Wall clock time and date at job start Mon Mar 30 2020 04:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50710 * 119.99849 * 2 1 4 4 N 1.46903 * 109.46536 * 124.99911 * 3 2 1 5 5 C 1.47902 * 111.00471 * 317.97229 * 4 3 2 6 6 C 1.50796 * 108.49971 * 153.78162 * 5 4 3 7 7 C 1.52997 * 108.95980 * 213.22822 * 6 5 4 8 8 C 1.53004 * 108.95456 * 331.87736 * 6 5 4 9 9 C 1.53699 * 112.09895 * 92.55135 * 6 5 4 10 10 N 1.48185 * 112.55690 * 318.48361 * 9 6 5 11 11 C 1.46889 * 111.19747 * 192.28203 * 10 9 6 12 12 C 1.44581 * 113.78795 * 318.51376 * 10 9 6 13 13 C 1.40018 * 110.99422 * 190.00157 * 4 3 2 14 14 H 1.08998 * 108.89223 * 67.47288 * 13 4 3 15 15 C 1.50709 * 108.95963 * 308.76815 * 13 4 3 16 16 H 1.08005 * 119.99651 * 357.43398 * 15 13 4 17 17 C 1.37875 * 119.99808 * 177.43506 * 15 13 4 18 18 N 1.31516 * 119.99637 * 179.97438 * 17 15 13 19 19 Si 1.86794 * 120.00179 * 359.97438 * 17 15 13 20 20 H 1.48503 * 109.46989 * 90.00435 * 19 17 15 21 21 H 1.48499 * 109.47240 * 209.99796 * 19 17 15 22 22 H 1.48500 * 109.47194 * 330.00277 * 19 17 15 23 23 H 1.08001 * 120.00073 * 0.02562 * 1 2 3 24 24 H 1.08002 * 119.99989 * 179.97438 * 1 2 3 25 25 H 1.08000 * 120.00597 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47027 * 4.99919 * 3 2 1 27 27 H 1.08995 * 109.46906 * 244.99924 * 3 2 1 28 28 H 1.09004 * 109.63169 * 273.48719 * 5 4 3 29 29 H 1.09000 * 109.63221 * 33.87989 * 5 4 3 30 30 H 1.09002 * 109.47312 * 59.99290 * 7 6 5 31 31 H 1.09001 * 109.47588 * 179.97438 * 7 6 5 32 32 H 1.09002 * 109.46930 * 300.00462 * 7 6 5 33 33 H 1.09002 * 109.46794 * 37.38819 * 8 6 5 34 34 H 1.09000 * 109.47240 * 157.38454 * 8 6 5 35 35 H 1.08998 * 109.47185 * 277.38730 * 8 6 5 36 36 H 1.08993 * 108.88185 * 79.32878 * 9 6 5 37 37 H 1.09000 * 108.88078 * 197.88550 * 9 6 5 38 38 H 1.09002 * 109.47647 * 183.79961 * 11 10 9 39 39 H 1.09004 * 109.47627 * 303.79879 * 11 10 9 40 40 H 1.09006 * 109.47297 * 63.79929 * 11 10 9 41 41 H 1.08995 * 109.57179 * 334.20295 * 12 10 9 42 42 H 1.08998 * 109.57079 * 213.95704 * 12 10 9 43 43 H 0.97004 * 119.99896 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9962 1.3320 1.1346 5 6 2.3633 0.7847 2.3542 6 6 3.4455 0.2370 3.2502 7 6 2.8988 -0.9761 4.0055 8 6 4.6271 -0.2092 2.3867 9 6 3.9361 1.2791 4.2678 10 7 4.0867 2.6278 3.6726 11 6 4.8227 3.5262 4.5720 12 6 4.6754 2.6201 2.3522 13 6 3.5474 2.6083 1.3008 14 1 2.7612 3.2938 1.6171 15 6 4.1035 3.0772 -0.0191 16 1 4.0692 2.4273 -0.8810 17 6 4.6560 4.3359 -0.1262 18 7 5.1417 4.7449 -1.2780 19 14 4.7147 5.4602 1.3643 20 1 5.9836 5.2373 2.1028 21 1 4.6427 6.8753 0.9201 22 1 3.5645 5.1617 2.2550 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8500 -0.9352 -0.0004 26 1 1.3585 2.1317 0.0896 27 1 2.6212 1.4027 -0.9313 28 1 1.8237 1.5767 2.8736 29 1 1.6713 -0.0121 2.0817 30 1 2.5905 -1.7399 3.2916 31 1 3.6750 -1.3793 4.6559 32 1 2.0414 -0.6736 4.6067 33 1 4.7543 0.4867 1.5575 34 1 5.5340 -0.2235 2.9913 35 1 4.4349 -1.2085 1.9963 36 1 3.2219 1.3335 5.0893 37 1 4.9017 0.9609 4.6610 38 1 4.8586 4.5254 4.1381 39 1 4.3182 3.5673 5.5374 40 1 5.8377 3.1525 4.7081 41 1 5.2945 1.7309 2.2336 42 1 5.2882 3.5118 2.2204 43 1 5.5301 5.6306 -1.3535 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221598024.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:24 Heat of formation + Delta-G solvation = 68.610303 kcal Electronic energy + Delta-G solvation = -20881.495477 eV Core-core repulsion = 18156.856339 eV Total energy + Delta-G solvation = -2724.639138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.84491 -36.21203 -34.83397 -33.31328 -31.96483 -28.94795 -27.16322 -26.58724 -26.42710 -24.92277 -23.66373 -21.52362 -19.48664 -19.28031 -18.04714 -17.02221 -15.98654 -15.23300 -14.83813 -14.47682 -14.13867 -14.03977 -13.53144 -13.25002 -13.09493 -12.82761 -12.50856 -12.16168 -12.07589 -11.84488 -11.67802 -11.45560 -11.27341 -10.97539 -10.87852 -10.56276 -10.38210 -10.29085 -10.11512 -9.98915 -9.70419 -9.32727 -9.26183 -8.73643 -8.55971 -7.55190 -7.01327 -6.07208 -4.06840 2.64592 3.23678 3.39068 3.48743 4.40536 4.44829 4.85530 5.10010 5.22910 5.32857 5.43149 5.48218 5.61171 5.68172 5.74327 5.83065 5.89259 5.98786 6.05470 6.12018 6.12712 6.16086 6.22128 6.23858 6.30478 6.43125 6.46379 6.50432 6.65207 6.68825 6.71850 6.84666 7.03203 7.12286 7.31325 7.34943 7.55070 7.66429 7.86875 8.12416 8.31981 8.79411 9.00100 9.56075 11.04054 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017641 B = 0.011350 C = 0.007826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.874954 B = 2466.422792 C = 3577.021924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.129 4.129 3 C 0.096 3.904 4 N -0.526 5.526 5 C 0.071 3.929 6 C -0.062 4.062 7 C -0.135 4.135 8 C -0.154 4.154 9 C 0.077 3.923 10 N -0.559 5.559 11 C 0.030 3.970 12 C 0.040 3.960 13 C 0.205 3.795 14 H -0.003 1.003 15 C -0.512 4.512 16 H 0.085 0.915 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.873 3.127 20 H -0.282 1.282 21 H -0.299 1.299 22 H -0.251 1.251 23 H 0.092 0.908 24 H 0.090 0.910 25 H 0.107 0.893 26 H 0.032 0.968 27 H 0.095 0.905 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.117 0.883 34 H 0.029 0.971 35 H 0.042 0.958 36 H 0.060 0.940 37 H 0.025 0.975 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.018 0.982 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.439 -8.640 9.432 13.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.147 4.147 3 C -0.031 4.031 4 N -0.249 5.249 5 C -0.057 4.057 6 C -0.063 4.063 7 C -0.193 4.193 8 C -0.211 4.211 9 C -0.051 4.051 10 N -0.283 5.283 11 C -0.119 4.119 12 C -0.087 4.087 13 C 0.095 3.905 14 H 0.015 0.985 15 C -0.550 4.550 16 H 0.103 0.897 17 C -0.131 4.131 18 N -0.535 5.535 19 Si 0.703 3.297 20 H -0.209 1.209 21 H -0.227 1.227 22 H -0.175 1.175 23 H 0.110 0.890 24 H 0.108 0.892 25 H 0.125 0.875 26 H 0.050 0.950 27 H 0.113 0.887 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.135 0.865 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.037 0.963 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.416 -8.571 9.178 13.312 hybrid contribution 0.426 0.997 1.181 1.603 sum -3.990 -7.574 10.359 13.438 Atomic orbital electron populations 1.23723 0.96018 1.01138 1.04645 1.23160 0.95613 0.99605 0.96366 1.21161 0.93366 0.92113 0.96444 1.59182 1.33595 1.28414 1.03693 1.21826 0.94519 0.98479 0.90860 1.20330 0.97075 0.93977 0.94905 1.21901 1.00188 0.97325 0.99877 1.22425 0.94783 1.02130 1.01770 1.22471 0.98597 0.87971 0.96038 1.60868 1.54108 1.09859 1.03478 1.22357 0.95444 0.97246 0.96826 1.22961 0.98017 1.01396 0.86364 1.18531 0.92292 0.85395 0.94276 0.98527 1.21205 1.38999 1.00084 0.94757 0.89708 1.24969 0.94784 0.97709 0.95602 1.69887 1.40023 1.19388 1.24244 0.87110 0.79292 0.79380 0.83906 1.20898 1.22697 1.17456 0.88967 0.89195 0.87529 0.94969 0.88715 0.94398 0.91173 0.92557 0.93187 0.93156 0.86525 0.95149 0.93935 0.92116 0.95641 0.92070 0.92253 0.96317 0.91591 0.92139 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.00 14.28 29.02 0.41 -2.59 16 2 C -0.13 -2.00 7.19 -36.02 -0.26 -2.26 16 3 C 0.10 1.85 5.02 -4.97 -0.02 1.82 16 4 N -0.53 -10.58 2.28 -234.32 -0.53 -11.12 16 5 C 0.07 1.23 4.42 -4.38 -0.02 1.21 16 6 C -0.06 -0.97 0.72 -155.25 -0.11 -1.08 16 7 C -0.13 -1.69 7.94 37.16 0.30 -1.39 16 8 C -0.15 -2.56 7.08 37.16 0.26 -2.30 16 9 C 0.08 1.24 4.50 -2.75 -0.01 1.23 16 10 N -0.56 -10.79 4.20 -242.49 -1.02 -11.81 16 11 C 0.03 0.51 9.33 60.06 0.56 1.07 16 12 C 0.04 0.87 3.88 -4.44 -0.02 0.86 16 13 C 0.21 4.80 0.99 -71.79 -0.07 4.73 16 14 H 0.00 -0.07 7.01 -51.93 -0.36 -0.43 16 15 C -0.51 -13.86 8.37 -34.44 -0.29 -14.15 16 16 H 0.09 2.46 6.32 -52.48 -0.33 2.13 16 17 C 0.07 2.02 5.43 -17.82 -0.10 1.92 16 18 N -0.90 -26.96 13.96 55.43 0.77 -26.19 16 19 Si 0.87 21.79 22.80 -169.99 -3.87 17.91 16 20 H -0.28 -6.82 6.75 56.52 0.38 -6.44 16 21 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 22 H -0.25 -6.17 6.49 56.52 0.37 -5.80 16 23 H 0.09 1.29 7.84 -52.49 -0.41 0.88 16 24 H 0.09 1.06 8.06 -52.49 -0.42 0.63 16 25 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 26 H 0.03 0.66 7.71 -51.93 -0.40 0.26 16 27 H 0.09 2.02 6.27 -51.93 -0.33 1.69 16 28 H 0.04 0.72 7.57 -51.93 -0.39 0.33 16 29 H 0.07 1.12 5.29 -51.93 -0.27 0.84 16 30 H 0.06 0.67 8.02 -51.93 -0.42 0.26 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.12 2.32 4.02 -51.93 -0.21 2.12 16 34 H 0.03 0.48 7.50 -51.93 -0.39 0.09 16 35 H 0.04 0.65 7.85 -51.93 -0.41 0.24 16 36 H 0.06 0.91 7.97 -51.93 -0.41 0.49 16 37 H 0.03 0.40 7.50 -51.93 -0.39 0.01 16 38 H 0.06 1.13 6.27 -51.93 -0.33 0.81 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 1.42 4.30 -51.93 -0.22 1.20 16 42 H 0.06 1.44 2.98 -51.93 -0.15 1.29 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 304.17 15.07 4.58 4.58 Total: -1.00 -28.60 304.17 -6.60 -35.19 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -7.16 Total: 2.37 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 0.63 Total: -10.94 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.78 Total: -49.12 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -3.87 Total: 17.91 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.60 -6.60 -35.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221598024.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.803 kcal (2) G-P(sol) polarization free energy of solvation -28.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds