Wall clock time and date at job start Mon Mar 30 2020 04:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47081 * 2 1 4 4 H 1.08997 * 109.47153 * 59.96405 * 3 2 1 5 5 C 1.50702 * 109.47253 * 179.97438 * 3 2 1 6 6 H 1.07995 * 120.00413 * 119.99649 * 5 3 2 7 7 C 1.37877 * 119.99640 * 300.00177 * 5 3 2 8 8 N 1.31507 * 120.00442 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99964 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46910 * 89.99530 * 9 7 5 11 11 H 1.48499 * 109.47499 * 209.99884 * 9 7 5 12 12 H 1.48503 * 109.46814 * 330.00080 * 9 7 5 13 13 N 1.46900 * 109.47084 * 299.96273 * 3 2 1 14 14 C 1.46899 * 110.99930 * 293.59284 * 13 3 2 15 15 C 1.53007 * 109.46837 * 160.25440 * 14 13 3 16 16 H 1.09000 * 110.36271 * 300.02185 * 15 14 13 17 17 C 1.54379 * 110.41089 * 177.67673 * 15 14 13 18 18 C 1.54259 * 105.06061 * 217.36509 * 17 15 14 19 19 C 1.54387 * 105.05993 * 359.97438 * 18 17 15 20 20 N 1.48557 * 110.41557 * 62.49770 * 15 14 13 21 21 C 1.46904 * 110.99845 * 169.63864 * 13 3 2 22 22 C 1.52997 * 117.50157 * 355.75142 * 21 13 3 23 23 C 1.52998 * 117.49804 * 287.08821 * 21 13 3 24 24 H 1.08992 * 109.46844 * 185.05923 * 1 2 3 25 25 H 1.09000 * 109.46804 * 305.05760 * 1 2 3 26 26 H 1.08999 * 109.46972 * 65.06046 * 1 2 3 27 27 H 1.09001 * 109.47315 * 240.00233 * 2 1 3 28 28 H 1.09000 * 109.47249 * 119.99795 * 2 1 3 29 29 H 0.97006 * 120.00660 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.47374 * 280.24917 * 14 13 3 31 31 H 1.09002 * 109.47195 * 40.25206 * 14 13 3 32 32 H 1.09007 * 110.32046 * 336.25871 * 17 15 14 33 33 H 1.08998 * 110.32861 * 98.46759 * 17 15 14 34 34 H 1.08998 * 110.32428 * 118.88909 * 18 17 15 35 35 H 1.08999 * 110.32304 * 241.00448 * 18 17 15 36 36 H 1.09001 * 110.41119 * 142.62813 * 19 18 17 37 37 H 1.08994 * 110.40824 * 265.07768 * 19 18 17 38 38 H 1.00896 * 111.00091 * 277.82240 * 20 15 14 39 39 H 1.08994 * 115.54708 * 141.41997 * 21 13 3 40 40 H 1.09009 * 117.49780 * 359.97438 * 22 21 13 41 41 H 1.08994 * 117.50374 * 145.01600 * 22 21 13 42 42 H 1.08995 * 117.49830 * 214.97643 * 23 21 13 43 43 H 1.08994 * 117.49820 * 0.02562 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6762 1.9565 0.8896 5 6 3.5470 1.4426 0.0006 6 1 4.0874 1.9100 -0.8092 7 6 4.2359 0.8457 1.0351 8 7 3.5780 0.2768 2.0215 9 14 6.1040 0.8451 1.0356 10 1 6.5992 2.0577 1.7353 11 1 6.5985 -0.3673 1.7362 12 1 6.5993 0.8444 -0.3644 13 7 1.5511 2.1348 -1.1999 14 6 2.1438 1.5624 -2.4161 15 6 1.2854 1.9362 -3.6263 16 1 0.2734 1.5490 -3.5076 17 6 1.9204 1.3943 -4.9248 18 6 1.6615 2.4859 -5.9836 19 6 0.8911 3.5953 -5.2358 20 7 1.2606 3.4104 -3.8085 21 6 1.8101 3.5784 -1.1171 22 6 2.4195 4.1136 0.1803 23 6 0.9516 4.3958 -0.1498 24 1 -0.3633 -1.0236 0.0906 25 1 -0.3633 0.5903 0.8412 26 1 -0.3633 0.4333 -0.9318 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.0626 -0.1429 2.7495 30 1 3.1511 1.9567 -2.5496 31 1 2.1876 0.4773 -2.3229 32 1 2.9917 1.2453 -4.7888 33 1 1.4419 0.4602 -5.2192 34 1 2.6055 2.8727 -6.3672 35 1 1.0572 2.0871 -6.7984 36 1 1.2061 4.5785 -5.5852 37 1 -0.1831 3.4690 -5.3704 38 1 0.5788 3.8385 -3.2003 39 1 2.1116 4.0561 -2.0492 40 1 2.6278 3.3945 0.9726 41 1 3.1216 4.9435 0.1017 42 1 0.6887 5.4114 -0.4454 43 1 0.1949 3.8624 0.4254 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233866129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:28 Heat of formation + Delta-G solvation = 22.121682 kcal Electronic energy + Delta-G solvation = -20294.832718 eV Core-core repulsion = 17568.177682 eV Total energy + Delta-G solvation = -2726.655036 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38260 -38.68830 -36.01614 -34.14809 -32.76017 -31.08064 -30.26307 -28.17566 -25.44598 -24.72625 -23.03808 -22.33631 -21.58159 -21.05528 -20.06023 -18.17200 -17.71153 -17.13361 -16.66529 -16.11334 -15.80300 -14.91944 -14.82916 -14.44930 -14.23956 -13.66322 -13.62328 -13.44137 -13.13480 -13.06453 -12.73625 -12.64559 -12.54391 -12.33468 -12.15147 -12.09566 -11.99731 -11.62581 -11.52036 -11.32440 -11.27705 -11.08888 -10.88354 -10.61212 -10.35239 -9.33187 -8.69774 -7.95913 -6.15941 1.36090 1.39146 1.46742 2.42861 3.12601 3.20986 3.44691 3.59864 3.96926 3.98496 4.20763 4.31400 4.43046 4.47516 4.51133 4.60015 4.71407 4.75691 4.77071 4.88264 4.92491 4.95828 4.98683 5.02825 5.08128 5.13770 5.25628 5.27261 5.34214 5.35351 5.43901 5.47344 5.58225 5.66671 5.69435 5.85987 6.00503 6.14033 6.29280 6.49004 6.53241 6.83770 7.04230 7.52412 8.97357 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019950 B = 0.007464 C = 0.007161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.144540 B = 3750.538704 C = 3909.211913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.108 4.108 3 C 0.222 3.778 4 H 0.011 0.989 5 C -0.524 4.524 6 H 0.045 0.955 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 0.936 3.064 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.501 5.501 14 C 0.089 3.911 15 C 0.080 3.920 16 H 0.049 0.951 17 C -0.122 4.122 18 C -0.118 4.118 19 C 0.033 3.967 20 N -0.670 5.670 21 C 0.028 3.972 22 C -0.218 4.218 23 C -0.168 4.168 24 H 0.042 0.958 25 H 0.031 0.969 26 H 0.056 0.944 27 H 0.030 0.970 28 H 0.059 0.941 29 H 0.258 0.742 30 H 0.016 0.984 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.342 0.658 39 H 0.137 0.863 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.111 0.889 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.169 4.688 -12.635 14.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.147 4.147 3 C 0.115 3.885 4 H 0.028 0.972 5 C -0.564 4.564 6 H 0.063 0.937 7 C -0.178 4.178 8 N -0.554 5.554 9 Si 0.764 3.236 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.222 5.222 14 C -0.040 4.040 15 C -0.030 4.030 16 H 0.067 0.933 17 C -0.161 4.161 18 C -0.156 4.156 19 C -0.096 4.096 20 N -0.300 5.300 21 C -0.081 4.081 22 C -0.256 4.256 23 C -0.206 4.206 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.159 0.841 39 H 0.154 0.846 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.129 0.871 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.925 4.620 -12.558 14.634 hybrid contribution 1.264 -0.365 0.826 1.554 sum -4.661 4.255 -11.732 13.321 Atomic orbital electron populations 1.21531 0.96322 0.99396 1.00709 1.21492 0.94362 0.98636 1.00185 1.19115 0.91054 0.90621 0.87744 0.97167 1.21876 0.93631 1.34579 1.06299 0.93703 1.25497 1.01199 0.95478 0.95592 1.69991 1.36030 1.38361 1.10984 0.85893 0.82662 0.77219 0.77859 1.20789 1.21138 1.19929 1.62176 1.56121 1.01065 1.02824 1.21807 0.94829 0.98215 0.89114 1.22408 0.97629 0.88830 0.94123 0.93340 1.22331 1.00839 0.98952 0.93969 1.22264 1.00794 0.95060 0.97438 1.22973 0.97934 0.99815 0.88862 1.63806 1.51711 1.09714 1.04802 1.22927 1.01751 0.89126 0.94317 1.23358 0.96135 1.03284 1.02840 1.23031 0.93008 1.00701 1.03899 0.93879 0.94980 0.92495 0.95158 0.92202 0.93233 0.96551 0.92352 0.92382 0.90479 0.91342 0.89880 0.89756 0.93570 0.84069 0.84610 0.90011 0.90021 0.87067 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.84 9.68 71.98 0.70 -4.14 16 2 C -0.11 -5.12 5.08 30.60 0.16 -4.97 16 3 C 0.22 10.76 1.30 44.17 0.06 10.82 16 4 H 0.01 0.58 6.22 -2.39 -0.01 0.56 16 5 C -0.52 -27.89 5.74 25.60 0.15 -27.75 16 6 H 0.04 2.46 6.46 -2.91 -0.02 2.44 16 7 C 0.02 1.17 5.30 84.66 0.45 1.62 16 8 N -0.91 -52.16 11.32 21.45 0.24 -51.91 16 9 Si 0.94 44.22 29.54 68.60 2.03 46.25 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 13 N -0.50 -20.27 3.90 -850.26 -3.32 -23.59 16 14 C 0.09 3.39 3.69 86.31 0.32 3.71 16 15 C 0.08 2.37 3.42 45.07 0.15 2.53 16 16 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 17 C -0.12 -3.04 6.55 31.49 0.21 -2.83 16 18 C -0.12 -2.35 7.00 31.49 0.22 -2.13 16 19 C 0.03 0.68 7.47 86.45 0.65 1.33 16 20 N -0.67 -17.94 5.11 -478.92 -2.45 -20.39 16 21 C 0.03 1.07 4.30 44.91 0.19 1.26 16 22 C -0.22 -8.91 8.77 30.62 0.27 -8.64 16 23 C -0.17 -5.77 10.23 30.62 0.31 -5.45 16 24 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.06 2.11 7.77 -2.39 -0.02 2.09 16 27 H 0.03 1.41 6.26 -2.39 -0.01 1.40 16 28 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 29 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 30 H 0.02 0.70 6.84 -2.39 -0.02 0.68 16 31 H 0.06 2.39 5.90 -2.39 -0.01 2.38 16 32 H 0.06 1.60 7.85 -2.38 -0.02 1.58 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.34 9.12 7.45 -89.70 -0.67 8.45 16 39 H 0.14 4.82 5.57 -2.39 -0.01 4.81 16 40 H 0.08 4.08 5.08 -2.38 -0.01 4.07 16 41 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 42 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 43 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -57.26 319.05 0.64 -56.62 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.31 Total: 27.66 kcal Atomic # 6 Polarization: -38.47 SS G_CDS: 3.83 Total: -34.64 kcal Atomic # 7 Polarization: -90.37 SS G_CDS: -5.52 Total: -95.89 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -57.26 0.64 -56.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233866129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.742 kcal (2) G-P(sol) polarization free energy of solvation -57.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds