Wall clock time and date at job start Mon Mar 30 2020 04:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46975 * 2 1 4 4 H 1.08996 * 109.47375 * 304.10407 * 3 2 1 5 5 C 1.50693 * 109.47294 * 184.09857 * 3 2 1 6 6 H 1.08002 * 120.00695 * 240.00235 * 5 3 2 7 7 C 1.37885 * 119.99870 * 60.00221 * 5 3 2 8 8 N 1.31510 * 119.99681 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00061 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47378 * 89.99882 * 9 7 5 11 11 H 1.48498 * 109.47125 * 210.00292 * 9 7 5 12 12 H 1.48504 * 109.47106 * 330.00170 * 9 7 5 13 13 N 1.46907 * 109.46840 * 64.10287 * 3 2 1 14 14 C 1.46898 * 110.99757 * 206.86248 * 13 3 2 15 15 H 1.09000 * 110.63119 * 30.36740 * 14 13 3 16 16 C 1.55143 * 110.70579 * 153.47372 * 14 13 3 17 17 C 1.54905 * 101.65093 * 154.20850 * 16 14 13 18 18 H 1.09009 * 110.46763 * 81.81047 * 17 16 14 19 19 C 1.53006 * 110.37276 * 204.09697 * 17 16 14 20 20 N 1.47843 * 104.79866 * 322.92948 * 17 16 14 21 21 C 1.46901 * 110.99811 * 146.36587 * 20 17 16 22 22 C 1.52999 * 117.52032 * 111.28478 * 21 20 17 23 23 C 1.53001 * 117.49790 * 179.91519 * 21 20 17 24 24 C 1.47445 * 108.56641 * 24.09680 * 20 17 16 25 25 H 1.08997 * 109.47161 * 294.88748 * 1 2 3 26 26 H 1.08991 * 109.47216 * 54.89094 * 1 2 3 27 27 H 1.08996 * 109.46733 * 174.89071 * 1 2 3 28 28 H 1.08997 * 109.47148 * 240.00599 * 2 1 3 29 29 H 1.08996 * 109.47370 * 119.99723 * 2 1 3 30 30 H 0.97000 * 119.99910 * 179.97438 * 8 7 5 31 31 H 1.00900 * 110.99766 * 82.90567 * 13 3 2 32 32 H 1.08996 * 110.99147 * 36.11649 * 16 14 13 33 33 H 1.08994 * 111.02232 * 272.31368 * 16 14 13 34 34 H 1.08998 * 109.47100 * 175.37215 * 19 17 16 35 35 H 1.08995 * 109.47116 * 295.38184 * 19 17 16 36 36 H 1.09002 * 109.46392 * 55.37572 * 19 17 16 37 37 H 1.09003 * 115.55177 * 325.58017 * 21 20 17 38 38 H 1.08997 * 117.50140 * 214.96783 * 22 21 20 39 39 H 1.09003 * 117.49494 * 359.97438 * 22 21 20 40 40 H 1.08998 * 117.49689 * 359.97124 * 23 21 20 41 41 H 1.09001 * 117.50070 * 144.96953 * 23 21 20 42 42 H 1.09003 * 109.88710 * 118.41725 * 24 20 17 43 43 H 1.09001 * 109.88752 * 239.60407 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6179 1.9772 -0.8509 5 6 3.5435 1.4439 -0.1015 6 1 4.1373 1.8925 0.6811 7 6 4.1612 0.8723 -1.1937 8 7 3.4382 0.3255 -2.1465 9 14 6.0249 0.8745 -1.3200 10 1 6.5656 -0.3537 -0.6839 11 1 6.4241 0.9082 -2.7499 12 1 6.5666 2.0707 -0.6265 13 7 1.6328 2.1058 1.2460 14 6 1.5137 3.5575 1.0550 15 1 1.2211 3.7873 0.0305 16 6 0.5016 4.1622 2.0633 17 6 1.0050 5.6230 2.1738 18 1 0.6316 6.2189 1.3409 19 6 0.5680 6.2377 3.5051 20 7 2.4786 5.5202 2.1133 21 6 3.0600 6.6847 1.4321 22 6 3.8784 7.6625 2.2776 23 6 4.5825 6.7316 1.2884 24 6 2.8338 4.2695 1.4181 25 1 -0.3633 0.4325 0.9322 26 1 -0.3633 0.5910 -0.8406 27 1 -0.3633 -1.0236 -0.0915 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8726 -0.0763 -2.9151 31 1 2.2729 1.8910 1.9958 32 1 0.5598 3.6553 3.0265 33 1 -0.5131 4.1278 1.6670 34 1 0.9980 7.2345 3.6035 35 1 -0.5194 6.3065 3.5340 36 1 0.9143 5.6099 4.3261 37 1 2.4647 7.0990 0.6184 38 1 3.8215 8.7202 2.0202 39 1 3.9852 7.4422 3.3398 40 1 5.1527 5.8987 1.6997 41 1 4.9888 7.1764 0.3800 42 1 3.3948 4.4957 0.5113 43 1 3.4283 3.6355 2.0760 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228588711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:32 Heat of formation + Delta-G solvation = 5.147352 kcal Electronic energy + Delta-G solvation = -19663.562779 eV Core-core repulsion = 16936.171681 eV Total energy + Delta-G solvation = -2727.391098 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.57633 -38.02986 -36.61841 -34.20149 -32.96195 -31.56479 -29.78461 -27.64607 -26.33334 -24.54825 -23.23338 -22.55884 -21.68037 -21.23259 -20.74846 -18.59379 -17.57258 -16.87014 -16.39884 -15.93214 -15.55459 -15.32978 -14.81666 -14.59883 -14.20952 -13.85314 -13.62421 -13.48352 -13.17062 -13.10378 -12.89696 -12.78050 -12.58427 -12.55611 -12.41011 -12.25751 -12.10924 -11.91539 -11.69924 -11.49249 -11.26777 -11.18295 -10.96796 -10.91081 -10.45692 -9.38157 -8.95322 -8.05171 -6.26193 1.35709 1.38003 1.45958 2.38950 2.76464 2.97401 3.14711 3.53455 3.86167 3.93990 3.99392 4.14170 4.19041 4.28781 4.37969 4.51537 4.58548 4.62853 4.72773 4.76635 4.77498 4.89925 4.92551 4.95572 5.01421 5.07788 5.14245 5.19803 5.25296 5.28390 5.30454 5.42700 5.48675 5.53700 5.64873 5.77958 5.99595 6.11848 6.20897 6.26889 6.40822 6.81657 7.02163 7.44941 8.91402 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018005 B = 0.007386 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.782796 B = 3789.982630 C = 5127.329555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.103 4.103 3 C 0.224 3.776 4 H -0.005 1.005 5 C -0.549 4.549 6 H 0.052 0.948 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.944 3.056 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.666 5.666 14 C 0.079 3.921 15 H 0.049 0.951 16 C -0.103 4.103 17 C 0.069 3.931 18 H 0.053 0.947 19 C -0.121 4.121 20 N -0.500 5.500 21 C -0.015 4.015 22 C -0.139 4.139 23 C -0.185 4.185 24 C 0.043 3.957 25 H 0.058 0.942 26 H 0.028 0.972 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.029 0.971 30 H 0.261 0.739 31 H 0.332 0.668 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.034 0.966 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 12.019 8.437 15.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 C 0.115 3.885 4 H 0.013 0.987 5 C -0.588 4.588 6 H 0.070 0.930 7 C -0.179 4.179 8 N -0.552 5.552 9 Si 0.771 3.229 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.295 5.295 14 C -0.033 4.033 15 H 0.067 0.933 16 C -0.141 4.141 17 C -0.039 4.039 18 H 0.071 0.929 19 C -0.179 4.179 20 N -0.224 5.224 21 C -0.124 4.124 22 C -0.177 4.177 23 C -0.222 4.222 24 C -0.086 4.086 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.132 0.868 39 H 0.116 0.884 40 H 0.099 0.901 41 H 0.120 0.880 42 H 0.052 0.948 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.043 11.785 8.659 15.173 hybrid contribution 1.943 -0.135 -1.601 2.521 sum -2.100 11.650 7.059 13.782 Atomic orbital electron populations 1.21538 0.96417 0.99480 1.00603 1.21371 0.94388 0.98432 1.00029 1.18977 0.91629 0.91421 0.86450 0.98696 1.22159 0.93810 1.37219 1.05654 0.92958 1.25618 1.01705 0.94992 0.95612 1.70004 1.36281 1.38838 1.10029 0.85775 0.81668 0.78453 0.77050 1.20162 1.21129 1.19759 1.60860 1.53919 1.06459 1.08231 1.22649 0.94255 0.88704 0.97714 0.93291 1.22720 0.98243 0.93748 0.99419 1.22657 0.86193 0.96131 0.98891 0.92938 1.21594 1.00916 1.00402 0.95004 1.63358 1.10011 1.00253 1.48807 1.22727 0.93571 0.96128 0.99950 1.23062 1.01006 0.96137 0.97455 1.23021 0.93803 1.03017 1.02393 1.23260 0.97944 0.91383 0.96062 0.92287 0.95260 0.93788 0.92187 0.95264 0.93016 0.85052 0.90336 0.90364 0.92356 0.90947 0.92649 0.89530 0.86795 0.88443 0.90131 0.88002 0.94784 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 9.73 71.98 0.70 -4.27 16 2 C -0.10 -4.97 5.45 30.60 0.17 -4.81 16 3 C 0.22 11.07 1.99 44.17 0.09 11.16 16 4 H 0.00 -0.28 7.38 -2.39 -0.02 -0.29 16 5 C -0.55 -29.34 8.10 25.60 0.21 -29.13 16 6 H 0.05 2.77 7.20 -2.91 -0.02 2.75 16 7 C 0.02 1.12 5.30 84.66 0.45 1.57 16 8 N -0.91 -52.24 11.29 21.45 0.24 -52.00 16 9 Si 0.94 43.61 29.54 68.60 2.03 45.63 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 N -0.67 -27.40 5.66 -467.27 -2.65 -30.04 16 14 C 0.08 2.92 3.25 46.10 0.15 3.07 16 15 H 0.05 2.04 7.39 -2.39 -0.02 2.02 16 16 C -0.10 -2.98 6.18 31.98 0.20 -2.78 16 17 C 0.07 1.81 3.05 45.39 0.14 1.95 16 18 H 0.05 1.35 7.56 -2.38 -0.02 1.34 16 19 C -0.12 -2.52 9.59 71.98 0.69 -1.83 16 20 N -0.50 -14.86 4.98 -835.60 -4.16 -19.03 16 21 C -0.01 -0.39 5.02 44.92 0.23 -0.17 16 22 C -0.14 -2.98 10.46 30.59 0.32 -2.66 16 23 C -0.18 -4.80 9.61 30.60 0.29 -4.50 16 24 C 0.04 1.55 5.50 86.65 0.48 2.03 16 25 H 0.06 2.23 7.87 -2.39 -0.02 2.21 16 26 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 3.26 5.97 -2.39 -0.01 3.25 16 29 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 31 H 0.33 13.66 7.67 -89.69 -0.69 12.97 16 32 H 0.08 2.27 8.04 -2.39 -0.02 2.25 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.05 1.21 8.13 -2.39 -0.02 1.19 16 37 H 0.09 2.28 7.74 -2.39 -0.02 2.26 16 38 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.08 2.38 8.10 -2.39 -0.02 2.36 16 41 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.03 1.38 7.21 -2.39 -0.02 1.36 16 43 H 0.06 2.33 7.30 -2.39 -0.02 2.31 16 Total: -1.00 -57.07 335.18 -0.17 -57.24 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.27 Total: 28.57 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 4.10 Total: -30.37 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -6.57 Total: -101.07 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -57.07 -0.17 -57.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228588711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.384 kcal (2) G-P(sol) polarization free energy of solvation -57.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds