5.533 5 C 0.054 3.946 6 C 0.167 3.833 7 H 0.001 0.999 8 C -0.492 4.492 9 H 0.045 0.955 10 C 0.033 3.967 11 N -0.933 5.933 12 Si 0.920 3.080 13 H -0.265 1.265 14 H -0.272 1.272 15 H -0.285 1.285 16 N -0.555 5.555 17 C 0.066 3.934 18 C 0.078 3.922 19 C -0.062 4.062 20 C -0.136 4.136 21 C -0.124 4.124 22 C 0.068 3.932 23 H 0.109 0.891 24 H 0.112 0.888 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.007 0.993 28 H 0.052 0.948 29 H 0.103 0.897 30 H 0.266 0.734 31 H -0.010 1.010 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.079 0.921 35 H -0.016 1.016 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.090 0.910 43 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.942 9.005 10.150 15.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.176 4.176 3 C -0.047 4.047 4 N -0.256 5.256 5 C -0.073 4.073 6 C 0.060 3.940 7 H 0.018 0.982 8 C -0.531 4.531 9 H 0.063 0.937 10 C -0.167 4.167 11 N -0.573 5.573 12 Si 0.747 3.253 13 H -0.191 1.191 14 H -0.198 1.198 15 H -0.211 1.211 16 N -0.279 5.279 17 C -0.081 4.081 18 C -0.052 4.052 19 C -0.063 4.063 20 C -0.193 4.193 21 C -0.182 4.182 22 C -0.059 4.059 23 H 0.127 0.873 24 H 0.131 0.869 25 H 0.113 0.887 26 H 0.107 0.893 27 H 0.025 0.975 28 H 0.071 0.929 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.009 0.991 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.002 0.998 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -8.144 8.549 10.745 15.964 hybrid contribution 0.615 1.071 -2.715 2.983 sum -7.529 9.620 8.029 14.618 Atomic orbital electron populations 1.23916 0.94668 1.02920 0.99609 1.22807 0.96592 0.97449 1.00767 1.21192 0.94993 0.97079 0.91431 1.62365 1.17260 1.07034 1.38969 1.22556 0.89425 0.93888 1.01422 1.19899 0.90703 0.93216 0.90215 0.98175 1.20951 1.38928 1.02089 0.91156 0.93677 1.25607 0.95006 0.98046 0.98010 1.69990 1.43853 1.36893 1.06572 0.86200 0.79686 0.81513 0.77931 1.19061 1.19774 1.21083 1.59357 1.03386 1.24780 1.40390 1.21851 0.89972 1.01064 0.95239 1.21216 0.98734 0.88899 0.96326 1.20529 0.92162 0.98337 0.95279 1.22145 1.02726 0.97076 0.97349 1.21779 1.03046 0.94484 0.98901 1.22002 0.98032 0.89069 0.96773 0.87301 0.86943 0.88666 0.89265 0.97493 0.92937 0.87951 0.92466 0.99126 0.91263 0.92820 0.90243 0.99824 0.92694 0.91675 0.91316 0.92889 0.90898 0.91279 0.89216 0.98258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.29 14.32 67.79 0.97 -3.32 16 2 C -0.16 -5.00 9.20 25.65 0.24 -4.76 16 3 C 0.08 2.77 5.29 85.56 0.45 3.22 16 4 N -0.53 -18.68 3.65 -904.31 -3.30 -21.98 16 5 C 0.05 2.24 4.42 85.43 0.38 2.62 16 6 C 0.17 7.74 1.69 43.30 0.07 7.81 16 7 H 0.00 0.03 2.70 -2.39 -0.01 0.03 16 8 C -0.49 -27.22 6.41 25.60 0.16 -27.05 16 9 H 0.04 2.78 8.06 -2.92 -0.02 2.76 16 10 C 0.03 1.87 5.47 84.66 0.46 2.33 16 11 N -0.93 -56.92 13.96 21.45 0.30 -56.62 16 12 Si 0.92 45.60 27.02 68.60 1.85 47.45 16 13 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 14 H -0.27 -13.38 6.40 99.48 0.64 -12.74 16 15 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 16 N -0.56 -23.06 3.05 -917.52 -2.79 -25.85 16 17 C 0.07 2.84 8.65 127.69 1.10 3.94 16 18 C 0.08 2.73 3.96 88.05 0.35 3.08 16 19 C -0.06 -1.82 0.77 -52.40 -0.04 -1.86 16 20 C -0.14 -3.97 7.37 71.98 0.53 -3.44 16 21 C -0.12 -2.67 7.97 71.98 0.57 -2.09 16 22 C 0.07 2.19 4.18 85.35 0.36 2.54 16 23 H 0.11 2.30 7.84 -2.91 -0.02 2.28 16 24 H 0.11 2.37 8.06 -2.91 -0.02 2.35 16 25 H 0.10 3.32 6.88 -2.91 -0.02 3.30 16 26 H 0.09 2.59 7.65 -2.39 -0.02 2.57 16 27 H 0.01 0.29 7.37 -2.39 -0.02 0.27 16 28 H 0.05 2.35 5.81 -2.39 -0.01 2.34 16 29 H 0.10 4.10 4.19 -2.39 -0.01 4.09 16 30 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 31 H -0.01 -0.47 8.12 -2.39 -0.02 -0.49 16 32 H 0.07 2.41 7.77 -2.39 -0.02 2.40 16 33 H 0.05 2.55 7.01 -2.38 -0.02 2.53 16 34 H 0.08 2.44 7.68 -2.39 -0.02 2.42 16 35 H -0.02 -0.63 7.60 -2.38 -0.02 -0.65 16 36 H 0.05 1.35 7.72 -2.38 -0.02 1.33 16 37 H 0.06 1.95 6.59 -2.39 -0.02 1.93 16 38 H 0.07 2.38 4.63 -2.39 -0.01 2.36 16 39 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.35 8.10 -2.38 -0.02 1.33 16 41 H 0.07 1.33 8.13 -2.39 -0.02 1.31 16 42 H 0.09 2.40 7.70 -2.39 -0.02 2.38 16 43 H 0.00 -0.03 6.41 -2.39 -0.02 -0.05 16 Total: -1.00 -62.05 310.44 2.57 -59.48 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.90 Total: 14.51 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 5.61 Total: -16.99 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -5.80 Total: -104.46 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.85 Total: 47.45 kcal Total: -62.05 2.57 -59.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221597757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.659 kcal (2) G-P(sol) polarization free energy of solvation -62.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds