Wall clock time and date at job start Mon Mar 30 2020 04:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46975 * 2 1 4 4 H 1.08996 * 109.47375 * 304.10407 * 3 2 1 5 5 C 1.50693 * 109.47294 * 184.09857 * 3 2 1 6 6 H 1.08002 * 120.00695 * 240.00235 * 5 3 2 7 7 C 1.37885 * 119.99870 * 60.00221 * 5 3 2 8 8 N 1.31510 * 119.99681 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00061 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47378 * 89.99882 * 9 7 5 11 11 H 1.48498 * 109.47125 * 210.00292 * 9 7 5 12 12 H 1.48504 * 109.47106 * 330.00170 * 9 7 5 13 13 N 1.46907 * 109.46840 * 64.10287 * 3 2 1 14 14 C 1.46898 * 110.99757 * 206.86248 * 13 3 2 15 15 H 1.09000 * 110.63119 * 30.36740 * 14 13 3 16 16 C 1.55143 * 110.70579 * 153.47372 * 14 13 3 17 17 C 1.54905 * 101.65093 * 154.20850 * 16 14 13 18 18 H 1.09009 * 110.46763 * 81.81047 * 17 16 14 19 19 C 1.53006 * 110.37276 * 204.09697 * 17 16 14 20 20 N 1.47843 * 104.79866 * 322.92948 * 17 16 14 21 21 C 1.46901 * 110.99811 * 146.36587 * 20 17 16 22 22 C 1.52999 * 117.52032 * 111.28478 * 21 20 17 23 23 C 1.53001 * 117.49790 * 179.91519 * 21 20 17 24 24 C 1.47445 * 108.56641 * 24.09680 * 20 17 16 25 25 H 1.08997 * 109.47161 * 294.88748 * 1 2 3 26 26 H 1.08991 * 109.47216 * 54.89094 * 1 2 3 27 27 H 1.08996 * 109.46733 * 174.89071 * 1 2 3 28 28 H 1.08997 * 109.47148 * 240.00599 * 2 1 3 29 29 H 1.08996 * 109.47370 * 119.99723 * 2 1 3 30 30 H 0.97000 * 119.99910 * 179.97438 * 8 7 5 31 31 H 1.00900 * 110.99766 * 82.90567 * 13 3 2 32 32 H 1.08996 * 110.99147 * 36.11649 * 16 14 13 33 33 H 1.08994 * 111.02232 * 272.31368 * 16 14 13 34 34 H 1.08998 * 109.47100 * 175.37215 * 19 17 16 35 35 H 1.08995 * 109.47116 * 295.38184 * 19 17 16 36 36 H 1.09002 * 109.46392 * 55.37572 * 19 17 16 37 37 H 1.09003 * 115.55177 * 325.58017 * 21 20 17 38 38 H 1.08997 * 117.50140 * 214.96783 * 22 21 20 39 39 H 1.09003 * 117.49494 * 359.97438 * 22 21 20 40 40 H 1.08998 * 117.49689 * 359.97124 * 23 21 20 41 41 H 1.09001 * 117.50070 * 144.96953 * 23 21 20 42 42 H 1.09003 * 109.88710 * 118.41725 * 24 20 17 43 43 H 1.09001 * 109.88752 * 239.60407 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6179 1.9772 -0.8509 5 6 3.5435 1.4439 -0.1015 6 1 4.1373 1.8925 0.6811 7 6 4.1612 0.8723 -1.1937 8 7 3.4382 0.3255 -2.1465 9 14 6.0249 0.8745 -1.3200 10 1 6.5656 -0.3537 -0.6839 11 1 6.4241 0.9082 -2.7499 12 1 6.5666 2.0707 -0.6265 13 7 1.6328 2.1058 1.2460 14 6 1.5137 3.5575 1.0550 15 1 1.2211 3.7873 0.0305 16 6 0.5016 4.1622 2.0633 17 6 1.0050 5.6230 2.1738 18 1 0.6316 6.2189 1.3409 19 6 0.5680 6.2377 3.5051 20 7 2.4786 5.5202 2.1133 21 6 3.0600 6.6847 1.4321 22 6 3.8784 7.6625 2.2776 23 6 4.5825 6.7316 1.2884 24 6 2.8338 4.2695 1.4181 25 1 -0.3633 0.4325 0.9322 26 1 -0.3633 0.5910 -0.8406 27 1 -0.3633 -1.0236 -0.0915 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8726 -0.0763 -2.9151 31 1 2.2729 1.8910 1.9958 32 1 0.5598 3.6553 3.0265 33 1 -0.5131 4.1278 1.6670 34 1 0.9980 7.2345 3.6035 35 1 -0.5194 6.3065 3.5340 36 1 0.9143 5.6099 4.3261 37 1 2.4647 7.0990 0.6184 38 1 3.8215 8.7202 2.0202 39 1 3.9852 7.4422 3.3398 40 1 5.1527 5.8987 1.6997 41 1 4.9888 7.1764 0.3800 42 1 3.3948 4.4957 0.5113 43 1 3.4283 3.6355 2.0760 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228588711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:33 Heat of formation + Delta-G solvation = 20.575690 kcal Electronic energy + Delta-G solvation = -19662.893756 eV Core-core repulsion = 16936.171681 eV Total energy + Delta-G solvation = -2726.722075 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.28799 -36.53851 -35.16670 -32.38037 -31.25155 -30.31922 -28.23050 -25.81907 -25.04627 -22.70938 -22.17942 -21.32884 -20.23455 -19.50911 -19.42206 -16.64774 -16.30056 -15.30477 -14.82240 -14.54028 -14.10327 -13.76615 -13.30764 -12.99675 -12.73389 -12.51934 -12.16319 -12.09873 -11.77104 -11.49147 -11.39434 -11.24629 -11.15559 -11.05006 -10.87530 -10.69225 -10.64299 -10.27851 -10.20709 -10.13982 -9.85004 -9.58232 -9.40553 -9.02115 -8.38535 -8.06929 -7.23910 -6.00367 -4.12980 3.25792 3.33255 3.35689 3.89554 4.08207 4.38521 4.90772 5.03738 5.06826 5.16081 5.25469 5.33236 5.52834 5.53352 5.63290 5.72474 5.74965 5.85773 5.86591 6.02621 6.08367 6.18337 6.26434 6.29035 6.34048 6.40468 6.47565 6.51026 6.61779 6.69859 6.75852 7.13160 7.17463 7.29030 7.44037 7.45795 7.59552 7.77652 8.09236 8.14354 8.33489 8.65438 8.99922 9.54742 10.99833 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018005 B = 0.007386 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.782796 B = 3789.982630 C = 5127.329555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C 0.215 3.785 4 H 0.030 0.970 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.677 5.677 14 C 0.083 3.917 15 H 0.072 0.928 16 C -0.115 4.115 17 C 0.069 3.931 18 H 0.049 0.951 19 C -0.130 4.130 20 N -0.500 5.500 21 C 0.006 3.994 22 C -0.167 4.167 23 C -0.174 4.174 24 C 0.029 3.971 25 H 0.046 0.954 26 H 0.035 0.965 27 H 0.024 0.976 28 H 0.090 0.910 29 H 0.030 0.970 30 H 0.261 0.739 31 H 0.331 0.669 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.059 0.941 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.242 10.617 7.040 13.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.048 0.952 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.305 5.305 14 C -0.030 4.030 15 H 0.090 0.910 16 C -0.153 4.153 17 C -0.040 4.040 18 H 0.067 0.933 19 C -0.187 4.187 20 N -0.225 5.225 21 C -0.103 4.103 22 C -0.205 4.205 23 C -0.212 4.212 24 C -0.099 4.099 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.108 0.892 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.149 0.851 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.701 10.365 7.244 13.176 hybrid contribution 1.845 0.266 -1.159 2.195 sum -1.856 10.631 6.085 12.389 Atomic orbital electron populations 1.21683 0.99042 0.98234 1.00334 1.21505 0.92045 0.99297 1.01678 1.19227 0.92794 0.91165 0.86101 0.95236 1.21884 0.92579 1.37799 1.05836 0.92679 1.24927 0.97816 0.95043 0.95714 1.69877 1.34842 1.38069 1.09605 0.86696 0.86295 0.78440 0.77173 1.20653 1.21288 1.20035 1.60891 1.54505 1.05175 1.09956 1.22618 0.92697 0.89818 0.97836 0.90993 1.22797 0.98768 0.93196 1.00583 1.22558 0.87244 0.96916 0.97237 0.93270 1.21653 0.99675 1.00463 0.96948 1.63297 1.08921 1.00891 1.49364 1.22589 0.93267 0.95769 0.98698 1.23013 1.04091 0.95410 0.97981 1.23007 0.94332 1.02668 1.01179 1.23561 0.98871 0.90074 0.97436 0.93458 0.94562 0.95716 0.89225 0.95073 0.92928 0.85132 0.90615 0.91410 0.93089 0.92853 0.92224 0.89808 0.89361 0.88479 0.88330 0.89018 0.92219 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.73 37.16 0.36 -2.42 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.67 16 3 C 0.21 5.17 1.99 -68.86 -0.14 5.04 16 4 H 0.03 0.80 7.38 -51.93 -0.38 0.42 16 5 C -0.54 -14.14 8.10 -34.44 -0.28 -14.42 16 6 H 0.06 1.43 7.20 -52.49 -0.38 1.05 16 7 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 8 N -0.89 -24.76 11.29 55.43 0.63 -24.14 16 9 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.68 -13.77 5.66 -99.04 -0.56 -14.33 16 14 C 0.08 1.52 3.25 -65.89 -0.21 1.30 16 15 H 0.07 1.44 7.39 -51.93 -0.38 1.06 16 16 C -0.11 -1.74 6.18 -24.59 -0.15 -1.90 16 17 C 0.07 0.96 3.05 -66.19 -0.20 0.76 16 18 H 0.05 0.68 7.56 -51.92 -0.39 0.29 16 19 C -0.13 -1.54 9.59 37.16 0.36 -1.18 16 20 N -0.50 -7.66 4.98 -215.47 -1.07 -8.73 16 21 C 0.01 0.09 5.02 -67.71 -0.34 -0.25 16 22 C -0.17 -2.00 10.46 -26.73 -0.28 -2.28 16 23 C -0.17 -2.34 9.61 -26.73 -0.26 -2.59 16 24 C 0.03 0.52 5.50 -2.83 -0.02 0.50 16 25 H 0.05 0.93 7.87 -51.93 -0.41 0.52 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.09 2.38 5.97 -51.93 -0.31 2.07 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.33 6.77 7.67 -39.29 -0.30 6.47 16 32 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 37 H 0.08 1.16 7.74 -51.93 -0.40 0.75 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.10 1.44 8.10 -51.93 -0.42 1.02 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 1.17 7.21 -51.93 -0.37 0.79 16 43 H 0.07 1.43 7.30 -51.93 -0.38 1.05 16 LS Contribution 335.18 15.07 5.05 5.05 Total: -1.00 -26.33 335.18 -10.29 -36.62 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -7.91 Total: 7.98 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -1.40 Total: -18.40 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -1.01 Total: -47.20 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -26.33 -10.29 -36.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228588711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.200 kcal (2) G-P(sol) polarization free energy of solvation -26.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds