Wall clock time and date at job start Mon Mar 30 2020 04:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47113 * 2 1 4 4 H 1.08999 * 109.46688 * 305.00397 * 3 2 1 5 5 C 1.50693 * 109.46964 * 185.00008 * 3 2 1 6 6 H 1.08000 * 120.00184 * 239.99813 * 5 3 2 7 7 C 1.37880 * 119.99978 * 60.00604 * 5 3 2 8 8 N 1.31506 * 120.00185 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99902 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47068 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47081 * 119.99496 * 9 7 5 12 12 H 1.48496 * 109.47441 * 239.99913 * 9 7 5 13 13 N 1.46897 * 109.46888 * 65.00175 * 3 2 1 14 14 C 1.48520 * 111.00212 * 64.75607 * 13 3 2 15 15 C 1.54288 * 104.71445 * 159.27431 * 14 13 3 16 16 H 1.08997 * 112.37949 * 212.92483 * 15 14 13 17 17 C 1.54285 * 108.81639 * 87.79923 * 15 14 13 18 18 N 1.48513 * 104.71700 * 224.26881 * 17 15 14 19 19 C 1.48521 * 104.20285 * 39.73211 * 18 17 15 20 20 C 1.54288 * 104.71283 * 320.27216 * 19 18 17 21 21 H 1.09004 * 112.83363 * 261.17760 * 20 19 18 22 22 C 1.48509 * 111.00312 * 180.15714 * 13 3 2 23 23 H 1.09005 * 110.38814 * 319.64735 * 22 13 3 24 24 C 1.53002 * 110.38970 * 81.91063 * 22 13 3 25 25 C 1.53004 * 109.47240 * 179.40776 * 24 22 13 26 26 H 1.09003 * 109.47314 * 59.99753 * 1 2 3 27 27 H 1.09003 * 109.47245 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47052 * 299.99763 * 1 2 3 29 29 H 1.09003 * 109.47052 * 240.00237 * 2 1 3 30 30 H 1.08994 * 109.47435 * 120.00452 * 2 1 3 31 31 H 0.97005 * 120.00154 * 180.02562 * 8 7 5 32 32 H 1.08996 * 110.38544 * 40.46737 * 14 13 3 33 33 H 1.08999 * 110.38862 * 278.08580 * 14 13 3 34 34 H 1.09000 * 110.38668 * 105.46193 * 17 15 14 35 35 H 1.08997 * 110.48751 * 343.12967 * 17 15 14 36 36 H 1.00898 * 111.00311 * 159.27849 * 18 17 15 37 37 H 1.08996 * 110.38637 * 79.08242 * 19 18 17 38 38 H 1.08998 * 110.38865 * 201.46528 * 19 18 17 39 39 H 1.08997 * 109.47082 * 299.40792 * 24 22 13 40 40 H 1.09004 * 109.47143 * 59.41224 * 24 22 13 41 41 H 1.08998 * 109.46937 * 64.92709 * 25 24 22 42 42 H 1.08996 * 109.47441 * 184.92716 * 25 24 22 43 43 H 1.08999 * 109.46889 * 304.93192 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6052 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1431 0.8785 -1.2281 8 7 3.4061 0.3368 -2.1729 9 14 6.0048 0.8813 -1.3819 10 1 6.5986 1.5462 -0.1942 11 1 6.4969 -0.5174 -1.4631 12 1 6.3990 1.6169 -2.6102 13 7 1.6513 2.0993 1.2552 14 6 2.3178 1.4605 2.4187 15 6 2.2637 2.5248 3.5343 16 1 3.1317 2.4810 4.1921 17 6 0.9351 2.3722 4.3037 18 7 0.4338 3.7603 4.4699 19 6 0.7444 4.4174 3.1747 20 6 2.1374 3.8794 2.7865 21 1 2.9424 4.5706 3.0361 22 6 2.1271 3.5057 1.2897 23 1 3.1313 3.5772 0.8717 24 6 1.1649 4.4129 0.5203 25 6 1.6665 5.8571 0.5816 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8292 -0.0616 -2.9496 32 1 3.3521 1.2162 2.1767 33 1 1.7760 0.5646 2.7219 34 1 1.1103 1.9128 5.2765 35 1 0.2260 1.7789 3.7265 36 1 -0.5590 3.7671 4.6498 37 1 0.0068 4.1401 2.4217 38 1 0.7759 5.5002 3.2961 39 1 1.1139 4.0898 -0.5195 40 1 0.1729 4.3535 0.9683 41 1 2.6186 5.9335 0.0566 42 1 0.9373 6.5153 0.1093 43 1 1.8009 6.1511 1.6225 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227515263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:34 Heat of formation + Delta-G solvation = 6.690195 kcal Electronic energy + Delta-G solvation = -20658.751412 eV Core-core repulsion = 17931.427217 eV Total energy + Delta-G solvation = -2727.324195 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.95383 -36.11959 -33.96529 -32.65551 -31.40793 -29.23034 -28.51788 -26.15084 -25.34209 -23.35788 -22.37913 -21.76536 -20.25667 -18.80849 -18.18174 -16.41232 -16.10365 -15.76940 -14.62394 -14.28439 -13.98123 -13.63795 -13.27945 -12.87096 -12.78195 -12.63763 -12.11268 -11.92756 -11.84491 -11.57968 -11.32341 -11.23928 -10.93252 -10.72848 -10.67511 -10.53495 -10.30306 -10.17409 -10.00147 -9.83611 -9.77874 -9.66988 -9.41920 -9.06213 -8.36876 -8.23861 -7.21875 -6.01101 -4.13404 3.23662 3.32816 3.35616 4.37586 4.58743 4.93291 5.01447 5.16656 5.23962 5.44438 5.54650 5.61687 5.75097 5.82476 5.87764 5.99171 6.02332 6.09856 6.17235 6.32052 6.39731 6.41180 6.44834 6.47237 6.50679 6.56254 6.60920 6.67188 6.81080 6.89642 6.98260 7.05582 7.07227 7.16381 7.32052 7.54190 7.59310 7.72784 7.97109 8.13825 8.23125 8.42760 8.97017 9.53398 10.98435 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021321 B = 0.008098 C = 0.007523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.935566 B = 3456.625079 C = 3721.109891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C 0.205 3.795 4 H 0.039 0.961 5 C -0.541 4.541 6 H 0.059 0.941 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.884 3.116 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.503 5.503 14 C 0.041 3.959 15 C -0.097 4.097 16 H 0.077 0.923 17 C 0.048 3.952 18 N -0.674 5.674 19 C 0.040 3.960 20 C -0.087 4.087 21 H 0.076 0.924 22 C 0.070 3.930 23 H 0.066 0.934 24 C -0.112 4.112 25 C -0.150 4.150 26 H 0.038 0.962 27 H 0.024 0.976 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.030 0.970 31 H 0.260 0.740 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.328 0.672 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.829 5.513 8.036 10.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.148 4.148 3 C 0.098 3.902 4 H 0.057 0.943 5 C -0.580 4.580 6 H 0.077 0.923 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.713 3.287 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.227 5.227 14 C -0.087 4.087 15 C -0.117 4.117 16 H 0.095 0.905 17 C -0.081 4.081 18 N -0.301 5.301 19 C -0.088 4.088 20 C -0.106 4.106 21 H 0.094 0.906 22 C -0.039 4.039 23 H 0.084 0.916 24 C -0.150 4.150 25 C -0.207 4.207 26 H 0.057 0.943 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.110 0.890 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.141 0.859 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.849 5.643 8.280 11.132 hybrid contribution 1.385 -0.508 -0.947 1.753 sum -3.464 5.135 7.333 9.599 Atomic orbital electron populations 1.21701 0.98969 0.98338 1.00431 1.21562 0.92121 0.99242 1.01892 1.19367 0.93084 0.91170 0.86603 0.94292 1.21735 0.92852 1.37965 1.05398 0.92344 1.24900 0.97694 0.95073 0.95727 1.69881 1.34648 1.38294 1.09422 0.86660 0.86368 0.77719 0.77993 1.19924 1.21039 1.21050 1.65622 1.52213 1.00632 1.04201 1.23001 0.99468 0.95750 0.90527 1.22661 0.96820 0.95651 0.96546 0.90501 1.22911 0.96233 0.90058 0.98916 1.63732 1.19910 1.13912 1.32566 1.23197 0.97268 0.98233 0.90134 1.22571 0.96355 0.96057 0.95661 0.90598 1.22513 0.98299 0.90572 0.92557 0.91588 1.21564 0.99035 0.93569 1.00789 1.21802 1.00888 0.96776 1.01273 0.94269 0.95669 0.93580 0.89047 0.95110 0.92981 0.92174 0.91717 0.91524 0.93286 0.85852 0.91957 0.91437 0.91898 0.91556 0.92985 0.93473 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.80 37.15 0.36 -2.40 16 2 C -0.11 -2.55 5.18 -26.73 -0.14 -2.69 16 3 C 0.20 4.85 1.75 -68.87 -0.12 4.73 16 4 H 0.04 1.04 7.36 -51.93 -0.38 0.66 16 5 C -0.54 -13.95 6.51 -34.44 -0.22 -14.18 16 6 H 0.06 1.53 5.67 -52.49 -0.30 1.23 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.44 11.29 55.43 0.63 -23.82 16 9 Si 0.88 20.85 29.54 -169.99 -5.02 15.83 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.50 -10.07 4.53 -215.81 -0.98 -11.05 16 14 C 0.04 0.78 4.56 -2.25 -0.01 0.77 16 15 C -0.10 -1.58 4.12 -88.08 -0.36 -1.94 16 16 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 17 C 0.05 0.70 6.90 -2.26 -0.02 0.68 16 18 N -0.67 -9.33 7.62 -109.84 -0.84 -10.17 16 19 C 0.04 0.58 5.55 -2.25 -0.01 0.56 16 20 C -0.09 -1.40 3.21 -88.09 -0.28 -1.68 16 21 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 22 C 0.07 1.29 1.94 -66.15 -0.13 1.16 16 23 H 0.07 1.42 6.25 -51.93 -0.32 1.09 16 24 C -0.11 -1.87 5.17 -26.73 -0.14 -2.00 16 25 C -0.15 -2.10 9.65 37.16 0.36 -1.74 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.89 7.75 -51.93 -0.40 0.49 16 29 H 0.09 2.40 5.95 -51.93 -0.31 2.09 16 30 H 0.03 0.70 6.83 -51.93 -0.35 0.35 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.06 1.29 5.87 -51.93 -0.30 0.98 16 33 H 0.06 1.21 7.16 -51.93 -0.37 0.84 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.76 7.59 -51.93 -0.39 0.36 16 36 H 0.33 3.94 8.92 -39.29 -0.35 3.59 16 37 H 0.06 0.94 5.22 -51.93 -0.27 0.67 16 38 H 0.07 0.90 7.32 -51.93 -0.38 0.52 16 39 H 0.06 1.18 7.40 -51.93 -0.38 0.80 16 40 H 0.07 1.06 5.43 -51.93 -0.28 0.78 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.69 6.01 -51.93 -0.31 0.37 16 LS Contribution 309.98 15.07 4.67 4.67 Total: -1.00 -26.31 309.98 -9.56 -35.87 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.22 Total: 5.65 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -0.81 Total: -16.99 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: -1.19 Total: -45.03 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.31 -9.56 -35.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227515263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.565 kcal (2) G-P(sol) polarization free energy of solvation -26.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds